Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0308841 Rosa chinensis HOM05D006103 ORTHO05D007468 9.3e-38 159.8 88 100.0
RcHm_v2.0_Chr7g0206421 Rosa chinensis HOM05D006103 ORTHO05D007468 4.6e-21 104.4 135 57.0
FAN08G0488 Fragaria x ananassa HOM05D006103 ORTHO05D007468 1.6e-18 95.9 124 57.3
FvH4_5g20690 Fragaria vesca HOM05D006103 ORTHO05D007468 2.8e-18 95.1 130 55.4
FAN18G2558 Fragaria x ananassa HOM05D006103 ORTHO05D007468 3.7e-18 94.7 131 55.0
FAN04G1103 Fragaria x ananassa HOM05D006103 ORTHO05D007468 5.9e-16 87.4 119 55.5
FAN13G0941 Fragaria x ananassa HOM05D006103 ORTHO05D007468 5.9e-16 87.4 122 54.1
RcHm_v2.0_Chr4g0446321 Rosa chinensis HOM05D006103 ORTHO05D007468 3.3e-11 71.6 44 72.7
Prupe.5G053300 Prunus persica HOM05D006103 ORTHO05D007468 1.4e-09 66.2 120 43.3
MD04G1054200 Malus domestica HOM05D006103 ORTHO05D007468 2.4e-09 65.5 126 44.4
TAR375G0262 Trochodendron aralioides HOM05D006103 ORTHO05D007468 9.1e-09 63.5 70 48.6
PGR042G3635 Punica granatum HOM05D006103 ORTHO05D007468 4.5e-08 61.2 70 48.6
Actinidia03414 Actinidia chinensis HOM05D006103 ORTHO05D007468 7.7e-08 60.5 30 90.0
Hma1.2p1_1672F.1_g296810 Hydrangea macrophylla HOM05D006103 ORTHO05D007468 7.7e-08 60.5 30 90.0
Nitab4.5_0000506g0180 Nicotiana tabacum HOM05D006103 ORTHO05D007468 7.7e-08 60.5 30 90.0
BcaC03g16934 Brassica carinata HOM05D006103 ORTHO05D007468 1.3e-07 59.7 72 43.1
C02p48360 Brassica napus HOM05D006103 ORTHO05D007468 1.3e-07 59.7 72 43.1
BolC2t10867H Brassica oleracea HOM05D006103 ORTHO05D007468 1.3e-07 59.7 72 43.1
CAN.G422.12 Capsicum annuum HOM05D006103 ORTHO05D007468 1.7e-07 59.3 30 86.7
CiPaw.11G084400 Carya illinoinensis HOM05D006103 ORTHO05D007468 1.7e-07 59.3 30 86.7
Dinv25153 Davidia involucrata HOM05D006103 ORTHO05D007468 1.7e-07 59.3 30 86.7
Nitab4.5_0013289g0030 Nicotiana tabacum HOM05D006103 ORTHO05D007468 1.7e-07 59.3 30 86.7
GSVIVG01013285001 Vitis vinifera HOM05D006103 ORTHO05D007468 1.7e-07 59.3 30 86.7
A02p30800 Brassica napus HOM05D006103 ORTHO05D007468 2.2e-07 58.9 72 43.1
BraA02t08094Z Brassica rapa HOM05D006103 ORTHO05D007468 2.2e-07 58.9 72 43.1
Cc08_g11160 Coffea canephora HOM05D006103 ORTHO05D007468 2.2e-07 58.9 30 86.7
Solyc06g060990.4 Solanum lycopersicum HOM05D006103 ORTHO05D007468 2.2e-07 58.9 30 83.3
Sopen06g021130 Solanum pennellii HOM05D006103 ORTHO05D007468 2.2e-07 58.9 30 83.3
PGSC0003DMG400026583 Solanum tuberosum HOM05D006103 ORTHO05D007468 2.2e-07 58.9 30 83.3
VMungo0251G0880 Vigna mungo HOM05D006103 ORTHO05D007468 2.2e-07 58.9 70 48.6
arahy.Tifrunner.gnm1.ann1.GKQN4T Arachis hypogaea HOM05D006103 ORTHO05D007468 2.9e-07 58.5 43 65.1
CSS0027189 Camellia sinensis var. sinensis HOM05D006103 ORTHO05D007468 2.9e-07 58.5 30 86.7
Cpa.g.sc98.70 Carica papaya HOM05D006103 ORTHO05D007468 2.9e-07 58.5 30 86.7
Potri.001G149800 Populus trichocarpa HOM05D006103 ORTHO05D007468 2.9e-07 58.5 30 83.3
Sabra01G0119800 Salix brachista HOM05D006103 ORTHO05D007468 2.9e-07 58.5 30 83.3
MSTRG.13771 Avicennia marina HOM05D006103 ORTHO05D007468 3.8e-07 58.2 30 83.3
Phvul.003G226000 Phaseolus vulgaris HOM05D006103 ORTHO05D007468 3.8e-07 58.2 70 48.6
QL12p008443 Quercus lobata HOM05D006103 ORTHO05D007468 3.8e-07 58.2 30 83.3
Eucgr.E00334 Eucalyptus grandis HOM05D006103 ORTHO05D007468 5.0e-07 57.8 30 86.7
MBI04_g46823_MAGBIO Magnolia biondii HOM05D006103 ORTHO05D007468 5.0e-07 57.8 30 80.0
Sc22g0001160 Simmondsia chinensis HOM05D006103 ORTHO05D007468 5.0e-07 57.8 30 86.7
ATR0665G401 Amborella trichopoda HOM05D006103 ORTHO05D007468 6.5e-07 57.4 76 42.1
CSS0016826 Camellia sinensis var. sinensis HOM05D006103 ORTHO05D007468 6.5e-07 57.4 30 83.3
ClCG10G002100 Citrullus lanatus HOM05D006103 ORTHO05D007468 6.5e-07 57.4 30 83.3
MELO3C013891.2 Cucumis melo HOM05D006103 ORTHO05D007468 6.5e-07 57.4 30 83.3
CsaV3_3G002190 Cucumis sativus L. HOM05D006103 ORTHO05D007468 6.5e-07 57.4 30 83.3
Peaxi162Scf00190g00616 Petunia axillaris HOM05D006103 ORTHO05D007468 8.5e-07 57.0 30 83.3
Hund11307 Selenicereus undatus HOM05D006103 ORTHO05D007468 8.5e-07 57.0 30 83.3
Atru.chr9.1156 Acer truncatum HOM05D006103 ORTHO05D007468 1.1e-06 56.6 30 86.7
Migut.E01036 Erythranthe guttata HOM05D006103 ORTHO05D007468 1.1e-06 56.6 30 83.3
Migut.E01310 Erythranthe guttata HOM05D006103 ORTHO05D007468 1.1e-06 56.6 30 83.3
Glyma.05G067000 Glycine max HOM05D006103 ORTHO05D007468 1.1e-06 56.6 70 47.1
Oeu054287.1 Olea europaea HOM05D006103 ORTHO05D007468 1.1e-06 56.6 30 86.7
Actinidia02205 Actinidia chinensis HOM05D006103 ORTHO05D007468 1.4e-06 56.2 30 86.7
C02p28550 Brassica napus HOM05D006103 ORTHO05D007468 1.4e-06 56.2 70 41.4
BolC2t08897H Brassica oleracea HOM05D006103 ORTHO05D007468 1.4e-06 56.2 70 41.4
AUR62007192 Chenopodium quinoa HOM05D006103 ORTHO05D007468 1.4e-06 56.2 30 83.3
AUR62018811 Chenopodium quinoa HOM05D006103 ORTHO05D007468 1.4e-06 56.2 30 83.3
Lj4g0004061 Lotus japonicus HOM05D006103 ORTHO05D007468 1.4e-06 56.2 43 62.8
EL10Ac5g12236 Beta vulgaris HOM05D006103 ORTHO05D007468 1.9e-06 55.8 73 42.5
Haze_08348 Corylus avellana HOM05D006103 ORTHO05D007468 1.9e-06 55.8 30 80.0
Lj8A286T53 Lonicera japonica HOM05D006103 ORTHO05D007468 1.9e-06 55.8 30 80.0
Lj8C280G0 Lonicera japonica HOM05D006103 ORTHO05D007468 1.9e-06 55.8 30 80.0
Os06g0139700 Oryza sativa ssp. japonica HOM05D006103 ORTHO05D007468 1.9e-06 55.8 30 76.7
CANSAT21G0053 Cannabis sativa HOM05D006103 ORTHO05D007468 2.5e-06 55.5 30 83.3
CANSAT21G0160 Cannabis sativa HOM05D001479 ORTHO05D007468 2.5e-06 55.5 30 83.3
CANSAT21G1035 Cannabis sativa HOM05D006103 ORTHO05D007468 2.5e-06 55.5 30 83.3
Dinv28889 Davidia involucrata HOM05D006103 ORTHO05D007468 2.5e-06 55.5 30 80.0
Duzib205G0801 Durio zibethinus HOM05D006103 ORTHO05D007468 2.5e-06 55.5 122 44.3
Sp2g11900 Schrenkiella parvula HOM05D006103 ORTHO05D007468 2.5e-06 55.5 73 41.1
Aqoxy3G02600 Aquilegia oxysepala HOM05D006103 ORTHO05D007468 3.2e-06 55.1 30 80.0
Ca_22022_v3 Cicer arietinum L. HOM05D006103 ORTHO05D007468 3.2e-06 55.1 73 43.8
Thhalv10000969m.g Eutrema salsugineum HOM05D006103 ORTHO05D007468 3.2e-06 55.1 72 41.7
Manes.17G024600 Manihot esculenta HOM05D006103 ORTHO05D007468 3.2e-06 55.1 30 80.0
CDE02G1890 Ceratophyllum demersum HOM05D006103 ORTHO05D007468 4.2e-06 54.7 30 73.3
CDE11G0859 Ceratophyllum demersum HOM05D006103 ORTHO05D007468 4.2e-06 54.7 30 73.3
PSO063G5173 Papaver somniferum HOM05D006103 ORTHO05D007468 4.2e-06 54.7 30 76.7
unitig_699.g19773 Utricularia gibba HOM05D006103 ORTHO05D007468 4.2e-06 54.7 30 80.0
Zm00001eb377550 Zea mays HOM05D006103 ORTHO05D007468 4.2e-06 54.7 30 76.7
Gohir.D08G182200 Gossypium hirsutum HOM05D006103 ORTHO05D007468 5.5e-06 54.3 30 80.0
Gorai.004G191100 Gossypium raimondii HOM05D006103 ORTHO05D007468 5.5e-06 54.3 30 80.0
Thecc.03G237900 Theobroma cacao HOM05D006103 ORTHO05D007468 5.5e-06 54.3 30 80.0
BcaC03g15262 Brassica carinata HOM05D006103 ORTHO05D007468 7.2e-06 53.9 70 40.0
CARHR174300 Cardamine hirsuta HOM05D006103 ORTHO05D007468 7.2e-06 53.9 72 40.3
Sed0003222 Sechium edule HOM05D006103 ORTHO05D007468 7.2e-06 53.9 30 76.7
vmacro00388 Vaccinium macrocarpon HOM05D006103 ORTHO05D007468 7.2e-06 53.9 30 80.0
AT5G47090 Arabidopsis thaliana HOM05D006103 ORTHO05D007468 9.4e-06 53.5 70 41.4
Carub.0008s0066 Capsella rubella HOM05D006103 ORTHO05D007468 9.4e-06 53.5 70 41.4
HanXRQChr03g0089621 Helianthus annuus HOM05D006103 ORTHO05D007468 9.4e-06 53.5 43 58.1


User provided reference genes

Program Settings