Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0307961 Rosa chinensis HOM05D004168 ORTHO05D004999 4.7e-140 501.1 242 100.0
FvH4_2g34410 Fragaria vesca HOM05D004168 ORTHO05D004999 6.3e-129 464.2 249 91.2
FAN24G2672 Fragaria x ananassa HOM05D004168 ORTHO05D004999 6.3e-129 464.2 249 91.2
FAN20G1800 Fragaria x ananassa HOM05D004168 ORTHO05D004999 5.9e-127 457.6 249 90.0
FAN15G2652 Fragaria x ananassa HOM05D004168 ORTHO05D004999 1.3e-126 456.4 250 89.2
MD08G1101200 Malus domestica HOM05D004168 ORTHO05D004999 6.0e-111 404.4 248 82.7
Prupe.1G435200 Prunus persica HOM05D004168 ORTHO05D004999 1.5e-109 399.8 247 80.6
COL.COLO4_26513 Corchorus olitorius HOM05D004168 ORTHO05D004999 4.3e-101 371.7 255 72.5
Thecc.08G006900 Theobroma cacao HOM05D004168 ORTHO05D004999 6.4e-97 357.8 258 70.2
Cpa.g.sc13.291 Carica papaya HOM05D004168 ORTHO05D004999 3.5e-95 352.1 221 77.4
MD15G1082400 Malus domestica HOM05D004168 ORTHO05D004999 4.6e-95 351.7 248 74.2
Manes.18G037500 Manihot esculenta HOM05D004168 ORTHO05D004999 1.0e-94 350.5 257 71.6
Eucgr.F00224 Eucalyptus grandis HOM05D004168 ORTHO05D004999 1.3e-94 350.1 254 72.4
Gohir.A05G202600 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.3e-94 350.1 255 68.6
Gohir.D05G205800 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.3e-94 350.1 255 68.2
ClCG05G019900 Citrullus lanatus HOM05D004168 ORTHO05D004999 2.3e-94 349.4 249 70.3
Potri.002G126000 Populus trichocarpa HOM05D004168 ORTHO05D004999 2.3e-94 349.4 249 70.3
CsaV3_4G034330 Cucumis sativus L. HOM05D004168 ORTHO05D004999 3.9e-94 348.6 256 68.4
Gorai.009G212100 Gossypium raimondii HOM05D004168 ORTHO05D004999 3.9e-94 348.6 255 69.0
Manes.05G174100 Manihot esculenta HOM05D004168 ORTHO05D004999 5.1e-94 348.2 251 71.7
Ciclev10002229m.g Citrus clementina HOM05D004168 ORTHO05D004999 2.5e-93 345.9 256 71.1
TWI36G1266 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 2.5e-93 345.9 255 68.6
TAR376G0672 Trochodendron aralioides HOM05D004168 ORTHO05D004999 9.6e-93 344.0 253 71.1
Sabra02G0098700 Salix brachista HOM05D004168 ORTHO05D004999 1.6e-92 343.2 249 67.9
GSVIVG01009491001 Vitis vinifera HOM05D004168 ORTHO05D004999 2.1e-92 342.8 246 69.5
Duzib116G0163 Durio zibethinus HOM05D004168 ORTHO05D004999 1.1e-91 340.5 255 68.6
arahy.Tifrunner.gnm1.ann1.TVNS6S Arachis hypogaea HOM05D004168 ORTHO05D004999 2.4e-91 339.3 246 71.5
TAR628G1263 Trochodendron aralioides HOM05D004168 ORTHO05D004999 2.4e-91 339.3 251 70.9
CANSAT25G0219 Cannabis sativa HOM05D004168 ORTHO05D004999 3.1e-91 339.0 249 67.5
QL12p001799 Quercus lobata HOM05D004168 ORTHO05D004999 4.0e-91 338.6 182 87.4
Lj1g0018004 Lotus japonicus HOM05D004168 ORTHO05D004999 1.5e-90 336.7 256 66.8
MBI15_g10497_MAGBIO Magnolia biondii HOM05D004168 ORTHO05D004999 3.4e-90 335.5 246 68.7
PGR083G0647 Punica granatum HOM05D004168 ORTHO05D004999 3.4e-90 335.5 259 68.3
Aqoxy1G00522 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 4.4e-90 335.1 251 67.3
Gorai.010G019900 Gossypium raimondii HOM05D004168 ORTHO05D004999 4.4e-90 335.1 255 66.7
Gohir.D06G017000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.9e-89 332.4 255 65.9
Sed0010101 Sechium edule HOM05D004168 ORTHO05D004999 2.9e-89 332.4 250 66.0
CiPaw.12G069100 Carya illinoinensis HOM05D004168 ORTHO05D004999 1.1e-88 330.5 220 74.1
Glyma.04G039100 Glycine max HOM05D004168 ORTHO05D004999 1.1e-88 330.5 255 67.1
arahy.Tifrunner.gnm1.ann1.IT5IHR Arachis hypogaea HOM05D004168 ORTHO05D004999 2.4e-88 329.3 251 68.9
VMungo1309G0269 Vigna mungo HOM05D004168 ORTHO05D004999 3.2e-88 328.9 249 66.7
arahy.Tifrunner.gnm1.ann1.85Q9C5 Arachis hypogaea HOM05D004168 ORTHO05D004999 9.3e-88 327.4 247 69.6
Sed0009126 Sechium edule HOM05D004168 ORTHO05D004999 9.3e-88 327.4 287 61.3
GSVIVG01024177001 Vitis vinifera HOM05D004168 ORTHO05D004999 2.1e-87 326.2 171 89.5
Medtr3g101750 Medicago truncatula HOM05D004168 ORTHO05D004999 2.7e-87 325.9 259 66.4
Glyma.06G040100 Glycine max HOM05D004168 ORTHO05D004999 1.3e-86 323.6 259 66.4
vmacro21519 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 1.7e-86 323.2 249 68.3
CiPaw.11G099200 Carya illinoinensis HOM05D004168 ORTHO05D004999 2.3e-86 322.8 226 70.8
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 3.0e-86 322.4 247 66.8
Ca_15947_v3 Cicer arietinum L. HOM05D004168 ORTHO05D004999 3.0e-86 322.4 255 64.7
PSO384G0569 Papaver somniferum HOM05D004168 ORTHO05D004999 3.9e-86 322.0 256 64.8
THA.LOC104812820 Tarenaya hassleriana HOM05D004168 ORTHO05D004999 3.9e-86 322.0 253 63.6
TPR.G24157 Trifolium pratense HOM05D004168 ORTHO05D004999 3.9e-86 322.0 259 64.9
TWI56G0083 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 5.1e-86 321.6 243 68.3
Rhsim06G0050100 Rhododendron simsii HOM05D004168 ORTHO05D004999 6.6e-86 321.2 254 66.5
CSS0013402 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 1.9e-85 319.7 244 67.6
Lj4A773T42 Lonicera japonica HOM05D004168 ORTHO05D004999 2.5e-85 319.3 257 63.4
Actinidia29872 Actinidia chinensis HOM05D004168 ORTHO05D004999 4.3e-85 318.5 247 66.0
AT4G17650 Arabidopsis thaliana HOM05D004168 ORTHO05D004999 4.3e-85 318.5 261 62.8
CSS0011562 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 4.3e-85 318.5 244 67.2
Dinv35958 Davidia involucrata HOM05D004168 ORTHO05D004999 5.6e-85 318.2 245 69.8
Psat5g043040 Pisum sativum HOM05D004168 ORTHO05D004999 7.3e-85 317.8 255 64.7
AL7G36940 Arabidopsis lyrata HOM05D004168 ORTHO05D004999 2.8e-84 315.8 259 62.2
Cc10_g04130 Coffea canephora HOM05D004168 ORTHO05D004999 2.8e-84 315.8 178 82.6
Lalb_Chr23g0267171 Lupinus albus HOM05D004168 ORTHO05D004999 3.6e-84 315.5 259 63.3
Carub.0007s2373 Capsella rubella HOM05D004168 ORTHO05D004999 8.1e-84 314.3 256 63.3
CARHR224370 Cardamine hirsuta HOM05D004168 ORTHO05D004999 3.1e-83 312.4 254 63.8
MSTRG.1350 Avicennia marina HOM05D004168 ORTHO05D004999 9.0e-83 310.8 253 63.2
Aa31LG6G400 Aethionema arabicum HOM05D004168 ORTHO05D004999 1.5e-82 310.1 257 62.3
Sc02g0007150 Simmondsia chinensis HOM05D004168 ORTHO05D004999 1.5e-82 310.1 245 65.7
PGSC0003DMG401007971 Solanum tuberosum HOM05D004168 ORTHO05D004999 1.5e-82 310.1 258 61.6
Solyc04g078890.4 Solanum lycopersicum HOM05D004168 ORTHO05D004999 4.4e-82 308.5 258 61.6
Sp7g16490 Schrenkiella parvula HOM05D004168 ORTHO05D004999 5.8e-82 308.1 259 61.0
PGR031G2881 Punica granatum HOM05D004168 ORTHO05D004999 7.6e-82 307.8 261 62.5
Sopen04g032490 Solanum pennellii HOM05D004168 ORTHO05D004999 7.6e-82 307.8 258 61.2
Rhsim07G0228300 Rhododendron simsii HOM05D004168 ORTHO05D004999 9.9e-82 307.4 253 62.5
Nitab4.5_0002760g0060 Nicotiana tabacum HOM05D004168 ORTHO05D004999 1.7e-81 306.6 259 60.6
BcaC09g51623 Brassica carinata HOM05D004168 ORTHO05D004999 2.9e-81 305.8 255 62.0
BcaNung06715 Brassica carinata HOM05D004168 ORTHO05D004999 3.8e-81 305.4 253 61.3
Oeu043572.2 Olea europaea HOM05D004168 ORTHO05D004999 6.4e-81 304.7 225 66.7
BcaB04g18436 Brassica carinata HOM05D004168 ORTHO05D004999 8.4e-81 304.3 251 60.2
Thhalv10026045m.g Eutrema salsugineum HOM05D004168 ORTHO05D004999 8.4e-81 304.3 259 61.0
Nitab4.5_0000287g0250 Nicotiana tabacum HOM05D004168 ORTHO05D004999 1.1e-80 303.9 178 78.7
FAN27G1360 Fragaria x ananassa HOM05D004168 ORTHO05D004999 1.4e-80 303.5 147 97.3
BraA08t33308Z Brassica rapa HOM05D004168 ORTHO05D004999 1.9e-80 303.1 217 65.0
C01p11320 Brassica napus HOM05D004168 ORTHO05D004999 2.4e-80 302.8 253 61.7
BolC1t01097H Brassica oleracea HOM05D001479 ORTHO05D001401 5.4e-80 301.6 211 67.8
unitig_19.g30012 Utricularia gibba HOM05D004168 ORTHO05D004999 7.1e-80 301.2 239 64.4
unitig_8.g5020 Utricularia gibba HOM05D004168 ORTHO05D004999 7.1e-80 301.2 239 64.4
BraA01t00914Z Brassica rapa HOM05D004168 ORTHO05D004999 2.1e-79 299.7 252 61.9
Os01g0772400 Oryza sativa ssp. japonica HOM05D004168 ORTHO05D004999 7.9e-79 297.7 175 78.3
Migut.C00576 Erythranthe guttata HOM05D004168 ORTHO05D004999 1.0e-78 297.4 175 76.6
EL10Ac9g21781 Beta vulgaris HOM05D004168 ORTHO05D004999 1.3e-78 297.0 245 62.9
CAN.G1030.1 Capsicum annuum HOM05D004168 ORTHO05D004999 1.3e-78 297.0 249 60.6
ECA247G0458 Erigeron canadensis HOM05D004168 ORTHO05D004999 2.3e-78 296.2 179 77.7
Peaxi162Scf00252g00056 Petunia axillaris HOM05D004168 ORTHO05D004999 2.3e-78 296.2 262 59.5
Hund06209 Selenicereus undatus HOM05D004168 ORTHO05D004999 3.9e-78 295.4 253 60.1
BcaNung00072 Brassica carinata HOM05D004168 ORTHO05D004999 5.1e-78 295.0 244 62.3
A01p09710 Brassica napus HOM05D004168 ORTHO05D004999 5.1e-78 295.0 246 62.6
SGA_v2.0_scaffold14G07004 Striga asiatica HOM05D004168 ORTHO05D004999 5.1e-78 295.0 178 74.7
DCAR_012778 Daucus carota HOM05D004168 ORTHO05D004999 8.7e-78 294.3 253 60.9
A08p13270 Brassica napus HOM05D004168 ORTHO05D004999 1.9e-77 293.1 182 73.1
Lsat_1_v5_gn_1_21041 Lactuca sativa HOM05D004168 ORTHO05D004999 2.5e-77 292.7 244 61.5
Hund00296 Selenicereus undatus HOM05D004168 ORTHO05D004999 4.3e-77 292.0 246 63.0
Hund00303 Selenicereus undatus HOM05D004168 ORTHO05D004999 4.3e-77 292.0 246 63.0
EL10As14g24078 Beta vulgaris HOM05D004168 ORTHO05D004999 7.3e-77 291.2 245 61.6
AUR62016672 Chenopodium quinoa HOM05D004168 ORTHO05D004999 7.3e-77 291.2 252 60.7
HPP92_018641 Vanilla planifolia HOM05D004168 ORTHO05D004999 7.3e-77 291.2 179 75.4
AUR62011389 Chenopodium quinoa HOM05D004168 ORTHO05D004999 2.1e-76 289.7 252 59.5
DCAR_019452 Daucus carota HOM05D004168 ORTHO05D004999 4.8e-76 288.5 249 59.4
CDE06G0679 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 1.8e-75 286.6 175 74.9
Haze_17522 Corylus avellana HOM05D004168 ORTHO05D004999 4.0e-75 285.4 211 69.2
Gohir.A06G018666 Gossypium hirsutum HOM05D004168 ORTHO05D004999 9.0e-75 284.3 255 58.8
HanXRQChr02g0039451 Helianthus annuus HOM05D004168 ORTHO05D004999 9.0e-75 284.3 169 76.3
Aqoxy2G00574 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 2.0e-74 283.1 168 76.8
Cfa018557 Carpinus fangiana HOM05D004168 ORTHO05D004999 3.4e-74 282.3 211 69.7
DCAR_008795 Daucus carota HOM05D004168 ORTHO05D004999 2.2e-73 279.6 225 59.6
MELO3C016753.2 Cucumis melo HOM05D004168 ORTHO05D004999 4.9e-73 278.5 215 65.6
Lsat_1_v5_gn_4_125661 Lactuca sativa HOM05D004168 ORTHO05D004999 1.1e-72 277.3 236 60.2
Ah.01g019770 Amaranthus hybridus HOM05D004168 ORTHO05D004999 3.2e-72 275.8 201 66.7
HanXRQChr09g0267591 Helianthus annuus HOM05D004168 ORTHO05D004999 7.1e-72 274.6 210 65.2
CANSAT11G0235 Cannabis sativa HOM05D004168 ORTHO05D004999 7.9e-71 271.2 241 58.5
Cfa012532 Carpinus fangiana HOM05D004168 ORTHO05D002421 1.8e-70 270.0 233 63.5
MSTRG.22261 Avicennia marina HOM05D004168 ORTHO05D004999 2.3e-70 269.6 238 57.6
ECA232G1782 Erigeron canadensis HOM05D004168 ORTHO05D004999 3.9e-70 268.9 219 60.7
Nn2g14539 Nelumbo nucifera HOM05D004168 ORTHO05D004999 9.6e-69 264.2 164 78.7
Phvul.009G065300 Phaseolus vulgaris HOM05D004168 ORTHO05D004999 6.2e-68 261.5 209 64.1
BcaC07g38091 Brassica carinata HOM05D004168 ORTHO05D004999 1.2e-66 257.3 179 67.6
Eucgr.F02339 Eucalyptus grandis HOM05D004168 ORTHO05D004999 3.5e-63 245.7 245 55.9
Duzib093G1913 Durio zibethinus HOM05D004168 ORTHO05D004999 3.0e-62 242.7 255 54.5
Zm00001eb370050 Zea mays HOM05D004168 ORTHO05D004999 3.9e-62 242.3 137 81.0
SalBow7G4699 Salvia bowleyana HOM05D004168 ORTHO05D004999 5.1e-62 241.9 213 58.2
Mapoly0004s0036 Marchantia polymorpha HOM05D004168 ORTHO05D004999 3.1e-59 232.6 196 57.1
Eucgr.F02343 Eucalyptus grandis HOM05D004168 ORTHO05D004999 9.0e-59 231.1 152 73.7
Eucgr.L02367 Eucalyptus grandis HOM05D004168 ORTHO05D004999 1.3e-57 227.3 258 51.2
SMO340G0178 Selaginella moellendorffii HOM05D004168 ORTHO05D004999 8.4e-57 224.6 164 63.4
Pp3c21_16730 Physcomitrium patens HOM05D004168 ORTHO05D004999 7.2e-56 221.5 170 58.8
CBR_g66636 Chara braunii HOM05D004168 ORTHO05D004999 3.5e-55 219.2 236 47.9
PSO339G0184 Papaver somniferum HOM05D004168 ORTHO05D004999 3.0e-54 216.1 256 50.0
SEGI_05154 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 5.1e-54 215.3 149 65.1
AagrBONN_evm.TU.Sc2ySwM_228.4844 Anthoceros agrestis HOM05D004168 ORTHO05D004999 6.7e-54 214.9 171 60.2
Lalb_Chr11g0062631 Lupinus albus HOM05D004168 ORTHO05D004999 5.7e-53 211.8 111 88.3
Pp3c22_1290 Physcomitrium patens HOM05D004168 ORTHO05D004999 5.7e-53 211.8 167 56.9
vmacro04448 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 1.1e-51 207.6 250 48.4
arahy.Tifrunner.gnm1.ann1.F8YVUF Arachis hypogaea HOM05D004168 ORTHO05D004999 2.7e-39 166.4 143 60.8
Zm00001eb151870 Zea mays HOM05D004168 ORTHO05D004999 3.1e-35 152.9 90 76.7
arahy.Tifrunner.gnm1.ann1.ZKL3GY Arachis hypogaea HOM05D004168 ORTHO05D004999 7.0e-35 151.8 84 85.7
arahy.Tifrunner.gnm1.ann1.RZ37P0 Arachis hypogaea HOM05D004168 ORTHO05D004999 1.2e-34 151.0 215 43.7
SEGI_12997 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 2.3e-30 136.7 94 66.0
SEGI_03271 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 4.8e-28 129.0 82 65.9
AUR62007226 Chenopodium quinoa HOM05D004168 ORTHO05D004999 6.3e-28 128.6 127 55.9
Cre07.g345700 Chlamydomonas reinhardtii HOM05D004168 ORTHO05D004999 3.5e-26 122.9 211 31.8
arahy.Tifrunner.gnm1.ann1.H0AX16 Arachis hypogaea HOM05D004168 ORTHO05D004999 1.3e-25 120.9 73 78.1
Atru.chr13.696 Acer truncatum HOM05D004168 ORTHO05D004999 8.5e-25 118.2 63 87.3
MCO12G423 Micromonas commoda HOM05D004168 ORTHO05D004999 2.6e-21 106.7 142 40.8
Oeu049977.1 Olea europaea HOM05D004168 ORTHO05D004999 4.4e-21 105.9 78 66.7
Sc15g0006120 Simmondsia chinensis HOM05D004168 ORTHO05D003195 4.4e-21 105.9 65 73.8
arahy.Tifrunner.gnm1.ann1.TNR0C9 Arachis hypogaea HOM05D004168 ORTHO05D004999 7.5e-21 105.1 67 70.1
arahy.Tifrunner.gnm1.ann1.CBC9PR Arachis hypogaea HOM05D004168 ORTHO05D004999 8.5e-17 91.7 86 52.3
Lj6g0018320 Lotus japonicus HOM05D004168 ORTHO05D004999 2.1e-15 87.0 48 79.2
Gohir.A06G060332 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.2e-13 81.3 46 76.1
Gohir.D01G114560 Gossypium hirsutum HOM05D004168 ORTHO05D004999 8.3e-12 75.1 46 71.7
Gorai.002G139800 Gossypium raimondii HOM05D004168 ORTHO05D004999 8.3e-12 75.1 46 71.7
COL.COLO4_26873 Corchorus olitorius HOM05D004168 ORTHO05D004999 1.1e-11 74.7 39 82.1
Dinv39314 Davidia involucrata HOM05D003792 ORTHO05D003195 1.3e-09 67.8 99 45.5
CDE07G0992 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 6.6e-09 65.5 69 49.3
Gohir.D06G118000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.9e-08 63.9 43 67.4
MBI15_g33084_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D002129 3.3e-08 63.2 35 74.3


User provided reference genes

Program Settings