Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0307761 Rosa chinensis HOM05D004504 ORTHO05D005324 4.8e-169 597.8 315 100.0
FAN15G1553 Fragaria x ananassa HOM05D004504 ORTHO05D005324 2.8e-153 545.4 319 91.8
FvH4_2g34560 Fragaria vesca HOM05D004504 ORTHO05D005324 1.2e-151 540.0 320 91.6
FAN20G0303 Fragaria x ananassa HOM05D004504 ORTHO05D005324 6.5e-150 534.3 320 91.2
FAN27G0025 Fragaria x ananassa HOM05D004504 ORTHO05D005324 6.5e-150 534.3 320 90.6
Prupe.1G437500 Prunus persica HOM05D004504 ORTHO05D005324 1.6e-111 406.8 344 72.7
Thecc.08G010300 Theobroma cacao HOM05D004504 ORTHO05D005324 1.1e-93 347.4 331 64.0
QL02p005285 Quercus lobata HOM05D004504 ORTHO05D005324 4.3e-93 345.5 322 63.7
Potri.014G031100 Populus trichocarpa HOM05D004504 ORTHO05D005324 9.5e-93 344.4 333 64.0
Cfa018531 Carpinus fangiana HOM05D004504 ORTHO05D005324 6.2e-92 341.7 308 65.3
Duzib093G0589 Durio zibethinus HOM05D004504 ORTHO05D005324 5.2e-91 338.6 329 63.2
RcHm_v2.0_Chr6g0307601 Rosa chinensis HOM05D004504 ORTHO05D005324 1.2e-90 337.4 267 70.0
CiPaw.15G061000 Carya illinoinensis HOM05D004504 ORTHO05D005324 1.5e-90 337.0 284 68.3
Duzib116G0149 Durio zibethinus HOM05D004504 ORTHO05D005324 1.1e-88 330.9 326 62.6
Potri.002G127100 Populus trichocarpa HOM05D004504 ORTHO05D005324 2.4e-88 329.7 328 61.3
Haze_17534 Corylus avellana HOM05D004504 ORTHO05D005324 4.1e-88 328.9 297 65.7
Haze_17537 Corylus avellana HOM05D004504 ORTHO05D005324 4.1e-88 328.9 297 65.7
MD08G1102600 Malus domestica HOM05D004504 ORTHO05D005324 4.1e-88 328.9 327 62.7
Manes.05G172300 Manihot esculenta HOM05D004504 ORTHO05D005324 2.3e-86 323.2 308 65.9
MELO3C016744.2 Cucumis melo HOM05D004504 ORTHO05D005324 3.9e-86 322.4 313 60.4
CsaV3_4G034230 Cucumis sativus L. HOM05D004504 ORTHO05D005324 3.3e-85 319.3 306 62.1
COL.COLO4_26483 Corchorus olitorius HOM05D004504 ORTHO05D005324 5.6e-85 318.5 298 65.8
MD15G1084100 Malus domestica HOM05D004504 ORTHO05D005324 7.3e-85 318.2 327 60.2
TWI36G0477 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 7.3e-85 318.2 279 66.7
ClCG05G019780 Citrullus lanatus HOM05D004504 ORTHO05D005324 1.1e-83 314.3 325 61.2
CiPaw.16G045400 Carya illinoinensis HOM05D004504 ORTHO05D005324 5.2e-83 312.0 311 61.1
Sabra14G0022100 Salix brachista HOM05D004504 ORTHO05D005324 6.8e-83 311.6 289 64.7
Manes.18G035600 Manihot esculenta HOM05D004504 ORTHO05D005324 9.9e-82 307.8 287 65.2
TWI36G0121 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 6.4e-81 305.1 326 57.7
Hma1.2p1_0982F.1_g243930 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 1.9e-80 303.5 311 59.5
Sed0018137 Sechium edule HOM05D004504 ORTHO05D005324 3.5e-79 299.3 323 57.9
Sabra02G0099600 Salix brachista HOM05D004504 ORTHO05D005324 1.0e-78 297.7 323 58.2
Gohir.A05G201800 Gossypium hirsutum HOM05D004504 ORTHO05D005324 3.0e-78 296.2 320 58.4
Ciclev10001740m.g Citrus clementina HOM05D004504 ORTHO05D005324 3.9e-78 295.8 342 55.8
Hma1.2p1_0718F.1_g208360 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 1.5e-77 293.9 277 62.5
Gohir.D05G204900 Gossypium hirsutum HOM05D004504 ORTHO05D005324 9.6e-77 291.2 320 57.8
Gorai.009G211200 Gossypium raimondii HOM05D004504 ORTHO05D005324 1.6e-76 290.4 320 58.1
Glyma.06G039100 Glycine max HOM05D004504 ORTHO05D005324 2.8e-76 289.7 317 55.8
ClCG08G015770 Citrullus lanatus HOM05D004504 ORTHO05D005324 5.2e-75 285.4 315 56.8
Phvul.009G064300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 5.2e-75 285.4 300 59.7
VMungo1309G0174 Vigna mungo HOM05D004504 ORTHO05D005324 6.9e-75 285.0 313 57.8
Sed0026223 Sechium edule HOM05D004504 ORTHO05D005324 1.5e-74 283.9 305 56.7
CsaV3_2G027990 Cucumis sativus L. HOM05D004504 ORTHO05D005324 5.8e-74 282.0 312 56.7
MSTRG.22265 Avicennia marina HOM05D004504 ORTHO05D005324 2.9e-73 279.6 317 55.5
TAR625G1455 Trochodendron aralioides HOM05D004504 ORTHO05D005324 1.1e-72 277.7 280 61.8
Glyma.04G038100 Glycine max HOM05D004504 ORTHO05D005324 4.6e-71 272.3 317 56.2
Duzib041G0178 Durio zibethinus HOM05D004504 ORTHO05D005324 1.5e-69 267.3 330 53.9
Gorai.002G131700 Gossypium raimondii HOM05D004504 ORTHO05D005324 1.5e-69 267.3 283 58.0
Gohir.D01G107300 Gossypium hirsutum HOM05D004504 ORTHO05D005324 5.6e-69 265.4 283 57.6
TAR381G0791 Trochodendron aralioides HOM05D004504 ORTHO05D005324 9.6e-69 264.6 325 54.2
Gohir.A01G119100 Gossypium hirsutum HOM05D004504 ORTHO05D005324 1.3e-68 264.2 283 58.3
Oeu029881.1 Olea europaea HOM05D004504 ORTHO05D005324 3.6e-68 262.7 302 57.6
Aqoxy5G01252 Aquilegia oxysepala HOM05D004504 ORTHO05D005324 2.4e-67 260.0 313 54.6
Cc10_g04260 Coffea canephora HOM05D004504 ORTHO05D005324 1.5e-66 257.3 298 58.1
Phvul.001G021300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 3.4e-66 256.1 325 50.2
MSTRG.24329 Avicennia marina HOM05D004504 ORTHO05D005324 5.8e-66 255.4 294 57.1
VMungo0647G0958 Vigna mungo HOM05D004504 ORTHO05D005324 2.2e-65 253.4 312 52.2
Sed0027328 Sechium edule HOM05D004504 ORTHO05D005324 6.4e-65 251.9 279 56.6
Peaxi162Scf00064g00008 Petunia axillaris HOM05D004504 ORTHO05D005324 8.4e-65 251.5 304 52.6
DCAR_012769 Daucus carota HOM05D004504 ORTHO05D005324 4.2e-64 249.2 306 52.6
Lj1g0007502 Lotus japonicus HOM05D004504 ORTHO05D005324 2.1e-63 246.9 287 57.1
Lalb_Chr22g0355171 Lupinus albus HOM05D004504 ORTHO05D005324 3.5e-63 246.1 300 55.3
Medtr3g101560 Medicago truncatula HOM05D004504 ORTHO05D005324 1.8e-62 243.8 312 51.0
MELO3C010878.2 Cucumis melo HOM05D004504 ORTHO05D005324 3.0e-62 243.0 311 50.8
Nitab4.5_0001580g0010 Nicotiana tabacum HOM05D004504 ORTHO05D005324 1.1e-61 241.1 292 53.1
Glyma.14G082300 Glycine max HOM05D004504 ORTHO05D005324 1.9e-61 240.4 285 54.7
MBI06_g24649_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 1.6e-60 237.3 283 56.9
Cpa.g.sc49.5 Carica papaya HOM05D004504 ORTHO05D005324 2.1e-60 236.9 317 52.7
Glyma.17G243000 Glycine max HOM05D004504 ORTHO05D005324 6.2e-60 235.3 288 53.8
Lsat_1_v5_gn_6_114061 Lactuca sativa HOM05D004504 ORTHO05D005324 4.0e-59 232.6 314 51.3
Lalb_Chr24g0399251 Lupinus albus HOM05D004504 ORTHO05D005324 5.3e-59 232.3 273 54.9
MBI02_g02958_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 1.2e-58 231.1 288 55.9
MBI02_g17324_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 2.0e-58 230.3 288 54.9
Actinidia23268 Actinidia chinensis HOM05D001164 ORTHO05D001031 2.6e-58 229.9 280 53.6
AUR62022419 Chenopodium quinoa HOM05D004504 ORTHO05D005324 7.6e-58 228.4 318 50.0
HanXRQChr09g0267891 Helianthus annuus HOM05D004504 ORTHO05D005324 7.6e-58 228.4 333 48.6
Eucgr.F00237 Eucalyptus grandis HOM05D004504 ORTHO05D005324 2.9e-57 226.5 258 57.0
Lalb_Chr23g0267021 Lupinus albus HOM05D004504 ORTHO05D005324 8.4e-57 224.9 301 52.5
DCAR_019457 Daucus carota HOM05D004504 ORTHO05D005324 1.4e-56 224.2 306 53.3
EL10Ac1g01723 Beta vulgaris HOM05D004504 ORTHO05D005324 3.2e-56 223.0 339 48.7
Lj5g0012770 Lotus japonicus HOM05D004504 ORTHO05D005324 3.0e-54 216.5 329 48.6
PSO170G6689 Papaver somniferum HOM05D004504 ORTHO05D005324 5.1e-54 215.7 298 52.3
SalBow7G1688 Salvia bowleyana HOM05D004504 ORTHO05D005324 5.1e-54 215.7 289 53.3
Lsat_1_v5_gn_4_125561 Lactuca sativa HOM05D004504 ORTHO05D005324 6.7e-54 215.3 337 46.9
Atru.chr13.656 Acer truncatum HOM05D004504 ORTHO05D005324 1.1e-53 214.5 259 56.0
Sed0004281 Sechium edule HOM05D004504 ORTHO05D005324 1.1e-53 214.5 287 50.9
Sopen04g032720 Solanum pennellii HOM05D004504 ORTHO05D005324 1.8e-51 207.2 291 49.5
PSO210G2137 Papaver somniferum HOM05D004504 ORTHO05D005324 3.1e-51 206.5 295 50.2
MSTRG.1340 Avicennia marina HOM05D004504 ORTHO05D005324 1.2e-50 204.5 324 47.5
Gohir.A06G017400 Gossypium hirsutum HOM05D004504 ORTHO05D005324 1.0e-49 201.4 286 50.7
Solyc04g079110.1 Solanum lycopersicum HOM05D004504 ORTHO05D005324 1.0e-49 201.4 293 49.1
TPR.G28115 Trifolium pratense HOM05D004504 ORTHO05D005324 1.0e-49 201.4 240 54.2
arahy.Tifrunner.gnm1.ann1.2LG1YU Arachis hypogaea HOM05D004504 ORTHO05D005324 1.4e-48 197.6 336 47.9
Medtr1g019750 Medicago truncatula HOM05D004504 ORTHO05D005324 7.1e-48 195.3 307 46.9
Oeu057287.1 Olea europaea HOM05D004504 ORTHO05D005324 9.3e-48 194.9 150 70.7
PGR083G0364 Punica granatum HOM05D004504 ORTHO05D005324 1.2e-47 194.5 323 48.3
PGSC0003DMG400008020 Solanum tuberosum HOM05D004504 ORTHO05D005324 1.2e-47 194.5 293 47.4
GSVIVG01009517001 Vitis vinifera HOM05D004504 ORTHO05D005324 1.8e-46 190.7 130 79.2
AUR62042173 Chenopodium quinoa HOM05D004504 ORTHO05D005324 6.7e-46 188.7 296 46.6
Carub.0008s0620 Capsella rubella HOM05D004504 ORTHO05D005324 1.5e-45 187.6 344 43.6
AT5G42750 Arabidopsis thaliana HOM05D004504 ORTHO05D005324 1.9e-45 187.2 333 44.7
HanXRQChr16g0507531 Helianthus annuus HOM05D004504 ORTHO05D005324 2.5e-45 186.8 290 45.5
CAN.G1422.9 Capsicum annuum HOM05D000541 ORTHO05D000137 5.7e-45 185.7 354 42.1
Rhsim06G0048600 Rhododendron simsii HOM05D004504 ORTHO05D005324 3.7e-44 183.0 303 47.2
Dinv35969 Davidia involucrata HOM05D004504 ORTHO05D005324 8.2e-44 181.8 285 46.7
Gohir.D06G015500 Gossypium hirsutum HOM05D004504 ORTHO05D005324 8.2e-44 181.8 281 48.8
SHI08291 Sapria himalayana HOM05D004504 ORTHO05D005324 6.9e-43 178.7 295 45.8
Actinidia22620 Actinidia chinensis HOM05D001164 ORTHO05D001031 9.0e-43 178.3 219 53.9
AL8G18380 Arabidopsis lyrata HOM05D004504 ORTHO05D005324 9.0e-43 178.3 344 43.0
TPR.G17544 Trifolium pratense HOM05D004504 ORTHO05D005324 9.0e-43 178.3 305 44.9
Aqoxy6G01353 Aquilegia oxysepala HOM05D004504 ORTHO05D005324 3.4e-42 176.4 311 44.4
Peaxi162Scf00252g00123 Petunia axillaris HOM05D004504 ORTHO05D005324 5.9e-42 175.6 300 45.7
PSO675G2195 Papaver somniferum HOM05D004504 ORTHO05D005324 1.3e-41 174.5 294 44.2
Migut.N02706 Erythranthe guttata HOM05D004504 ORTHO05D005324 2.2e-41 173.7 285 48.1
CDE02G0300 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 2.9e-41 173.3 299 44.8
CDE06G1443 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 2.9e-41 173.3 287 45.6
PGSC0003DMG400015442 Solanum tuberosum HOM05D004504 ORTHO05D005324 1.1e-40 171.4 290 46.6
Aa31LG9G12800 Aethionema arabicum HOM05D004504 ORTHO05D005324 1.4e-40 171.0 329 44.1
Thhalv10003420m.g Eutrema salsugineum HOM05D004504 ORTHO05D005324 2.5e-40 170.2 347 42.4
HPP92_016728 Vanilla planifolia HOM05D004504 ORTHO05D005324 7.2e-40 168.7 292 43.8
PGR031G2315 Punica granatum HOM05D004504 ORTHO05D005324 9.4e-40 168.3 320 40.6
PSO541G3526 Papaver somniferum HOM05D004504 ORTHO05D005324 1.6e-39 167.5 327 40.4
THA.LOC104806943 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 1.6e-39 167.5 360 40.3
Sopen12g030760 Solanum pennellii HOM05D004504 ORTHO05D005324 2.1e-39 167.2 289 44.6
THA.LOC104804561 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 4.6e-39 166.0 299 43.1
CARHR181660 Cardamine hirsuta HOM05D004504 ORTHO05D005324 1.4e-38 164.5 351 42.2
Dinv39324 Davidia involucrata HOM05D004504 ORTHO05D005324 3.0e-38 163.3 223 50.2
A02p27570 Brassica napus HOM05D004504 ORTHO05D005324 5.1e-38 162.5 354 41.5
BraA02t07790Z Brassica rapa HOM05D004504 ORTHO05D005324 5.1e-38 162.5 354 41.5
BcaB07g30603 Brassica carinata HOM05D004504 ORTHO05D005324 1.5e-37 161.0 349 41.3
CAN.G371.30 Capsicum annuum HOM05D004504 ORTHO05D005324 1.9e-37 160.6 303 41.6
BolC2t10378H Brassica oleracea HOM05D004504 ORTHO05D005324 2.5e-37 160.2 355 42.3
BcaC03g16510 Brassica carinata HOM05D004504 ORTHO05D005324 1.7e-36 157.5 355 42.5
C02p43260 Brassica napus HOM05D004504 ORTHO05D005324 1.7e-36 157.5 355 42.5
Gorai.010G018300 Gossypium raimondii HOM05D004504 ORTHO05D005324 6.3e-36 155.6 281 44.1
SGA_v2.0_scaffold14G07036 Striga asiatica HOM05D004504 ORTHO05D005324 8.2e-36 155.2 244 46.3
Nn1g04891 Nelumbo nucifera HOM05D004504 ORTHO05D005324 2.4e-35 153.7 195 53.3
CDE02G3707 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 2.0e-34 150.6 291 41.6
Sc15g0006190 Simmondsia chinensis HOM05D004504 ORTHO05D005324 2.0e-34 150.6 267 41.6
Sc15g0006270 Simmondsia chinensis HOM05D004504 ORTHO05D005324 2.0e-34 150.6 267 41.6
Oeu044838.1 Olea europaea HOM05D004504 ORTHO05D005324 1.7e-33 147.5 178 53.4
Sp2g07370 Schrenkiella parvula HOM05D004504 ORTHO05D005324 3.8e-33 146.4 355 39.2
Lj4P774T14 Lonicera japonica HOM05D004504 ORTHO05D005324 2.5e-32 143.7 231 45.5
Nitab4.5_0007986g0010 Nicotiana tabacum HOM05D004504 ORTHO05D005324 4.2e-32 142.9 231 46.3
unitig_899.g15623 Utricularia gibba HOM05D004504 ORTHO05D005324 1.6e-31 141.0 297 40.1
Psat6g012120 Pisum sativum HOM05D004504 ORTHO05D005324 6.1e-31 139.0 299 38.5
Lj4P54T34 Lonicera japonica HOM05D004504 ORTHO05D005324 2.6e-26 123.6 112 64.3
CDE09G0998 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 1.7e-25 120.9 279 36.2
Eucgr.F02356 Eucalyptus grandis HOM05D004504 ORTHO05D005324 8.5e-25 118.6 284 40.8
unitig_26.g10024 Utricularia gibba HOM05D004504 ORTHO05D005324 8.0e-23 112.1 279 38.7
Oeu011558.1 Olea europaea HOM05D004504 ORTHO05D005324 6.7e-22 109.0 105 63.8
ATR0100G018 Amborella trichopoda HOM05D004504 ORTHO05D005324 8.8e-22 108.6 142 50.0
SalBow2G2132 Salvia bowleyana HOM05D004504 ORTHO05D005324 1.7e-17 94.4 105 58.1
SGA_v2.0_scaffold208G41968 Striga asiatica HOM05D004504 ORTHO05D005324 1.1e-16 91.7 306 35.3
Oeu011539.1 Olea europaea HOM05D004504 ORTHO05D005324 1.6e-15 87.8 70 71.4
CDE09G1057 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 4.7e-15 86.3 289 29.8
unitig_749.g13680 Utricularia gibba HOM05D004504 ORTHO05D005324 2.8e-12 77.0 278 32.4
THA.LOC109116829 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 4.8e-12 76.3 122 47.5
unitig_744.g24589 Utricularia gibba HOM05D004504 ORTHO05D005324 4.1e-11 73.2 237 34.2
Zm00001eb315000 Zea mays HOM05D004504 ORTHO05D005324 4.1e-11 73.2 183 35.5
Nitab4.5_0000260g0090 Nicotiana tabacum HOM05D006303 ORTHO05D008007 1.1e-08 65.1 93 49.5
GSVIVG01017928001 Vitis vinifera HOM05D006303 ORTHO05D008007 1.1e-08 65.1 83 51.8
Sed0009344 Sechium edule HOM05D006303 ORTHO05D008007 2.5e-08 63.9 350 27.4
Lj6C598T9 Lonicera japonica HOM05D006303 ORTHO05D008007 3.2e-08 63.5 86 46.5
Os09g0459500 Oryza sativa ssp. japonica HOM05D004504 ORTHO05D005324 3.2e-08 63.5 78 51.3
BcaC04g23610 Brassica carinata HOM05D006303 ORTHO05D008007 7.2e-08 62.4 302 27.2
CsaV3_6G038260 Cucumis sativus L. HOM05D006303 ORTHO05D008007 7.2e-08 62.4 314 26.4
Nitab4.5_0007531g0010 Nicotiana tabacum HOM05D006303 ORTHO05D008007 1.2e-07 61.6 93 48.4
Prupe.1G155600 Prunus persica HOM05D006303 ORTHO05D008007 1.2e-07 61.6 85 48.2
BcaB04g19742 Brassica carinata HOM05D006303 ORTHO05D008007 1.6e-07 61.2 318 25.5
Lj1g0001361 Lotus japonicus HOM05D006303 ORTHO05D008007 1.6e-07 61.2 86 50.0
Medtr5g005960 Medicago truncatula HOM05D006303 ORTHO05D008007 1.6e-07 61.2 346 26.6
MELO3C014489.2 Cucumis melo HOM05D006303 ORTHO05D008007 2.7e-07 60.5 346 26.6
Peaxi162Scf00437g00041 Petunia axillaris HOM05D006303 ORTHO05D008007 2.7e-07 60.5 359 27.3
BolC9t53571H Brassica oleracea HOM05D006303 ORTHO05D008007 4.7e-07 59.7 309 26.2
MD13G1188500 Malus domestica HOM05D006303 ORTHO05D008007 4.7e-07 59.7 84 48.8
VMungo1215G3149 Vigna mungo HOM05D006303 ORTHO05D008007 6.1e-07 59.3 86 50.0
HanXRQChr15g0466041 Helianthus annuus HOM05D006303 ORTHO05D008007 1.8e-06 57.8 321 28.7
AL6G38240 Arabidopsis lyrata HOM05D006303 ORTHO05D008007 2.3e-06 57.4 88 47.7
ClCG06G006020 Citrullus lanatus HOM05D006303 ORTHO05D008007 3.0e-06 57.0 334 26.6
arahy.Tifrunner.gnm1.ann1.RSQ2PF Arachis hypogaea HOM05D006303 ORTHO05D008007 4.0e-06 56.6 87 48.3
Sopen09g030560 Solanum pennellii HOM05D006303 ORTHO05D008007 5.2e-06 56.2 350 26.6
BcaNung03972 Brassica carinata HOM05D006303 ORTHO05D008007 6.8e-06 55.8 91 44.0
COL.COLO4_06194 Corchorus olitorius HOM05D006303 ORTHO05D008007 6.8e-06 55.8 303 26.7
Ca_24387_v3 Cicer arietinum L. HOM05D006303 ORTHO05D008007 8.8e-06 55.5 89 46.1


User provided reference genes

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