Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0308461 Rosa chinensis HOM05D005090 ORTHO05D006142 2.0e-95 352.4 179 100.0
FAN27G2315 Fragaria x ananassa HOM05D005090 ORTHO05D006142 1.1e-85 320.1 179 91.1
FAN20G1047 Fragaria x ananassa HOM05D005090 ORTHO05D006142 9.2e-85 317.0 179 90.5
FvH4_2g33950 Fragaria vesca HOM05D005090 ORTHO05D006142 1.6e-84 316.2 179 90.5
FAN24G0633 Fragaria x ananassa HOM05D005090 ORTHO05D006142 1.6e-84 316.2 179 90.5
FAN15G0851 Fragaria x ananassa HOM05D005090 ORTHO05D006142 2.1e-84 315.8 179 91.1
MD08G1095400 Malus domestica HOM05D005090 ORTHO05D006142 3.7e-65 251.9 180 74.4
Prupe.1G431400 Prunus persica HOM05D005090 ORTHO05D006142 2.4e-64 249.2 179 74.3
Gorai.010G022500 Gossypium raimondii HOM05D005090 ORTHO05D006142 2.0e-63 246.1 179 72.1
Gohir.D06G019036 Gossypium hirsutum HOM05D005090 ORTHO05D006142 1.3e-62 243.4 179 70.4
Cfa009959 Carpinus fangiana HOM05D005090 ORTHO05D006142 3.8e-62 241.9 179 72.1
MD15G1077900 Malus domestica HOM05D005090 ORTHO05D006142 7.1e-61 237.7 180 71.7
CiPaw.15G053600 Carya illinoinensis HOM05D005090 ORTHO05D006142 1.2e-60 236.9 180 71.7
Duzib093G0455 Durio zibethinus HOM05D005090 ORTHO05D006142 2.1e-60 236.1 175 71.4
Phvul.001G024300 Phaseolus vulgaris HOM05D005090 ORTHO05D006142 8.7e-59 230.7 174 69.5
Atru.chr13.741 Acer truncatum HOM05D005090 ORTHO05D006142 4.3e-58 228.4 179 67.6
Duzib041G0676 Durio zibethinus HOM05D005090 ORTHO05D006142 5.7e-58 228.0 175 69.1
VMungo0647G1453 Vigna mungo HOM05D005090 ORTHO05D006142 7.4e-58 227.6 174 69.5
GSVIVG01009445001 Vitis vinifera HOM05D005090 ORTHO05D006142 1.6e-57 226.5 167 69.5
Glyma.14G085300 Glycine max HOM05D005090 ORTHO05D006142 2.8e-57 225.7 174 69.0
TAR376G0388 Trochodendron aralioides HOM05D005090 ORTHO05D006142 2.8e-57 225.7 172 66.3
Manes.18G040700 Manihot esculenta HOM05D005090 ORTHO05D006142 6.2e-57 224.6 175 69.1
Lalb_Chr22g0354971 Lupinus albus HOM05D005090 ORTHO05D006142 1.1e-56 223.8 171 68.4
Duzib116G0889 Durio zibethinus HOM05D005090 ORTHO05D006142 2.4e-56 222.6 175 66.9
Glyma.17G239400 Glycine max HOM05D005090 ORTHO05D006142 2.4e-56 222.6 172 67.4
Cpa.g.sc21.163 Carica papaya HOM05D005090 ORTHO05D006142 5.3e-56 221.5 180 67.2
Ciclev10002608m.g Citrus clementina HOM05D005090 ORTHO05D006142 1.5e-55 219.9 179 63.1
Lj5g0006850 Lotus japonicus HOM05D005090 ORTHO05D006142 2.0e-55 219.5 173 69.4
TWI36G0811 Tripterygium wilfordii HOM05D005090 ORTHO05D006142 2.0e-55 219.5 186 66.7
Actinidia22653 Actinidia chinensis HOM05D005090 ORTHO05D006142 3.4e-55 218.8 177 66.7
arahy.Tifrunner.gnm1.ann1.LLUM42 Arachis hypogaea HOM05D005090 ORTHO05D006142 1.0e-54 217.2 176 67.0
arahy.Tifrunner.gnm1.ann1.Q1327U Arachis hypogaea HOM05D005090 ORTHO05D006142 1.0e-54 217.2 176 67.0
Ca_13273_v3 Cicer arietinum L. HOM05D005090 ORTHO05D006142 5.0e-54 214.9 174 65.5
Medtr1g018930 Medicago truncatula HOM05D005090 ORTHO05D006142 6.5e-54 214.5 172 65.1
Potri.014G024500 Populus trichocarpa HOM05D005090 ORTHO05D006142 1.4e-53 213.4 174 69.0
Actinidia01086 Actinidia chinensis HOM05D005090 ORTHO05D006142 2.5e-53 212.6 176 64.8
Aqoxy6G01237 Aquilegia oxysepala HOM05D005090 ORTHO05D006142 5.5e-53 211.5 151 70.2
Haze_18058 Corylus avellana HOM05D005090 ORTHO05D006142 9.3e-53 210.7 244 51.6
Oeu009772.1 Olea europaea HOM05D005090 ORTHO05D006142 9.3e-53 210.7 179 62.0
CANSAT25G3428 Cannabis sativa HOM05D005090 ORTHO05D006142 1.6e-52 209.9 152 71.7
ClCG05G020140 Citrullus lanatus HOM05D005090 ORTHO05D006142 2.1e-52 209.5 180 63.3
Nitab4.5_0004730g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 7.9e-52 207.6 186 60.8
Sabra14G0016700 Salix brachista HOM05D005090 ORTHO05D006142 7.9e-52 207.6 172 66.3
Thecc.08G002400 Theobroma cacao HOM05D005090 ORTHO05D006142 1.8e-51 206.5 175 62.3
Rhsim06G0054600 Rhododendron simsii HOM05D005090 ORTHO05D006142 2.3e-51 206.1 180 62.2
CSS0005413 Camellia sinensis var. sinensis HOM05D005090 ORTHO05D006142 1.1e-50 203.8 182 63.7
COL.COLO4_10129 Corchorus olitorius HOM05D005090 ORTHO05D006142 1.5e-50 203.4 207 57.5
Nitab4.5_0002548g0010 Nicotiana tabacum HOM05D005090 ORTHO05D006142 1.9e-50 203.0 184 57.6
CANSAT56G0556 Cannabis sativa HOM05D005090 ORTHO05D006142 5.7e-50 201.4 188 61.7
Potri.002G123400 Populus trichocarpa HOM05D005090 ORTHO05D006142 7.4e-50 201.1 168 66.1
Peaxi162Scf00121g00414 Petunia axillaris HOM05D005090 ORTHO05D006142 9.7e-50 200.7 181 60.2
Sopen04g032180 Solanum pennellii HOM05D005090 ORTHO05D006142 9.7e-50 200.7 184 56.0
PGSC0003DMG400007949 Solanum tuberosum HOM05D005090 ORTHO05D006142 1.6e-49 199.9 182 57.1
MELO3C016776.2 Cucumis melo HOM05D005090 ORTHO05D006142 3.7e-49 198.7 182 60.4
Sed0019095 Sechium edule HOM05D005090 ORTHO05D006142 3.7e-49 198.7 179 59.8
Eucgr.F02314 Eucalyptus grandis HOM05D005090 ORTHO05D006142 4.8e-49 198.4 139 69.8
Haze_18064 Corylus avellana HOM05D005090 ORTHO05D006142 8.2e-49 197.6 281 45.2
Nn1g04760 Nelumbo nucifera HOM05D005090 ORTHO05D006142 8.2e-49 197.6 179 62.6
MBI16_g23060_MAGBIO Magnolia biondii HOM05D005090 ORTHO05D006142 5.3e-48 194.9 171 62.0
Sed0001046 Sechium edule HOM05D005090 ORTHO05D006142 5.3e-48 194.9 149 67.8
Solyc04g078600.3 Solanum lycopersicum HOM05D005090 ORTHO05D006142 9.0e-48 194.1 188 54.3
MD17G1062600 Malus domestica HOM05D005090 ORTHO05D006142 1.2e-47 193.7 152 71.1
PGR031G1041 Punica granatum HOM05D005090 ORTHO05D006142 2.6e-47 192.6 175 60.0
MSTRG.1060 Avicennia marina HOM05D005090 ORTHO05D006142 3.4e-47 192.2 179 57.5
CAN.G1030.34 Capsicum annuum HOM05D005090 ORTHO05D006142 3.4e-47 192.2 192 53.1
Sc15g0005920 Simmondsia chinensis HOM05D005090 ORTHO05D006142 3.4e-47 192.2 171 61.4
AUR62036618 Chenopodium quinoa HOM05D005090 ORTHO05D006142 5.9e-47 191.4 156 66.7
Nn5g30374 Nelumbo nucifera HOM05D005090 ORTHO05D006142 1.7e-46 189.9 170 61.8
SalBow7G1773 Salvia bowleyana HOM05D005090 ORTHO05D006142 8.5e-46 187.6 175 55.4
THA.LOC104807114 Tarenaya hassleriana HOM05D005090 ORTHO05D006142 8.5e-46 187.6 180 57.2
Cc10_g04780 Coffea canephora HOM05D005090 ORTHO05D006142 3.2e-45 185.7 173 56.1
Carub.0008s0737 Capsella rubella HOM05D005090 ORTHO05D006142 4.2e-45 185.3 177 58.2
Psat6g014640 Pisum sativum HOM05D005090 ORTHO05D006142 7.2e-45 184.5 174 58.6
Aa31LG3G14010 Aethionema arabicum HOM05D005090 ORTHO05D006142 9.4e-45 184.1 145 63.4
DCAR_019423 Daucus carota HOM05D005090 ORTHO05D006142 9.4e-45 184.1 174 57.5
Manes.05G176500 Manihot esculenta HOM05D005090 ORTHO05D006142 9.4e-45 184.1 122 77.0
CARHR184350 Cardamine hirsuta HOM05D005090 ORTHO05D006142 1.2e-44 183.7 180 56.1
EL10As7g23773 Beta vulgaris HOM05D005090 ORTHO05D006142 4.6e-44 181.8 149 65.1
HanXRQChr04g0103471 Helianthus annuus HOM05D005090 ORTHO05D006142 4.6e-44 181.8 176 56.2
BolC2t11671H Brassica oleracea HOM05D005090 ORTHO05D006142 7.9e-44 181.0 148 64.2
Hma1.2p1_0634F.1_g193080 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 1.0e-43 180.6 180 56.1
Thhalv10005720m.g Eutrema salsugineum HOM05D005090 ORTHO05D006142 2.3e-43 179.5 177 56.5
Lsat_1_v5_gn_1_22101 Lactuca sativa HOM05D005090 ORTHO05D006142 3.0e-43 179.1 185 54.1
Sp2g18330 Schrenkiella parvula HOM05D005090 ORTHO05D006142 3.9e-43 178.7 147 61.9
BcaC03g17615 Brassica carinata HOM05D005090 ORTHO05D006142 5.1e-43 178.3 147 61.9
Hma1.2p1_0360F.1_g135840 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 6.7e-43 177.9 186 57.0
PSO675G4571 Papaver somniferum HOM05D005090 ORTHO05D006142 8.8e-43 177.6 183 56.3
C07p38740 Brassica napus HOM05D005090 ORTHO05D006142 1.1e-42 177.2 178 54.5
BolC7t44393H Brassica oleracea HOM05D005090 ORTHO05D006142 1.1e-42 177.2 178 54.5
AUR62038807 Chenopodium quinoa HOM05D005090 ORTHO05D006142 1.1e-42 177.2 180 56.1
PSO541G4295 Papaver somniferum HOM05D005090 ORTHO05D006142 1.5e-42 176.8 183 56.3
C02p56140 Brassica napus HOM05D005090 ORTHO05D006142 2.5e-42 176.0 147 61.2
A06p39530 Brassica napus HOM05D005090 ORTHO05D006142 3.3e-42 175.6 178 53.9
AT5G47830 Arabidopsis thaliana HOM05D005090 ORTHO05D006142 4.3e-42 175.3 171 56.1
A02p37140 Brassica napus HOM05D005090 ORTHO05D006142 4.3e-42 175.3 176 54.0
BraA02t08700Z Brassica rapa HOM05D005090 ORTHO05D006142 4.3e-42 175.3 176 54.0
BraA06t26868Z Brassica rapa HOM05D005090 ORTHO05D006142 4.3e-42 175.3 178 53.9
AL8G19800 Arabidopsis lyrata HOM05D005090 ORTHO05D006142 1.3e-41 173.7 178 55.1
Hund05334 Selenicereus undatus HOM05D005090 ORTHO05D006142 2.2e-41 172.9 189 55.6
BcaB07g30052 Brassica carinata HOM05D005090 ORTHO05D006142 3.1e-40 169.1 167 55.7
Lj4C63T3 Lonicera japonica HOM05D005090 ORTHO05D006142 4.1e-40 168.7 122 71.3
ATR0762G034 Amborella trichopoda HOM05D005090 ORTHO05D006142 5.3e-40 168.3 153 55.6
ECA246G0692 Erigeron canadensis HOM05D005090 ORTHO05D006142 6.9e-40 167.9 173 52.0
unitig_26.g9810 Utricularia gibba HOM05D005090 ORTHO05D006142 9.1e-40 167.5 179 54.7
HanXRQChr05g0150671 Helianthus annuus HOM05D005090 ORTHO05D006142 1.2e-39 167.2 172 51.2
Oeu037620.1 Olea europaea HOM05D005090 ORTHO05D006142 1.0e-38 164.1 120 65.8
CDE06G1995 Ceratophyllum demersum HOM05D005090 ORTHO05D006142 1.1e-37 160.6 138 61.6
SEGI_34157 Sequoiadendron giganteum HOM05D005090 ORTHO05D006142 1.9e-37 159.8 169 50.9
ECA247G1795 Erigeron canadensis HOM05D005090 ORTHO05D006142 3.9e-35 152.1 135 57.8
Zm00001eb232600 Zea mays HOM05D005090 ORTHO05D006142 3.9e-35 152.1 138 58.7
Os02g0158600 Oryza sativa ssp. japonica HOM05D005090 ORTHO05D006142 6.7e-35 151.4 138 57.2
SGA_v2.0_scaffold197G41030 Striga asiatica HOM05D005090 ORTHO05D006142 8.8e-35 151.0 234 41.0
Migut.C00536 Erythranthe guttata HOM05D005090 ORTHO05D006142 3.3e-34 149.1 181 49.2
BcaB05g23208 Brassica carinata HOM05D005090 ORTHO05D006142 4.1e-32 142.1 124 58.1
CsaV3_4G034590 Cucumis sativus L. HOM05D005090 ORTHO05D006142 7.0e-32 141.4 181 48.1
BcaB04g18280 Brassica carinata HOM05D005090 ORTHO05D006142 2.0e-31 139.8 117 60.7
EL10As7g23770 Beta vulgaris HOM05D005090 ORTHO05D006142 7.7e-31 137.9 151 53.6
Nitab4.5_0012973g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 1.0e-30 137.5 120 56.7
vmacro04554 Vaccinium macrocarpon HOM05D005090 ORTHO05D006142 3.8e-30 135.6 250 35.6
TAR628G0694 Trochodendron aralioides HOM05D005090 ORTHO05D006142 2.5e-29 132.9 115 62.6
Pp3c10_3910 Physcomitrium patens HOM05D005090 ORTHO05D006142 1.6e-28 130.2 151 47.0
Pp3c14_4680 Physcomitrium patens HOM05D005090 ORTHO05D006142 1.8e-27 126.7 151 46.4
Pp3c14_4740 Physcomitrium patens HOM05D005090 ORTHO05D006142 1.8e-27 126.7 151 46.4
Mapoly0121s0046 Marchantia polymorpha HOM05D005090 ORTHO05D006142 3.0e-27 125.9 183 41.5
AagrBONN_evm.TU.Sc2ySwM_340.334 Anthoceros agrestis HOM05D005090 ORTHO05D006142 1.3e-25 120.6 153 43.8
SMO140G0004 Selaginella moellendorffii HOM05D002426 ORTHO05D002873 3.1e-24 115.9 177 40.1
Nitab4.5_0005621g0060 Nicotiana tabacum HOM05D005090 ORTHO05D006142 5.3e-24 115.2 100 56.0
EL10As7g23766 Beta vulgaris HOM05D005090 ORTHO05D006142 7.0e-24 114.8 128 53.9
EL10As7g23771 Beta vulgaris HOM05D005090 ORTHO05D006142 7.0e-24 114.8 128 53.9
MD06G1210300 Malus domestica HOM05D005090 ORTHO05D006142 1.3e-22 110.5 90 67.8
AUR62044449 Chenopodium quinoa HOM05D005090 ORTHO05D006142 1.9e-21 106.7 119 53.8
Sc02g0007470 Simmondsia chinensis HOM05D005090 ORTHO05D006142 5.5e-21 105.1 133 42.9
BcaB01g00393 Brassica carinata HOM05D005090 ORTHO05D006142 8.8e-19 97.8 103 51.5
CBR_g12766 Chara braunii HOM05D005090 ORTHO05D006142 1.1e-16 90.9 172 39.0
EL10As7g23765 Beta vulgaris HOM05D005090 ORTHO05D006142 1.3e-14 84.0 115 49.6
BcaC02g09103 Brassica carinata HOM05D005090 ORTHO05D006142 4.7e-12 75.5 95 50.5
C04p38460 Brassica napus HOM05D005090 ORTHO05D006142 1.0e-11 74.3 95 50.5
BolC6t37479H Brassica oleracea HOM05D005090 ORTHO05D006142 5.2e-11 72.0 95 49.5
BcaC03g17171 Brassica carinata HOM05D005090 ORTHO05D006142 8.8e-11 71.2 95 49.5
BolC2t11185H Brassica oleracea HOM05D005090 ORTHO05D006142 8.8e-11 71.2 95 49.5
C02p38970 Brassica napus HOM05D005090 ORTHO05D006142 4.4e-10 68.9 91 49.5
BolC2t09908H Brassica oleracea HOM05D005090 ORTHO05D006142 9.8e-10 67.8 115 46.1
Sabra02G0096900 Salix brachista HOM05D005090 ORTHO05D006142 2.2e-09 66.6 58 62.1
Sabra02G0096800 Salix brachista HOM05D005090 ORTHO05D006142 1.8e-08 63.5 48 66.7
CDE04G2695 Ceratophyllum demersum HOM05D005090 ORTHO05D006142 7.7e-07 58.2 49 59.2
BcaB04g18128 Brassica carinata HOM05D005090 ORTHO05D006142 8.6e-06 54.7 46 58.7


User provided reference genes

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