Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0308821 Rosa chinensis HOM05D004637 ORTHO05D005320 1.0e-123 446.8 233 100.0
FvH4_2g33730 Fragaria vesca HOM05D004637 ORTHO05D005320 2.2e-118 429.1 238 95.0
RcHm_v2.0_Chr0c32g0501551 Rosa chinensis HOM05D004637 ORTHO05D005320 6.3e-110 401.0 239 90.4
Prupe.1G430800 Prunus persica HOM05D004637 ORTHO05D005320 2.3e-107 392.5 238 84.5
MD15G1077400 Malus domestica HOM05D004637 ORTHO05D005320 2.6e-103 379.0 238 82.4
MD08G1093700 Malus domestica HOM05D004637 ORTHO05D005320 5.7e-103 377.9 238 82.8
FAN15G1438 Fragaria x ananassa HOM05D004637 ORTHO05D005320 9.5e-98 360.5 221 86.0
Hma1.2p1_0360F.1_g135900 Hydrangea macrophylla HOM05D004637 ORTHO05D005320 1.4e-96 356.7 238 76.1
ClCG08G016150 Citrullus lanatus HOM05D004637 ORTHO05D005320 3.1e-96 355.5 233 76.0
FAN27G2280 Fragaria x ananassa HOM05D004637 ORTHO05D005320 3.1e-96 355.5 228 82.9
CSS0035210 Camellia sinensis var. sinensis HOM05D004637 ORTHO05D005320 1.5e-95 353.2 238 74.4
Glyma.17G238800 Glycine max HOM05D004637 ORTHO05D005320 1.5e-95 353.2 238 76.5
TAR381G1093 Trochodendron aralioides HOM05D004637 ORTHO05D005320 5.8e-95 351.3 238 74.8
Glyma.14G085900 Glycine max HOM05D004637 ORTHO05D005320 9.8e-95 350.5 238 75.6
MELO3C010837.2 Cucumis melo HOM05D004637 ORTHO05D005320 1.3e-94 350.1 238 73.9
CsaV3_2G026470 Cucumis sativus L. HOM05D004637 ORTHO05D005320 1.3e-94 350.1 238 73.9
Dinv35927 Davidia involucrata HOM05D004637 ORTHO05D005320 1.3e-94 350.1 238 74.4
Medtr1g018800 Medicago truncatula HOM05D004637 ORTHO05D005320 1.7e-94 349.7 238 77.3
Sed0017846 Sechium edule HOM05D004637 ORTHO05D005320 3.7e-94 348.6 238 72.7
Thecc.08G001300 Theobroma cacao HOM05D004637 ORTHO05D005320 3.7e-94 348.6 238 75.2
Migut.N02728 Erythranthe guttata HOM05D004637 ORTHO05D005320 4.9e-94 348.2 238 74.8
Actinidia08272 Actinidia chinensis HOM05D004637 ORTHO05D005320 6.4e-94 347.8 238 74.4
CAN.G1194.20 Capsicum annuum HOM05D004637 ORTHO05D005320 8.3e-94 347.4 234 73.9
MSTRG.25070 Avicennia marina HOM05D004637 ORTHO05D005320 1.1e-93 347.1 238 74.4
Eucgr.F00183 Eucalyptus grandis HOM05D004637 ORTHO05D005320 1.4e-93 346.7 235 72.8
TPR.G3787 Trifolium pratense HOM05D004637 ORTHO05D005320 1.4e-93 346.7 238 75.2
Dinv39271 Davidia involucrata HOM05D004637 ORTHO05D005320 1.9e-93 346.3 238 74.4
Lj5g0011390 Lotus japonicus HOM05D004637 ORTHO05D005320 3.2e-93 345.5 238 76.9
Potri.014G023800 Populus trichocarpa HOM05D004637 ORTHO05D005320 3.2e-93 345.5 233 73.8
PGSC0003DMG400015434 Solanum tuberosum HOM05D004637 ORTHO05D005320 4.1e-93 345.1 234 74.8
CANSAT54G2334 Cannabis sativa HOM05D004637 ORTHO05D005320 7.0e-93 344.4 240 72.9
QL02p003978 Quercus lobata HOM05D004637 ORTHO05D005320 7.0e-93 344.4 235 72.8
GSVIVG01009436001 Vitis vinifera HOM05D004637 ORTHO05D005320 7.0e-93 344.4 238 75.2
Sopen12g030560 Solanum pennellii HOM05D004637 ORTHO05D005320 9.2e-93 344.0 234 74.4
Cc10_g04860 Coffea canephora HOM05D004637 ORTHO05D005320 1.2e-92 343.6 237 73.8
THA.LOC104824981 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 2.7e-92 342.4 238 72.7
CiPaw.15G052200 Carya illinoinensis HOM05D004637 ORTHO05D005320 6.0e-92 341.3 235 73.6
Gohir.D05G208900 Gossypium hirsutum HOM05D004637 ORTHO05D005320 7.8e-92 340.9 238 73.9
PSO170G3952 Papaver somniferum HOM05D004637 ORTHO05D005320 7.8e-92 340.9 238 70.6
Solyc12g088660.2 Solanum lycopersicum HOM05D004637 ORTHO05D005320 7.8e-92 340.9 234 73.5
Gohir.A05G205600 Gossypium hirsutum HOM05D004637 ORTHO05D005320 1.0e-91 340.5 238 73.5
Manes.05G177100 Manihot esculenta HOM05D004637 ORTHO05D005320 1.3e-91 340.1 235 73.6
PSO210G5934 Papaver somniferum HOM05D004637 ORTHO05D005320 1.7e-91 339.7 238 70.2
Lsat_1_v5_gn_1_22460 Lactuca sativa HOM05D004637 ORTHO05D005320 3.9e-91 338.6 238 70.2
Phvul.001G024600 Phaseolus vulgaris HOM05D004637 ORTHO05D005320 6.6e-91 337.8 238 73.9
Nn5g30394 Nelumbo nucifera HOM05D004637 ORTHO05D005320 1.1e-90 337.0 238 71.0
Atru.chr13.748 Acer truncatum HOM05D004637 ORTHO05D005320 2.5e-90 335.9 235 71.5
Gorai.009G215300 Gossypium raimondii HOM05D004637 ORTHO05D005320 2.5e-90 335.9 239 73.2
Os07g0479200 Oryza sativa ssp. japonica HOM05D004637 ORTHO05D005320 2.5e-90 335.9 234 70.5
TWI36G0292 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 2.1e-89 332.8 238 70.6
TWI56G1297 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 8.1e-89 330.9 238 70.6
Carub.0006s2649 Capsella rubella HOM05D004637 ORTHO05D005320 1.8e-88 329.7 238 70.2
Thhalv10028929m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 1.8e-88 329.7 238 70.6
AL6G41290 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 3.1e-88 328.9 238 69.7
A03p27890 Brassica napus HOM05D004637 ORTHO05D005320 4.0e-88 328.6 238 70.6
BcaB01g02883 Brassica carinata HOM05D004637 ORTHO05D005320 5.2e-88 328.2 238 70.6
C03p33670 Brassica napus HOM05D004637 ORTHO05D005320 5.2e-88 328.2 238 70.6
BolC3t15687H Brassica oleracea HOM05D004637 ORTHO05D005320 5.2e-88 328.2 238 70.6
BraA03t12001Z Brassica rapa HOM05D004637 ORTHO05D005320 5.2e-88 328.2 238 70.6
AT4G07390 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 8.9e-88 327.4 238 69.7
HanXRQChr10g0309661 Helianthus annuus HOM05D004637 ORTHO05D005320 8.9e-88 327.4 238 69.3
unitig_26.g9809 Utricularia gibba HOM05D004637 ORTHO05D005320 1.2e-87 327.0 238 70.6
Sabra14G0016200 Salix brachista HOM05D004637 ORTHO05D005320 1.5e-87 326.6 284 62.7
Sp6g10610 Schrenkiella parvula HOM05D004637 ORTHO05D005320 9.8e-87 323.9 238 70.2
Ah.08g212480 Amaranthus hybridus HOM05D004637 ORTHO05D005320 1.3e-86 323.6 262 64.5
CARHR288440 Cardamine hirsuta HOM05D004637 ORTHO05D005320 1.7e-86 323.2 238 68.5
EL10As7g23788 Beta vulgaris HOM05D004637 ORTHO05D005320 2.2e-86 322.8 274 62.8
PGR031G3707 Punica granatum HOM05D004637 ORTHO05D005320 2.9e-86 322.4 235 68.5
Aa31LG8G3140 Aethionema arabicum HOM05D004637 ORTHO05D005320 4.9e-86 321.6 238 69.3
THA.LOC104825764 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 6.4e-86 321.2 235 66.8
HPP92_003482 Vanilla planifolia HOM05D004637 ORTHO05D005320 6.0e-84 314.7 238 66.0
Lj4A64T29 Lonicera japonica HOM05D004637 ORTHO05D005320 1.3e-83 313.5 308 55.5
CiPaw.16G038000 Carya illinoinensis HOM05D004637 ORTHO05D005320 3.0e-83 312.4 230 68.3
Aqoxy5G01163 Aquilegia oxysepala HOM05D004637 ORTHO05D005320 5.1e-83 311.6 204 76.5
FAN20G0860 Fragaria x ananassa HOM05D004637 ORTHO05D005320 5.1e-83 311.6 228 75.0
Psat6g015000 Pisum sativum HOM05D004637 ORTHO05D005320 2.5e-82 309.3 206 74.8
Oeu045704.1 Olea europaea HOM05D004637 ORTHO05D005320 3.3e-82 308.9 201 76.1
BcaC01g04795 Brassica carinata HOM05D004637 ORTHO05D005320 5.6e-82 308.1 231 69.3
Cfa018057 Carpinus fangiana HOM05D004637 ORTHO05D005320 1.6e-81 306.6 216 74.5
TAR628G0069 Trochodendron aralioides HOM05D004637 ORTHO05D005320 2.1e-81 306.2 208 74.0
Zm00001eb104960 Zea mays HOM05D004637 ORTHO05D005320 2.1e-81 306.2 206 73.8
CDE01G0812 Ceratophyllum demersum HOM05D004637 ORTHO05D005320 6.2e-81 304.7 232 67.2
Nitab4.5_0006004g0010 Nicotiana tabacum HOM05D004637 ORTHO05D005320 6.2e-81 304.7 238 69.3
Eucgr.F02306 Eucalyptus grandis HOM05D004637 ORTHO05D005320 8.1e-81 304.3 238 65.5
Rhsim07G0225500 Rhododendron simsii HOM05D004637 ORTHO05D005320 8.1e-81 304.3 265 62.6
TAR628G0193 Trochodendron aralioides HOM05D004637 ORTHO05D005320 8.1e-81 304.3 208 74.0
VMungo0647G2267 Vigna mungo HOM05D004637 ORTHO05D005320 1.5e-79 300.1 203 75.4
arahy.Tifrunner.gnm1.ann1.RG91LC Arachis hypogaea HOM05D004637 ORTHO05D005320 4.4e-79 298.5 238 67.6
arahy.Tifrunner.gnm1.ann1.UI0UDP Arachis hypogaea HOM05D004637 ORTHO05D005320 4.4e-79 298.5 238 67.6
FAN24G1748 Fragaria x ananassa HOM05D004637 ORTHO05D005320 7.6e-79 297.7 199 81.4
AL8G35940 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 1.7e-78 296.6 235 64.3
SEGI_04928 Sequoiadendron giganteum HOM05D004637 ORTHO05D005320 1.7e-78 296.6 238 63.9
Actinidia38079 Actinidia chinensis HOM05D004637 ORTHO05D005320 2.9e-78 295.8 206 74.3
ECA247G2514 Erigeron canadensis HOM05D004637 ORTHO05D005320 7.1e-77 291.2 205 71.2
CARHR285840 Cardamine hirsuta HOM05D004637 ORTHO05D005320 9.2e-77 290.8 237 61.2
Thhalv10015267m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 9.2e-77 290.8 237 63.3
Ciclev10002344m.g Citrus clementina HOM05D004637 ORTHO05D005320 2.1e-76 289.7 238 62.6
Duzib093G0653 Durio zibethinus HOM05D004637 ORTHO05D005320 2.7e-76 289.3 235 65.5
Carub.0008s2014 Capsella rubella HOM05D004637 ORTHO05D005320 6.6e-75 284.6 235 60.0
Nitab4.5_0006486g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 1.6e-73 280.0 211 68.7
Sc02g0007520 Simmondsia chinensis HOM05D004637 ORTHO05D005320 2.4e-72 276.2 187 71.7
PGR083G2827 Punica granatum HOM05D004637 ORTHO05D005320 5.2e-72 275.0 196 68.4
Peaxi162Scf01087g00125 Petunia axillaris HOM05D004637 ORTHO05D005320 6.9e-72 274.6 198 71.2
BcaC03g14011 Brassica carinata HOM05D004637 ORTHO05D005320 3.8e-70 268.9 235 57.4
BolC2t07347H Brassica oleracea HOM05D004637 ORTHO05D005320 3.8e-70 268.9 235 57.4
A02p07110 Brassica napus HOM05D004637 ORTHO05D005320 4.9e-70 268.5 235 58.3
C02p12470 Brassica napus HOM05D004637 ORTHO05D005320 8.4e-70 267.7 235 57.0
BcaB05g22509 Brassica carinata HOM05D004637 ORTHO05D005320 1.1e-69 267.3 236 58.5
BraA02t05792Z Brassica rapa HOM05D004637 ORTHO05D005320 1.9e-69 266.5 235 57.0
Haze_18072 Corylus avellana HOM05D004637 ORTHO05D005320 7.1e-69 264.6 162 81.5
HPP92_026880 Vanilla planifolia HOM05D004637 ORTHO05D005320 2.1e-68 263.1 189 68.8
Nitab4.5_0004339g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 2.7e-68 262.7 203 66.5
Oeu037612.1 Olea europaea HOM05D004637 ORTHO05D005320 7.8e-68 261.2 166 78.3
SMO365G0080 Selaginella moellendorffii HOM05D004637 ORTHO05D005320 2.5e-66 256.1 229 56.3
Manes.18G041200 Manihot esculenta HOM05D004637 ORTHO05D005320 5.6e-66 255.0 167 76.6
BolC3t13818H Brassica oleracea HOM05D004637 ORTHO05D005320 5.3e-64 248.4 230 55.2
Pp3c3_8350 Physcomitrium patens HOM05D004637 ORTHO05D005320 4.9e-62 241.9 239 52.3
Nitab4.5_0010118g0060 Nicotiana tabacum HOM05D004637 ORTHO05D005320 2.4e-61 239.6 232 56.0
Pp3c4_22670 Physcomitrium patens HOM05D004637 ORTHO05D005320 1.0e-59 234.2 236 50.8
Mapoly0040s0013 Marchantia polymorpha HOM05D004637 ORTHO05D005320 2.3e-59 233.0 220 53.6
vmacro21608 Vaccinium macrocarpon HOM05D004637 ORTHO05D005320 3.0e-59 232.6 151 77.5
CBR_g40794 Chara braunii HOM05D004637 ORTHO05D005320 4.8e-57 225.3 226 54.9
Peaxi162Scf00160g00034 Petunia axillaris HOM05D004637 ORTHO05D005320 4.8e-57 225.3 147 74.8
CBR_g8228 Chara braunii HOM05D004637 ORTHO05D005320 7.6e-55 218.0 223 52.9
AagrBONN_evm.TU.Sc2ySwM_344.2883 Anthoceros agrestis HOM05D004637 ORTHO05D005320 1.4e-45 187.2 169 54.4
SalBow7G4009 Salvia bowleyana HOM05D004637 ORTHO05D005320 3.5e-44 182.6 126 73.0
Sp6g21160 Schrenkiella parvula HOM05D004637 ORTHO05D005320 1.6e-41 173.7 135 64.4
AT5G59470 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 2.8e-41 172.9 135 63.7
Lalb_Chr22g0354931 Lupinus albus HOM05D004637 ORTHO05D005320 2.8e-41 172.9 111 76.6
QL07p047618 Quercus lobata HOM05D004637 ORTHO05D005320 2.5e-37 159.8 103 72.8
AUR62002897 Chenopodium quinoa HOM05D004637 ORTHO05D005320 5.5e-37 158.7 238 43.3
Lalb_Chr22g0354941 Lupinus albus HOM05D004637 ORTHO05D005320 1.2e-36 157.5 106 76.4
Hund04212 Selenicereus undatus HOM05D004637 ORTHO05D005320 3.6e-36 156.0 238 42.4
BcaC01g04787 Brassica carinata HOM05D004637 ORTHO05D005320 5.1e-35 152.1 240 43.3
Cpa.g.sc21.155 Carica papaya HOM05D004637 ORTHO05D005320 7.4e-34 148.3 104 73.1
AUR62035253 Chenopodium quinoa HOM05D004637 ORTHO05D005320 3.1e-32 142.9 106 66.0
SGA_v2.0_scaffold588G53062 Striga asiatica HOM05D004637 ORTHO05D005320 4.5e-31 139.0 263 37.3
BcaB01g04583 Brassica carinata HOM05D004637 ORTHO05D005320 1.6e-28 130.6 142 47.2
SGA_v2.0_scaffold137G35065 Striga asiatica HOM05D004637 ORTHO05D005320 1.6e-28 130.6 98 66.3
PRCOL_00005305 Prasinoderma coloniale HOM05D004637 ORTHO05D005320 2.3e-27 126.7 215 37.2
Cre17.g722500 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 6.9e-24 115.2 228 32.9
RcHm_v2.0_Chr1g0356881 Rosa chinensis HOM05D004637 ORTHO05D005320 5.0e-22 109.0 158 48.1
QL11p041834 Quercus lobata HOM05D001716 ORTHO05D004234 3.2e-21 106.3 98 58.2
Cc02_g27600 Coffea canephora HOM05D004637 ORTHO05D005320 3.9e-19 99.4 74 62.2
Peaxi162Scf00160g00024 Petunia axillaris HOM05D004637 ORTHO05D005320 1.7e-17 94.0 70 72.9
MCO13G491 Micromonas commoda HOM05D004637 ORTHO05D005320 2.2e-17 93.6 219 32.0
MCO13G508 Micromonas commoda HOM05D004637 ORTHO05D005320 2.2e-17 93.6 219 32.0
Pp3c10_370 Physcomitrium patens HOM05D004637 ORTHO05D005320 7.2e-13 78.6 79 50.6
Ca_13257_v3 Cicer arietinum L. HOM05D004637 ORTHO05D005320 9.4e-13 78.2 52 71.2
Cre06.g261300 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 2.1e-12 77.0 203 31.5
COL.COLO4_10117 Corchorus olitorius HOM05D004637 ORTHO05D005320 8.0e-12 75.1 45 77.8
Peaxi162Scf00160g00035 Petunia axillaris HOM05D004637 ORTHO05D005320 2.3e-11 73.6 45 73.3
BcaB02g11171 Brassica carinata HOM05D037786 ORTHO05D091371 2.8e-09 66.6 48 60.4
BcaC01g06520 Brassica carinata HOM05D004637 ORTHO05D005320 3.5e-07 59.7 42 64.3
ATR0706G173 Amborella trichopoda HOM05D004637 ORTHO05D005320 4.5e-07 59.3 58 53.4
HPP92_014526 Vanilla planifolia HOM05D004637 ORTHO05D005320 5.0e-06 55.8 44 52.3


User provided reference genes

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