Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0309651 Rosa chinensis HOM05D006958 ORTHO05D008814 2.8e-191 671.8 338 100.0
FAN27G0228 Fragaria x ananassa HOM05D006958 ORTHO05D008814 1.5e-173 612.8 342 90.1
FvH4_2g33060 Fragaria vesca HOM05D006958 ORTHO05D008814 5.9e-173 610.9 338 90.8
FAN15G0662 Fragaria x ananassa HOM05D006958 ORTHO05D008814 7.6e-173 610.5 338 90.5
FAN24G2490 Fragaria x ananassa HOM05D006958 ORTHO05D008814 8.4e-172 607.1 342 90.1
FAN20G1263 Fragaria x ananassa HOM05D006958 ORTHO05D008814 6.7e-169 597.4 354 86.4
Prupe.1G422600 Prunus persica HOM05D006958 ORTHO05D008814 1.6e-146 523.1 345 75.7
MD15G1069100 Malus domestica HOM05D006958 ORTHO05D008814 8.2e-143 510.8 345 74.5
Thecc.08G088500 Theobroma cacao HOM05D006958 ORTHO05D008814 7.2e-131 471.1 341 68.3
Atru.chr13.835 Acer truncatum HOM05D006958 ORTHO05D008814 1.2e-128 463.8 342 67.3
Ciclev10001733m.g Citrus clementina HOM05D006958 ORTHO05D008814 1.5e-128 463.4 337 68.0
CANSAT25G3409 Cannabis sativa HOM05D006958 ORTHO05D008814 2.2e-127 459.5 344 66.9
Manes.18G046700 Manihot esculenta HOM05D006958 ORTHO05D008814 1.1e-126 457.2 345 66.7
Duzib093G1923 Durio zibethinus HOM05D006958 ORTHO05D008814 3.1e-126 455.7 341 67.2
COL.COLO4_28503 Corchorus olitorius HOM05D006958 ORTHO05D008814 5.4e-126 454.9 340 65.6
ClCG08G016520 Citrullus lanatus HOM05D006958 ORTHO05D008814 7.7e-125 451.1 341 64.8
TAR376G0445 Trochodendron aralioides HOM05D006958 ORTHO05D008814 1.7e-124 449.9 354 65.5
Haze_22433 Corylus avellana HOM05D006958 ORTHO05D008814 8.6e-124 447.6 344 65.4
Cfa013775 Carpinus fangiana HOM05D006958 ORTHO05D008814 1.5e-123 446.8 345 64.9
Gorai.009G220300 Gossypium raimondii HOM05D006958 ORTHO05D008814 4.3e-123 445.3 340 65.0
CiPaw.07G174600 Carya illinoinensis HOM05D006958 ORTHO05D008814 1.2e-122 443.7 347 65.4
Dinv39219 Davidia involucrata HOM05D006958 ORTHO05D008814 2.1e-122 443.0 347 66.0
TWI12G1073 Tripterygium wilfordii HOM05D006958 ORTHO05D008814 2.8e-122 442.6 347 63.7
Gohir.D05G213600 Gossypium hirsutum HOM05D006958 ORTHO05D008814 6.1e-122 441.4 342 64.6
Sed0002112 Sechium edule HOM05D006958 ORTHO05D008814 3.0e-121 439.1 341 64.5
Potri.002G118300 Populus trichocarpa HOM05D006958 ORTHO05D008814 4.0e-121 438.7 342 64.3
Actinidia10201 Actinidia chinensis HOM05D006958 ORTHO05D008814 5.2e-121 438.3 345 64.6
QL12p038133 Quercus lobata HOM05D006958 ORTHO05D008814 6.8e-121 438.0 345 63.2
THA.LOC104816754 Tarenaya hassleriana HOM05D006958 ORTHO05D008814 1.2e-120 437.2 335 63.9
CsaV3_2G026090 Cucumis sativus L. HOM05D006958 ORTHO05D008814 1.4e-118 430.3 343 63.6
CSS0020437 Camellia sinensis var. sinensis HOM05D006958 ORTHO05D008814 1.6e-117 426.8 346 64.2
Rhsim06G0062400 Rhododendron simsii HOM05D006958 ORTHO05D008814 7.8e-117 424.5 346 63.6
Actinidia22696 Actinidia chinensis HOM05D006958 ORTHO05D008814 2.3e-116 422.9 345 63.2
AT1G59600 Arabidopsis thaliana HOM05D006958 ORTHO05D008814 8.6e-116 421.0 334 64.1
MELO3C010802.2 Cucumis melo HOM05D006958 ORTHO05D008814 1.5e-115 420.2 343 62.4
Thhalv10023590m.g Eutrema salsugineum HOM05D006958 ORTHO05D008814 7.3e-115 417.9 337 62.6
CARHR283790 Cardamine hirsuta HOM05D006958 ORTHO05D008814 2.1e-114 416.4 339 63.7
PGR031G1511 Punica granatum HOM05D006958 ORTHO05D008814 3.6e-114 415.6 339 60.5
AL2G17470 Arabidopsis lyrata HOM05D006958 ORTHO05D008814 4.7e-114 415.2 335 63.9
Lalb_Chr14g0368181 Lupinus albus HOM05D006958 ORTHO05D008814 1.8e-113 413.3 339 61.4
CSS0026693 Camellia sinensis var. sinensis HOM05D006958 ORTHO05D008814 2.3e-113 412.9 346 63.6
Carub.0002s0585 Capsella rubella HOM05D006958 ORTHO05D008814 6.8e-113 411.4 335 63.0
Eucgr.F02250 Eucalyptus grandis HOM05D006958 ORTHO05D008814 1.3e-111 407.1 346 56.9
Cpa.g.sc142.28 Carica papaya HOM05D006958 ORTHO05D008814 3.2e-110 402.5 274 70.8
Sp2g04980 Schrenkiella parvula HOM05D006958 ORTHO05D008814 3.2e-110 402.5 338 61.2
arahy.Tifrunner.gnm1.ann1.JFD9T8 Arachis hypogaea HOM05D006958 ORTHO05D008814 7.0e-110 401.4 334 61.4
C01p36350 Brassica napus HOM05D006958 ORTHO05D008814 9.2e-110 401.0 331 61.6
BolC1t03593H Brassica oleracea HOM05D006958 ORTHO05D008814 8.6e-108 394.4 332 61.4
Sopen04g031420 Solanum pennellii HOM05D006958 ORTHO05D008814 2.1e-106 389.8 342 60.2
A01p28700 Brassica napus HOM05D006958 ORTHO05D008814 4.7e-106 388.7 331 59.5
Sc02g0007890 Simmondsia chinensis HOM05D006958 ORTHO05D008814 8.1e-106 387.9 338 59.5
BraA01t03033Z Brassica rapa HOM05D006958 ORTHO05D008814 1.8e-105 386.7 331 59.2
Nitab4.5_0002484g0050 Nicotiana tabacum HOM05D006958 ORTHO05D008814 3.1e-105 386.0 340 58.5
MBI16_g23890_MAGBIO Magnolia biondii HOM05D006958 ORTHO05D008814 4.0e-105 385.6 350 58.6
Gohir.A05G210300 Gossypium hirsutum HOM05D006958 ORTHO05D008814 5.2e-105 385.2 275 68.0
Solyc04g077820.4 Solanum lycopersicum HOM05D006958 ORTHO05D008814 5.2e-105 385.2 340 59.4
Aa31LG2G10550 Aethionema arabicum HOM05D006958 ORTHO05D008814 8.9e-105 384.4 426 49.8
Nitab4.5_0004654g0020 Nicotiana tabacum HOM05D006958 ORTHO05D008814 8.9e-105 384.4 340 58.5
CAN.G724.27 Capsicum annuum HOM05D006958 ORTHO05D008814 2.0e-104 383.3 333 58.9
Lj5g0000926 Lotus japonicus HOM05D006958 ORTHO05D008814 2.6e-104 382.9 338 59.5
BcaB04g20216 Brassica carinata HOM05D006958 ORTHO05D008814 3.4e-104 382.5 338 60.1
Lj4A758G77 Lonicera japonica HOM05D006958 ORTHO05D008814 2.4e-102 376.3 382 53.1
Migut.N02783 Erythranthe guttata HOM05D006958 ORTHO05D008814 1.2e-101 374.0 338 58.0
SGA_v2.0_scaffold28G11833 Striga asiatica HOM05D006958 ORTHO05D008814 4.6e-101 372.1 338 58.3
TPR.G37796 Trifolium pratense HOM05D006958 ORTHO05D008814 7.8e-101 371.3 338 58.9
Hund05299 Selenicereus undatus HOM05D006958 ORTHO05D008814 1.3e-100 370.5 347 57.1
PGSC0003DMG400010608 Solanum tuberosum HOM05D006958 ORTHO05D008814 1.7e-100 370.2 353 56.7
Glyma.14G089018 Glycine max HOM05D006958 ORTHO05D008814 2.5e-99 366.3 332 60.8
Ca_13215_v3 Cicer arietinum L. HOM05D006958 ORTHO05D008814 3.3e-99 365.9 344 56.1
arahy.Tifrunner.gnm1.ann1.8TQ0W2 Arachis hypogaea HOM05D006958 ORTHO05D008814 2.8e-98 362.8 334 58.4
HanXRQChr08g0229631 Helianthus annuus HOM05D006958 ORTHO05D008814 1.4e-97 360.5 347 55.3
MSTRG.24376 Avicennia marina HOM05D006958 ORTHO05D008814 3.1e-97 359.4 340 56.5
Peaxi162Scf00081g02114 Petunia axillaris HOM05D006958 ORTHO05D008814 9.9e-96 354.4 343 54.8
Aqoxy6G02602 Aquilegia oxysepala HOM05D006958 ORTHO05D008814 1.1e-94 350.9 352 52.6
Lsat_1_v5_gn_6_110920 Lactuca sativa HOM05D006958 ORTHO05D008814 1.1e-94 350.9 349 53.3
PSO541G2153 Papaver somniferum HOM05D006958 ORTHO05D008814 1.1e-94 350.9 346 52.0
Phvul.001G028000 Phaseolus vulgaris HOM05D006958 ORTHO05D008814 1.4e-94 350.5 327 56.0
VMungo0647G0836 Vigna mungo HOM05D006958 ORTHO05D008814 2.4e-94 349.7 305 60.0
EL10Ac1g02379 Beta vulgaris HOM05D006958 ORTHO05D008814 2.1e-93 346.7 275 61.5
PSO675G0096 Papaver somniferum HOM05D006958 ORTHO05D008814 2.1e-93 346.7 348 51.4
Medtr1g018000 Medicago truncatula HOM05D006958 ORTHO05D008814 6.0e-93 345.1 340 55.9
ATR0739G011 Amborella trichopoda HOM05D006958 ORTHO05D008814 4.0e-89 332.4 353 53.5
ECA246G2880 Erigeron canadensis HOM05D006958 ORTHO05D008814 2.0e-88 330.1 283 60.1
unitig_744.g24127 Utricularia gibba HOM05D006958 ORTHO05D008814 4.2e-86 322.4 331 51.4
PSO541G3524 Papaver somniferum HOM05D006958 ORTHO05D008814 2.7e-85 319.7 343 50.7
DCAR_020049 Daucus carota HOM05D006958 ORTHO05D008814 1.0e-84 317.8 340 51.2
HPP92_009523 Vanilla planifolia HOM05D006958 ORTHO05D008814 4.5e-80 302.4 338 49.4
Zm00001eb325900 Zea mays HOM05D006958 ORTHO05D008814 3.8e-79 299.3 336 46.4
GSVIVG01009341001 Vitis vinifera HOM05D006958 ORTHO05D008814 1.0e-76 291.2 212 67.9
Cc10_g05800 Coffea canephora HOM05D006958 ORTHO05D008814 1.1e-70 271.2 212 65.6
CDE04G0359 Ceratophyllum demersum HOM05D006958 ORTHO05D008814 9.3e-62 241.5 245 54.7
Pp3c12_1620 Physcomitrium patens HOM05D006958 ORTHO05D008814 4.2e-54 216.1 288 40.6
Psat6g018160 Pisum sativum HOM05D006958 ORTHO05D008814 1.1e-51 208.0 297 46.1
AUR62022479 Chenopodium quinoa HOM05D006958 ORTHO05D008814 1.7e-47 194.1 175 56.6
Oeu049903.1 Olea europaea HOM05D006958 ORTHO05D008814 2.7e-45 186.8 171 55.0
arahy.Tifrunner.gnm1.ann1.D1UQZZ Arachis hypogaea HOM05D006958 ORTHO05D008814 5.7e-43 179.1 269 42.8
HPP92_009559 Vanilla planifolia HOM05D006958 ORTHO05D008814 1.4e-38 164.5 183 48.1
Os01g0593100 Oryza sativa ssp. japonica HOM05D006958 ORTHO05D008814 5.2e-36 156.0 198 45.5
SMO334G0101 Selaginella moellendorffii HOM05D006958 ORTHO05D008814 4.8e-34 149.4 265 35.1
BolC4t24190H Brassica oleracea HOM05D006958 ORTHO05D008814 1.2e-32 144.8 131 61.1
Os07g0586000 Oryza sativa ssp. japonica HOM05D006958 ORTHO05D008814 1.3e-31 141.4 169 45.6
CBR_g51257 Chara braunii HOM05D006958 ORTHO05D008814 8.5e-31 138.7 314 31.5
Cfa010280 Carpinus fangiana HOM05D006958 ORTHO05D008814 7.2e-30 135.6 93 71.0
SEGI_02529 Sequoiadendron giganteum HOM05D006958 ORTHO05D008814 2.1e-29 134.0 177 40.1
AUR62022480 Chenopodium quinoa HOM05D006958 ORTHO05D008814 3.3e-27 126.7 124 50.8
C04p26140 Brassica napus HOM05D006958 ORTHO05D008814 7.5e-27 125.6 110 60.9
BcaC02g10644 Brassica carinata HOM05D006958 ORTHO05D008814 3.7e-26 123.2 174 44.8
MBI15_g25904_MAGBIO Magnolia biondii HOM05D006958 ORTHO05D017181 5.9e-24 115.9 124 54.0
Psat7g107960 Pisum sativum HOM05D006958 ORTHO05D008814 1.6e-16 91.3 114 48.2
SEGI_26692 Sequoiadendron giganteum HOM05D006958 ORTHO05D008814 3.5e-16 90.1 88 47.7
Glyma.07G264001 Glycine max HOM05D006958 ORTHO05D008814 1.4e-12 78.2 78 55.1
Ah.09g227430 Amaranthus hybridus HOM05D006958 ORTHO05D008814 4.5e-08 63.2 66 53.0
Psat0s3396g0160 Pisum sativum HOM05D006958 ORTHO05D008814 1.9e-06 57.8 39 61.5


User provided reference genes

Program Settings