Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0307621 Rosa chinensis HOM05D000955 ORTHO05D003340 1.7e-37 159.1 96 100.0
RcHm_v2.0_Chr6g0307791 Rosa chinensis HOM05D000955 ORTHO05D003340 1.7e-37 159.1 96 100.0
FAN20G1846 Fragaria x ananassa HOM05D000955 ORTHO05D003340 6.1e-35 150.6 96 95.8
FvH4_2g34550 Fragaria vesca HOM05D000955 ORTHO05D003340 2.2e-32 142.1 96 90.6
FAN15G0770 Fragaria x ananassa HOM05D000955 ORTHO05D003340 2.9e-32 141.7 96 89.6
RcHm_v2.0_Chr5g0048521 Rosa chinensis HOM05D000955 ORTHO05D003340 4.1e-31 137.9 96 81.2
Prupe.1G437300 Prunus persica HOM05D000955 ORTHO05D003340 5.4e-31 137.5 96 74.0
FAN27G2801 Fragaria x ananassa HOM05D000955 ORTHO05D003340 4.6e-30 134.4 96 87.5
RcHm_v2.0_Chr5g0048531 Rosa chinensis HOM05D000955 ORTHO05D003340 1.7e-29 132.5 96 85.4
Gohir.A06G017800 Gossypium hirsutum HOM05D000955 ORTHO05D003340 1.5e-20 102.8 97 54.6
COL.COLO4_26487 Corchorus olitorius HOM05D000955 ORTHO05D003340 2.5e-20 102.1 83 61.4
Potri.014G030900 Populus trichocarpa HOM05D000955 ORTHO05D003340 4.3e-20 101.3 96 55.2
Peaxi162Scf00064g00006 Petunia axillaris HOM05D000955 ORTHO05D003340 3.6e-19 98.2 91 57.1
CAN.G1518.2 Capsicum annuum HOM05D000955 ORTHO05D003340 1.1e-18 96.7 86 55.8
Gorai.005G102900 Gossypium raimondii HOM05D000955 ORTHO05D003340 1.4e-18 96.3 96 52.1
Peaxi162Scf00064g00025 Petunia axillaris HOM05D000955 ORTHO05D003340 1.4e-18 96.3 96 52.1
Nitab4.5_0007986g0020 Nicotiana tabacum HOM05D000955 ORTHO05D003340 2.3e-18 95.5 96 52.1
Thecc.08G010100 Theobroma cacao HOM05D000955 ORTHO05D003340 3.1e-18 95.1 96 51.0
CSS0029458 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D003340 5.2e-18 94.4 92 55.4
Lj4C54T13 Lonicera japonica HOM05D000955 ORTHO05D003340 5.2e-18 94.4 101 51.5
Potri.014G030800 Populus trichocarpa HOM05D000955 ORTHO05D003340 6.8e-18 94.0 93 51.6
COL.COLO4_26486 Corchorus olitorius HOM05D000955 ORTHO05D003340 8.9e-18 93.6 96 51.0
Gorai.010G018500 Gossypium raimondii HOM05D000955 ORTHO05D003340 8.9e-18 93.6 97 52.6
CAN.G371.28 Capsicum annuum HOM05D000955 ORTHO05D003340 1.2e-17 93.2 96 52.1
Gohir.D06G015900 Gossypium hirsutum HOM05D000955 ORTHO05D003340 1.2e-17 93.2 97 52.6
Nitab4.5_0000686g0110 Nicotiana tabacum HOM05D000955 ORTHO05D003340 1.2e-17 93.2 94 48.9
HanXRQChr09g0267871 Helianthus annuus HOM05D000955 ORTHO05D003340 1.5e-17 92.8 89 49.4
Aqoxy5G01248 Aquilegia oxysepala HOM05D000955 ORTHO05D003340 2.6e-17 92.0 80 60.0
Aqoxy6G01348 Aquilegia oxysepala HOM05D000955 ORTHO05D003340 2.6e-17 92.0 97 49.5
Gohir.D06G015700 Gossypium hirsutum HOM05D000955 ORTHO05D003340 3.4e-17 91.7 97 51.5
COL.COLO4_26485 Corchorus olitorius HOM05D000955 ORTHO05D003340 4.4e-17 91.3 96 50.0
Manes.18G035800 Manihot esculenta HOM05D000955 ORTHO05D003340 4.4e-17 91.3 91 51.6
Sabra14G0021800 Salix brachista HOM05D000955 ORTHO05D003340 4.4e-17 91.3 93 49.5
DCAR_008793 Daucus carota HOM05D000955 ORTHO05D003340 5.8e-17 90.9 91 53.8
Gorai.010G018700 Gossypium raimondii HOM05D000955 ORTHO05D003340 5.8e-17 90.9 97 51.5
Gohir.A06G017600 Gossypium hirsutum HOM05D000955 ORTHO05D003340 9.9e-17 90.1 97 51.5
Cpa.g.sc49.7 Carica papaya HOM05D000955 ORTHO05D003340 1.3e-16 89.7 94 61.7
ECA232G3034 Erigeron canadensis HOM05D000955 ORTHO05D003340 1.3e-16 89.7 89 46.1
Nitab4.5_0001580g0040 Nicotiana tabacum HOM05D000955 ORTHO05D003340 1.3e-16 89.7 99 47.5
vmacro21529 Vaccinium macrocarpon HOM05D000955 ORTHO05D003340 1.3e-16 89.7 89 49.4
Solyc04g079080.2 Solanum lycopersicum HOM05D000955 ORTHO05D003340 1.7e-16 89.4 94 48.9
Solyc12g088860.2 Solanum lycopersicum HOM05D000955 ORTHO05D003340 1.7e-16 89.4 97 51.5
Dinv39322 Davidia involucrata HOM05D000955 ORTHO05D003340 2.2e-16 89.0 93 65.6
Potri.014G030500 Populus trichocarpa HOM05D000955 ORTHO05D003340 2.2e-16 89.0 93 48.4
Sopen12g030750 Solanum pennellii HOM05D000955 ORTHO05D003340 2.2e-16 89.0 100 51.0
DCAR_008792 Daucus carota HOM05D000955 ORTHO05D003340 3.7e-16 88.2 91 51.6
Migut.C00586 Erythranthe guttata HOM05D000955 ORTHO05D003340 3.7e-16 88.2 84 52.4
Sopen04g032690 Solanum pennellii HOM05D000955 ORTHO05D003340 3.7e-16 88.2 94 47.9
CAN.G1422.10 Capsicum annuum HOM05D000955 ORTHO05D003340 4.9e-16 87.8 101 48.5
Peaxi162Scf00064g00002 Petunia axillaris HOM05D000955 ORTHO05D003340 6.4e-16 87.4 86 54.7
Sabra14G0021900 Salix brachista HOM05D000955 ORTHO05D003340 6.4e-16 87.4 86 53.5
Sabra14G0021600 Salix brachista HOM05D000955 ORTHO05D003340 8.3e-16 87.0 86 53.5
Solyc12g088850.1 Solanum lycopersicum HOM05D000955 ORTHO05D003340 1.4e-15 86.3 97 48.5
Sopen12g030740 Solanum pennellii HOM05D000955 ORTHO05D003340 1.9e-15 85.9 97 48.5
DCAR_008791 Daucus carota HOM05D000955 ORTHO05D003340 4.1e-15 84.7 92 48.9
Nitab4.5_0006312g0020 Nicotiana tabacum HOM05D000955 ORTHO05D003340 4.1e-15 84.7 96 46.9
Migut.C00587 Erythranthe guttata HOM05D000955 ORTHO05D003340 5.4e-15 84.3 95 48.4
Medtr1g019720 Medicago truncatula HOM05D000955 ORTHO05D003340 9.2e-15 83.6 93 48.4
Gohir.A06G017700 Gossypium hirsutum HOM05D000955 ORTHO05D003340 1.6e-14 82.8 98 50.0
MBI06_g36647_MAGBIO Magnolia biondii HOM05D000955 ORTHO05D003340 1.6e-14 82.8 96 47.9
HPP92_004112 Vanilla planifolia HOM05D000955 ORTHO05D003340 1.6e-14 82.8 92 48.9
Ca_13297_v3 Cicer arietinum L. HOM05D000955 ORTHO05D003340 2.1e-14 82.4 93 49.5
Gohir.A06G018100 Gossypium hirsutum HOM05D000955 ORTHO05D003340 2.1e-14 82.4 98 49.0
Gohir.D06G016000 Gossypium hirsutum HOM05D000955 ORTHO05D003340 2.1e-14 82.4 98 49.0
Gorai.010G018800 Gossypium raimondii HOM05D000955 ORTHO05D003340 2.1e-14 82.4 98 49.0
Nn5g30250 Nelumbo nucifera HOM05D000955 ORTHO05D003340 2.7e-14 82.0 97 47.4
Zm00001eb100840 Zea mays HOM05D000955 ORTHO05D003340 2.7e-14 82.0 99 43.4
Potri.002G127000 Populus trichocarpa HOM05D000955 ORTHO05D003340 3.5e-14 81.6 93 46.2
CAN.G1518.1 Capsicum annuum HOM05D000955 ORTHO05D003340 4.6e-14 81.3 98 46.9
Nn1g04889 Nelumbo nucifera HOM05D000955 ORTHO05D003340 4.6e-14 81.3 94 45.7
Psat6g013520 Pisum sativum HOM05D000955 ORTHO05D003340 4.6e-14 81.3 93 47.3
Hma1.2p1_0718F.1_g208350 Hydrangea macrophylla HOM05D000955 ORTHO05D003340 7.8e-14 80.5 91 49.5
Medtr1g019715 Medicago truncatula HOM05D000955 ORTHO05D003340 1.0e-13 80.1 93 46.2
Os09g0458900 Oryza sativa ssp. japonica HOM05D000955 ORTHO05D003340 1.0e-13 80.1 99 42.4
Psat6g013560 Pisum sativum HOM05D000955 ORTHO05D003340 1.0e-13 80.1 93 46.2
arahy.Tifrunner.gnm1.ann1.LA24B5 Arachis hypogaea HOM05D000955 ORTHO05D003340 1.3e-13 79.7 87 51.7
Gohir.D06G015800 Gossypium hirsutum HOM05D000955 ORTHO05D003340 1.3e-13 79.7 98 48.0
TPR.G10919 Trifolium pratense HOM05D000955 ORTHO05D003340 1.3e-13 79.7 93 45.2
TPR.G17533 Trifolium pratense HOM05D000955 ORTHO05D003340 1.3e-13 79.7 93 47.3
Gorai.010G018600 Gossypium raimondii HOM05D000955 ORTHO05D003340 1.7e-13 79.3 98 48.0
TPR.G17546 Trifolium pratense HOM05D000955 ORTHO05D003340 1.7e-13 79.3 93 45.2
Psat6g013600 Pisum sativum HOM05D000955 ORTHO05D003340 2.3e-13 79.0 93 45.2
Glyma.06G039300 Glycine max HOM05D000955 ORTHO05D003340 3.0e-13 78.6 93 49.5
Gohir.D06G016100 Gossypium hirsutum HOM05D000955 ORTHO05D003340 3.0e-13 78.6 98 49.0
Psat6g013720 Pisum sativum HOM05D000955 ORTHO05D003340 3.0e-13 78.6 94 45.7
Migut.H00440 Erythranthe guttata HOM05D000955 ORTHO05D003340 3.9e-13 78.2 90 43.3
Glyma.04G038300 Glycine max HOM05D000955 ORTHO05D003340 3.9e-13 78.2 93 47.3
Rhsim07G0228900 Rhododendron simsii HOM05D000955 ORTHO05D003340 3.9e-13 78.2 81 46.9
Sabra02G0099500 Salix brachista HOM05D000955 ORTHO05D003340 3.9e-13 78.2 88 50.0
Aqoxy5G01246 Aquilegia oxysepala HOM05D000955 ORTHO05D003340 5.1e-13 77.8 81 49.4
PGSC0003DMG400007985 Solanum tuberosum HOM05D000955 ORTHO05D003340 5.1e-13 77.8 81 48.1
Glyma.17G242800 Glycine max HOM05D000955 ORTHO05D003340 8.6e-13 77.0 93 46.2
Phvul.009G064500 Phaseolus vulgaris HOM05D000955 ORTHO05D003340 8.6e-13 77.0 93 46.2
Cc10_g04230 Coffea canephora HOM05D000955 ORTHO05D003340 1.1e-12 76.6 78 50.0
Glyma.06G039400 Glycine max HOM05D000955 ORTHO05D003340 1.1e-12 76.6 93 46.2
MBI02_g02963_MAGBIO Magnolia biondii HOM05D000955 ORTHO05D003340 1.5e-12 76.3 97 47.4
Aqoxy5G01247 Aquilegia oxysepala HOM05D000955 ORTHO05D003340 1.9e-12 75.9 80 48.8
Lsat_1_v5_gn_4_125520 Lactuca sativa HOM05D000955 ORTHO05D003340 1.9e-12 75.9 78 44.9
Psat6g013640 Pisum sativum HOM05D000955 ORTHO05D003340 1.9e-12 75.9 93 45.2
Gohir.D02G091750 Gossypium hirsutum HOM05D000955 ORTHO05D003340 2.5e-12 75.5 63 60.3
Os07g0619200 Oryza sativa ssp. japonica HOM05D000955 ORTHO05D003340 2.5e-12 75.5 79 48.1
Rhsim07G0229500 Rhododendron simsii HOM05D000955 ORTHO05D003340 2.5e-12 75.5 80 46.2
Rhsim07G0229000 Rhododendron simsii HOM05D000955 ORTHO05D003340 5.6e-12 74.3 91 39.6
ECA246G3551 Erigeron canadensis HOM05D000955 ORTHO05D003340 7.3e-12 73.9 78 48.7
vmacro04455 Vaccinium macrocarpon HOM05D000955 ORTHO05D003340 9.6e-12 73.6 84 44.0
HanXRQChr02g0039431 Helianthus annuus HOM05D000955 ORTHO05D003340 1.2e-11 73.2 87 46.0
Oeu004829.1 Olea europaea HOM05D000955 ORTHO05D003340 1.2e-11 73.2 79 49.4
CDE06G0816 Ceratophyllum demersum HOM05D000955 ORTHO05D003340 2.1e-11 72.4 93 52.7
Peaxi162Scf01890g00029 Petunia axillaris HOM05D000955 ORTHO05D003340 2.1e-11 72.4 90 47.8
Duzib116G0076 Durio zibethinus HOM05D000955 ORTHO05D003340 3.6e-11 71.6 81 48.1
Migut.K00765 Erythranthe guttata HOM05D000955 ORTHO05D003340 3.6e-11 71.6 88 42.0
Eucgr.F00233 Eucalyptus grandis HOM05D000955 ORTHO05D003340 3.6e-11 71.6 83 48.2
CDE10G0233 Ceratophyllum demersum HOM05D000955 ORTHO05D003340 4.7e-11 71.2 78 44.9
Zm00001eb109460 Zea mays HOM05D000955 ORTHO05D003340 4.7e-11 71.2 95 46.3
Eucgr.F00234 Eucalyptus grandis HOM05D000955 ORTHO05D003340 8.1e-11 70.5 84 45.2
Rhsim07G0229100 Rhododendron simsii HOM05D000955 ORTHO05D003340 1.1e-10 70.1 80 43.8
MSTRG.3423 Avicennia marina HOM05D000955 ORTHO05D003340 2.4e-10 68.9 88 39.8
Peaxi162Scf01073g00017 Petunia axillaris HOM05D000955 ORTHO05D003340 2.4e-10 68.9 71 52.1
unitig_32.g10766 Utricularia gibba HOM05D000939 ORTHO05D000745 3.1e-10 68.6 77 45.5
SalBow5G1664 Salvia bowleyana HOM05D000955 ORTHO05D003340 5.2e-10 67.8 92 41.3
SalBow5G5547 Salvia bowleyana HOM05D000955 ORTHO05D003340 5.2e-10 67.8 92 41.3
HPP92_004230 Vanilla planifolia HOM05D000955 ORTHO05D003340 5.2e-10 67.8 94 45.7
Potri.014G030700 Populus trichocarpa HOM05D000955 ORTHO05D003340 8.9e-10 67.0 80 47.5
Medtr3g101610 Medicago truncatula HOM05D000955 ORTHO05D003340 1.2e-09 66.6 84 45.2
CDE10G0229 Ceratophyllum demersum HOM05D000955 ORTHO05D003340 1.5e-09 66.2 92 40.2
HanXRQChr05g0137741 Helianthus annuus HOM05D000955 ORTHO05D003340 1.5e-09 66.2 80 47.5
Gorai.010G019000 Gossypium raimondii HOM05D000955 ORTHO05D003340 2.0e-09 65.9 49 67.3
Manes.18G035900 Manihot esculenta HOM05D000955 ORTHO05D003340 2.0e-09 65.9 83 44.6
Psat5g043640 Pisum sativum HOM05D000955 ORTHO05D003340 2.0e-09 65.9 88 44.3
Rhsim07G0229400 Rhododendron simsii HOM05D000955 ORTHO05D003340 2.0e-09 65.9 80 40.0
CDE08G0020 Ceratophyllum demersum HOM05D000955 ORTHO05D003340 2.6e-09 65.5 88 44.3
Nn5g30251 Nelumbo nucifera HOM05D000955 ORTHO05D003340 3.4e-09 65.1 80 45.0
Os03g0395200 Oryza sativa ssp. japonica HOM05D000955 ORTHO05D003340 3.4e-09 65.1 78 50.0
Gohir.D06G016150 Gossypium hirsutum HOM05D000955 ORTHO05D003340 5.8e-09 64.3 49 65.3
unitig_748.g8402 Utricularia gibba HOM05D000955 ORTHO05D003340 5.8e-09 64.3 77 44.2
Oeu043559.1 Olea europaea HOM05D000955 ORTHO05D003340 7.6e-09 63.9 82 40.2
Rhsim06G0048800 Rhododendron simsii HOM05D000955 ORTHO05D003340 7.6e-09 63.9 89 41.6
Os09g0458800 Oryza sativa ssp. japonica HOM05D000955 ORTHO05D003340 9.9e-09 63.5 78 39.7
Cpa.g.sc55.161 Carica papaya HOM05D000955 ORTHO05D003340 1.3e-08 63.2 88 38.6
Manes.12G102501 Manihot esculenta HOM05D000955 ORTHO05D003340 1.3e-08 63.2 87 39.1
Nitab4.5_0000453g0120 Nicotiana tabacum HOM05D000955 ORTHO05D003340 1.3e-08 63.2 78 46.2
Dinv39861 Davidia involucrata HOM05D000955 ORTHO05D003340 1.7e-08 62.8 78 39.7
ECA246G2186 Erigeron canadensis HOM05D000955 ORTHO05D003340 1.7e-08 62.8 88 37.5
TPR.G28116 Trifolium pratense HOM05D000955 ORTHO05D003340 1.7e-08 62.8 82 43.9
Gohir.A12G070700 Gossypium hirsutum HOM05D000955 ORTHO05D003340 2.2e-08 62.4 88 36.4
Gohir.D12G068600 Gossypium hirsutum HOM05D000955 ORTHO05D003340 2.2e-08 62.4 88 36.4
Gorai.008G075000 Gossypium raimondii HOM05D000955 ORTHO05D003340 2.2e-08 62.4 88 36.4
SalBow7G0951 Salvia bowleyana HOM05D000955 ORTHO05D003340 2.2e-08 62.4 78 44.9
MBI02_g02964_MAGBIO Magnolia biondii HOM05D000955 ORTHO05D003340 2.9e-08 62.0 80 37.5
Aqoxy5G01245 Aquilegia oxysepala HOM05D000955 ORTHO05D003340 3.8e-08 61.6 94 36.2
Rhsim07G0229300 Rhododendron simsii HOM05D000955 ORTHO05D003340 3.8e-08 61.6 54 51.9
Zm00001eb279150 Zea mays HOM05D000955 ORTHO05D003340 3.8e-08 61.6 79 44.3
HanXRQChr12g0378981 Helianthus annuus HOM05D000955 ORTHO05D003340 6.4e-08 60.8 88 35.2
Medtr3g101600 Medicago truncatula HOM05D000955 ORTHO05D003340 6.4e-08 60.8 82 43.9
DCAR_010900 Daucus carota HOM05D000955 ORTHO05D003340 8.4e-08 60.5 89 34.8
Sabra14G0021700 Salix brachista HOM05D000955 ORTHO05D003340 8.4e-08 60.5 83 39.8
HanXRQChr12g0378991 Helianthus annuus HOM05D000955 ORTHO05D003340 1.1e-07 60.1 88 35.2
Lsat_1_v5_gn_3_90960 Lactuca sativa HOM05D000955 ORTHO05D003340 1.4e-07 59.7 88 35.2
Manes.18G036000 Manihot esculenta HOM05D000955 ORTHO05D003340 1.4e-07 59.7 79 41.8
HanXRQChr15g0473701 Helianthus annuus HOM05D000955 ORTHO05D003340 2.4e-07 58.9 88 34.1
Lj4C144G12 Lonicera japonica HOM05D002458 ORTHO05D002603 2.4e-07 58.9 87 34.5
Cfa004009 Carpinus fangiana HOM05D000955 ORTHO05D003340 4.2e-07 58.2 87 36.8
COL.COLO4_11400 Corchorus olitorius HOM05D000955 ORTHO05D003340 4.2e-07 58.2 93 37.6
Manes.13G127500 Manihot esculenta HOM05D000955 ORTHO05D003340 4.2e-07 58.2 87 36.8
Thecc.01G054500 Theobroma cacao HOM05D000955 ORTHO05D003340 4.2e-07 58.2 93 34.4
Atru.chr13.675 Acer truncatum HOM05D000955 ORTHO05D001429 5.4e-07 57.8 72 41.7
MSTRG.1342 Avicennia marina HOM05D000955 ORTHO05D003340 5.4e-07 57.8 81 38.3
Migut.H00439 Erythranthe guttata HOM05D000955 ORTHO05D003340 7.1e-07 57.4 83 41.0
SalBow7G3079 Salvia bowleyana HOM05D000955 ORTHO05D003340 7.1e-07 57.4 48 62.5
Prupe.7G134600 Prunus persica HOM05D000955 ORTHO05D003340 9.3e-07 57.0 94 35.1
CiPaw.01G019000 Carya illinoinensis HOM05D000955 ORTHO05D003340 1.2e-06 56.6 93 35.5
TAR625G0252 Trochodendron aralioides HOM05D000283 ORTHO05D003340 1.2e-06 56.6 58 44.8
Eucgr.F00235 Eucalyptus grandis HOM05D000955 ORTHO05D003340 1.6e-06 56.2 67 46.3
ECA246G1907 Erigeron canadensis HOM05D000955 ORTHO05D003340 2.1e-06 55.8 88 31.8
Gohir.D06G016400 Gossypium hirsutum HOM05D000955 ORTHO05D001429 2.7e-06 55.5 88 38.6
Atru.chr13.672 Acer truncatum HOM05D000955 ORTHO05D001429 3.5e-06 55.1 71 56.3
Thecc.08G009300 Theobroma cacao HOM05D000955 ORTHO05D001429 3.5e-06 55.1 82 37.8
Gohir.A06G018101 Gossypium hirsutum HOM05D000955 ORTHO05D001429 4.6e-06 54.7 87 39.1
Potri.007G042700 Populus trichocarpa HOM05D000955 ORTHO05D003340 4.6e-06 54.7 87 34.5


User provided reference genes

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