Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0309361 Rosa chinensis HOM05D004288 ORTHO05D004997 2.0e-59 232.3 118 100.0
FAN27G1232 Fragaria x ananassa HOM05D004288 ORTHO05D004997 3.1e-44 181.8 118 82.2
FAN15G0972 Fragaria x ananassa HOM05D004288 ORTHO05D004997 1.2e-43 179.9 118 82.2
FvH4_2g33280 Fragaria vesca HOM05D004288 ORTHO05D004997 1.5e-43 179.5 118 81.4
FAN24G2538 Fragaria x ananassa HOM05D004288 ORTHO05D004997 1.5e-43 179.5 118 81.4
FAN20G2816 Fragaria x ananassa HOM05D004288 ORTHO05D004997 2.0e-43 179.1 118 81.4
MD15G1071700 Malus domestica HOM05D004288 ORTHO05D004997 2.0e-27 125.9 120 62.5
MD08G1087000 Malus domestica HOM05D004288 ORTHO05D004997 3.5e-24 115.2 122 59.0
Prupe.1G424700 Prunus persica HOM05D004288 ORTHO05D004997 3.5e-24 115.2 122 56.6
GSVIVG01009362001 Vitis vinifera HOM05D004288 ORTHO05D004997 1.5e-19 99.8 122 51.6
Cfa013675 Carpinus fangiana HOM05D004288 ORTHO05D004997 2.0e-19 99.4 115 50.4
Haze_22316 Corylus avellana HOM05D004288 ORTHO05D004997 2.2e-18 95.9 114 50.0
CiPaw.07G176600 Carya illinoinensis HOM05D004288 ORTHO05D004997 2.9e-18 95.5 120 51.7
Dinv44970 Davidia involucrata HOM05D004288 ORTHO05D004997 1.9e-17 92.8 119 49.6
Duzib116G0008 Durio zibethinus HOM05D004288 ORTHO05D004997 2.4e-17 92.4 114 48.2
Thecc.08G091000 Theobroma cacao HOM05D004288 ORTHO05D004997 5.4e-17 91.3 114 49.1
Atru.chr13.813 Acer truncatum HOM05D004288 ORTHO05D004997 1.6e-16 89.7 120 48.3
Potri.014G017600 Populus trichocarpa HOM05D004288 ORTHO05D004997 1.6e-16 89.7 118 48.3
Ciclev10002881m.g Citrus clementina HOM05D004288 ORTHO05D004997 2.1e-16 89.4 115 48.7
Gohir.A05G208400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 2.1e-16 89.4 114 50.0
Duzib041G0778 Durio zibethinus HOM05D004288 ORTHO05D004997 4.6e-16 88.2 115 47.8
Gohir.D05G211900 Gossypium hirsutum HOM05D004288 ORTHO05D004997 1.8e-15 86.3 114 50.0
Gorai.009G218500 Gossypium raimondii HOM05D004288 ORTHO05D004997 1.8e-15 86.3 114 50.0
Rhsim06G0060800 Rhododendron simsii HOM05D004288 ORTHO05D004997 1.8e-15 86.3 112 45.5
EL10As7g23804 Beta vulgaris HOM05D004288 ORTHO05D004997 2.3e-15 85.9 118 51.7
TWI12G0116 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 2.3e-15 85.9 120 48.3
Glyma.17G236500 Glycine max HOM05D004288 ORTHO05D004997 5.1e-15 84.7 124 47.6
CANSAT25G2350 Cannabis sativa HOM05D004288 ORTHO05D004997 6.7e-15 84.3 118 43.2
Glyma.14G087800 Glycine max HOM05D004288 ORTHO05D004997 6.7e-15 84.3 126 47.6
QL12p037641 Quercus lobata HOM05D004288 ORTHO05D004997 6.7e-15 84.3 138 44.2
CSS0041913 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 1.1e-14 83.6 113 41.6
Actinidia10187 Actinidia chinensis HOM05D004288 ORTHO05D004997 1.9e-14 82.8 112 43.8
Actinidia22683 Actinidia chinensis HOM05D004288 ORTHO05D004997 3.3e-14 82.0 112 42.9
Manes.18G045000 Manihot esculenta HOM05D004288 ORTHO05D004997 4.3e-14 81.6 114 45.6
TAR628G0045 Trochodendron aralioides HOM05D004288 ORTHO05D004997 4.3e-14 81.6 118 44.1
TWI56G0562 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 9.6e-14 80.5 120 46.7
vmacro21447 Vaccinium macrocarpon HOM05D004288 ORTHO05D004997 3.7e-13 78.6 112 44.6
Dinv39247 Davidia involucrata HOM05D004288 ORTHO05D004997 8.1e-13 77.4 119 42.0
Gorai.010G024900 Gossypium raimondii HOM05D004288 ORTHO05D004997 1.1e-12 77.0 116 50.0
CiPaw.13G085100 Carya illinoinensis HOM05D004288 ORTHO05D004997 1.4e-12 76.6 81 54.3
Hund14391 Selenicereus undatus HOM05D004288 ORTHO05D004997 1.4e-12 76.6 85 52.9
CiPaw.08G113500 Carya illinoinensis HOM05D004288 ORTHO05D004997 2.4e-12 75.9 70 54.3
Cc10_g05620 Coffea canephora HOM05D004288 ORTHO05D004997 2.4e-12 75.9 117 40.2
CsaV3_4G034910 Cucumis sativus L. HOM05D004288 ORTHO05D003449 2.4e-12 75.9 83 47.0
TAR376G0993 Trochodendron aralioides HOM05D004288 ORTHO05D004997 4.0e-12 75.1 119 41.2
Actinidia38098 Actinidia chinensis HOM05D004288 ORTHO05D004997 5.3e-12 74.7 114 39.5
CSS0005181 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 5.3e-12 74.7 126 39.7
Sed0012219 Sechium edule HOM05D004288 ORTHO05D004997 5.3e-12 74.7 53 64.2
CiPaw.08G049000 Carya illinoinensis HOM05D004288 ORTHO05D004997 6.9e-12 74.3 122 46.7
PSO541G1266 Papaver somniferum HOM05D004288 ORTHO05D004997 6.9e-12 74.3 121 38.8
Phvul.001G026500 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 6.9e-12 74.3 124 42.7
Migut.C00495 Erythranthe guttata HOM05D004288 ORTHO05D004997 9.0e-12 73.9 120 40.8
Gohir.A06G023200 Gossypium hirsutum HOM05D004288 ORTHO05D004997 9.0e-12 73.9 116 47.4
Gohir.D06G020400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 9.0e-12 73.9 116 49.1
Cpa.g.sc21.102 Carica papaya HOM05D004288 ORTHO05D004997 1.2e-11 73.6 111 40.5
Peaxi162Scf00081g01322 Petunia axillaris HOM05D004288 ORTHO05D004997 1.2e-11 73.6 87 46.0
Sed0026714 Sechium edule HOM05D004288 ORTHO05D004997 1.2e-11 73.6 111 43.2
PGSC0003DMG400021529 Solanum tuberosum HOM05D004288 ORTHO05D004997 1.2e-11 73.6 124 41.1
Sed0005367 Sechium edule HOM05D004288 ORTHO05D004997 1.5e-11 73.2 110 40.0
SalBow6G1935 Salvia bowleyana HOM05D004288 ORTHO05D004997 2.0e-11 72.8 100 45.0
SalBow8G0960 Salvia bowleyana HOM05D004288 ORTHO05D004997 2.0e-11 72.8 100 45.0
ClCG05G020460 Citrullus lanatus HOM05D004288 ORTHO05D004997 2.6e-11 72.4 94 47.9
SalBow7G4748 Salvia bowleyana HOM05D004288 ORTHO05D004997 2.6e-11 72.4 75 46.7
Ah.05g167180 Amaranthus hybridus HOM05D004288 ORTHO05D004997 3.4e-11 72.0 119 43.7
Sopen04g031610 Solanum pennellii HOM05D004288 ORTHO05D004997 3.4e-11 72.0 81 53.1
TPR.G11815 Trifolium pratense HOM05D004288 ORTHO05D004997 3.4e-11 72.0 116 38.8
Hma1.2p1_0819F.1_g223820 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 4.5e-11 71.6 109 45.9
PSO675G1665 Papaver somniferum HOM05D004288 ORTHO05D004997 4.5e-11 71.6 119 37.8
GSVIVG01037855001 Vitis vinifera HOM05D004288 ORTHO05D004997 4.5e-11 71.6 119 41.2
Oeu057368.1 Olea europaea HOM05D004288 ORTHO05D004997 5.8e-11 71.2 112 42.9
Zm00001eb007460 Zea mays HOM05D004288 ORTHO05D004997 5.8e-11 71.2 63 54.0
COL.COLO4_28524 Corchorus olitorius HOM05D004288 ORTHO05D004997 9.9e-11 70.5 80 56.2
Sc02g0007800 Simmondsia chinensis HOM05D003189 ORTHO05D003449 1.3e-10 70.1 109 38.5
HanXRQChr01g0027971 Helianthus annuus HOM05D004288 ORTHO05D004997 1.7e-10 69.7 108 41.7
Solyc04g078010.4 Solanum lycopersicum HOM05D004288 ORTHO05D004997 1.7e-10 69.7 80 52.5
MELO3C032376.2 Cucumis melo HOM05D004288 ORTHO05D004997 2.9e-10 68.9 56 60.7
Nitab4.5_0000569g0070 Nicotiana tabacum HOM05D004288 ORTHO05D004997 2.9e-10 68.9 76 47.4
Os03g0206201 Oryza sativa ssp. japonica HOM05D004288 ORTHO05D004997 2.9e-10 68.9 81 49.4
TAR636G2516 Trochodendron aralioides HOM05D004288 ORTHO05D004997 2.9e-10 68.9 90 44.4
Hma1.2p1_0210F.1_g089620 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 6.4e-10 67.8 82 47.6
MBI16_g22811_MAGBIO Magnolia biondii HOM05D004288 ORTHO05D004997 6.4e-10 67.8 120 40.0
Medtr1g018470 Medicago truncatula HOM05D004288 ORTHO05D004997 6.4e-10 67.8 107 41.1
Medtr1g418505 Medicago truncatula HOM05D004288 ORTHO05D004997 6.4e-10 67.8 107 41.1
CDE04G1463 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 8.4e-10 67.4 65 56.9
Nitab4.5_0014410g0020 Nicotiana tabacum HOM05D004288 ORTHO05D004997 8.4e-10 67.4 44 61.4
Sabra14G0011500 Salix brachista HOM05D004288 ORTHO05D004997 8.4e-10 67.4 80 50.0
CDE06G1799 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 1.1e-09 67.0 87 49.4
ClCG05G020480 Citrullus lanatus HOM05D004288 ORTHO05D004997 1.1e-09 67.0 82 43.9
Peaxi162Scf00160g00120 Petunia axillaris HOM05D004288 ORTHO05D004997 1.1e-09 67.0 82 52.4
MELO3C016806.2 Cucumis melo HOM05D004288 ORTHO05D004997 1.4e-09 66.6 123 36.6
ECA232G2356 Erigeron canadensis HOM05D004288 ORTHO05D004997 1.4e-09 66.6 121 38.8
Nitab4.5_0011511g0010 Nicotiana tabacum HOM05D004288 ORTHO05D004997 1.9e-09 66.2 54 61.1
Eucgr.F00116 Eucalyptus grandis HOM05D004288 ORTHO05D004997 2.4e-09 65.9 120 40.0
THA.LOC104801605 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 3.2e-09 65.5 105 36.2
Aqoxy6G02704 Aquilegia oxysepala HOM05D004288 ORTHO05D004997 5.5e-09 64.7 106 39.6
CiPaw.04G152800 Carya illinoinensis HOM05D004288 ORTHO05D004997 9.3e-09 63.9 76 51.3
Solyc12g088410.3 Solanum lycopersicum HOM05D004288 ORTHO05D004997 9.3e-09 63.9 50 68.0
Sopen12g030390 Solanum pennellii HOM05D004288 ORTHO05D004997 9.3e-09 63.9 77 51.9
CAN.G107.3 Capsicum annuum HOM05D004288 ORTHO05D004997 1.2e-08 63.5 81 50.6
PGSC0003DMG401011559 Solanum tuberosum HOM05D004288 ORTHO05D004997 1.2e-08 63.5 50 66.0
Nitab4.5_0000934g0110 Nicotiana tabacum HOM05D004288 ORTHO05D004997 2.1e-08 62.8 48 58.3
Rhsim07G0221200 Rhododendron simsii HOM05D004288 ORTHO05D004997 2.1e-08 62.8 58 55.2
VMungo0647G1919 Vigna mungo HOM05D004288 ORTHO05D004997 2.1e-08 62.8 123 38.2
MSTRG.22227 Avicennia marina HOM05D004288 ORTHO05D004997 2.7e-08 62.4 104 42.3
DCAR_012811 Daucus carota HOM05D004288 ORTHO05D004997 2.7e-08 62.4 73 45.2
Lj3g0011225 Lotus japonicus HOM05D004288 ORTHO05D004997 2.7e-08 62.4 115 38.3
CANSAT54G1812 Cannabis sativa HOM05D004288 ORTHO05D004997 3.5e-08 62.0 60 50.0
PGR031G3267 Punica granatum HOM05D004288 ORTHO05D004997 3.5e-08 62.0 100 41.0
AUR62024064 Chenopodium quinoa HOM05D004288 ORTHO05D004997 4.6e-08 61.6 61 55.7
AUR62029595 Chenopodium quinoa HOM05D004288 ORTHO05D004997 4.6e-08 61.6 65 53.8
THA.LOC104825767 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 6.0e-08 61.2 114 36.8
Psat6g015560 Pisum sativum HOM05D004288 ORTHO05D004997 7.9e-08 60.8 116 36.2
Lj6g0004688 Lotus japonicus HOM05D004288 ORTHO05D004997 1.8e-07 59.7 106 34.9
AT5G01075 Arabidopsis thaliana HOM05D004288 ORTHO05D004997 2.3e-07 59.3 51 62.7
Nn1g04602 Nelumbo nucifera HOM05D004288 ORTHO05D004997 2.3e-07 59.3 122 36.9
SGA_v2.0_scaffold14G06935 Striga asiatica HOM05D004288 ORTHO05D004997 2.3e-07 59.3 73 46.6
AUR62041737 Chenopodium quinoa HOM05D004288 ORTHO05D004997 3.9e-07 58.5 95 42.1
HanXRQChr09g0266571 Helianthus annuus HOM05D004288 ORTHO05D004997 3.9e-07 58.5 114 41.2
Lsat_1_v5_gn_4_130821 Lactuca sativa HOM05D004288 ORTHO05D004997 5.1e-07 58.2 55 56.4
unitig_8.g4880 Utricularia gibba HOM05D004288 ORTHO05D004997 5.1e-07 58.2 61 47.5
Thhalv10015166m.g Eutrema salsugineum HOM05D004288 ORTHO05D004997 6.7e-07 57.8 53 58.5
HanXRQChr11g0341661 Helianthus annuus HOM05D004288 ORTHO05D004997 8.7e-07 57.4 82 43.9
TPR.G3776 Trifolium pratense HOM05D004288 ORTHO05D004997 8.7e-07 57.4 82 40.2
Carub.0006s0080 Capsella rubella HOM05D004288 ORTHO05D004997 1.5e-06 56.6 49 61.2
SGA_v2.0_scaffold238G43969 Striga asiatica HOM05D004288 ORTHO05D004997 1.5e-06 56.6 37 64.9
TAR381G1169 Trochodendron aralioides HOM05D004288 ORTHO05D004997 1.9e-06 56.2 82 42.7
MSTRG.1030 Avicennia marina HOM05D004288 ORTHO05D004997 2.5e-06 55.8 103 36.9
BolC2t06031H Brassica oleracea HOM05D004288 ORTHO05D004997 3.3e-06 55.5 48 56.2
BraA02t04704Z Brassica rapa HOM05D004288 ORTHO05D004997 3.3e-06 55.5 48 58.3
BcaC03g13064 Brassica carinata HOM05D004288 ORTHO05D004997 4.3e-06 55.1 48 56.2
C02p00310 Brassica napus HOM05D004288 ORTHO05D004997 4.3e-06 55.1 48 56.2
Sp6g40470 Schrenkiella parvula HOM05D004288 ORTHO05D004997 7.4e-06 54.3 36 69.4
CDE04G1843 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 9.6e-06 53.9 53 49.1


User provided reference genes

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