Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0307691 Rosa chinensis HOM05D004259 ORTHO05D005014 6.4e-210 733.8 364 100.0
FvH4_2g34610 Fragaria vesca HOM05D004259 ORTHO05D005014 2.6e-203 711.8 364 96.2
FAN15G2861 Fragaria x ananassa HOM05D001625 ORTHO05D005014 3.8e-202 708.0 362 96.7
FAN20G1942 Fragaria x ananassa HOM05D004259 ORTHO05D005014 4.9e-202 707.6 364 95.9
FAN27G2417 Fragaria x ananassa HOM05D004259 ORTHO05D005014 1.9e-185 652.5 364 90.1
MD08G1103300 Malus domestica HOM05D004259 ORTHO05D005014 5.5e-169 597.8 364 80.5
Atru.chr8.1940 Acer truncatum HOM05D004259 ORTHO05D005014 2.0e-166 589.3 364 77.5
Ciclev10012027m.g Citrus clementina HOM05D004259 ORTHO05D005014 3.8e-162 575.1 364 76.4
Cfa018528 Carpinus fangiana HOM05D004259 ORTHO05D005014 1.6e-160 569.7 360 75.6
CANSAT01G2810 Cannabis sativa HOM05D004259 ORTHO05D005014 4.0e-159 565.1 362 74.3
Duzib128G0657 Durio zibethinus HOM05D004259 ORTHO05D005014 1.2e-158 563.5 361 74.0
CSS0003524 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 2.6e-158 562.4 364 73.9
Manes.08G078200 Manihot esculenta HOM05D004259 ORTHO05D005014 3.4e-158 562.0 364 73.9
Cpa.g.sc973.4 Carica papaya HOM05D004259 ORTHO05D005014 4.8e-157 558.1 364 75.3
PSO675G0522 Papaver somniferum HOM05D004259 ORTHO05D005014 6.3e-157 557.8 363 74.1
Potri.003G094800 Populus trichocarpa HOM05D004259 ORTHO05D005014 2.4e-156 555.8 364 73.6
Thecc.05G042500 Theobroma cacao HOM05D004259 ORTHO05D005014 3.1e-156 555.4 361 74.2
CiPaw.15G061500 Carya illinoinensis HOM05D004259 ORTHO05D005014 9.1e-156 553.9 358 74.3
Gohir.D11G345100 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.2e-155 553.5 362 72.7
Gorai.007G375500 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.6e-155 553.1 362 72.7
Sed0023883 Sechium edule HOM05D004259 ORTHO05D005014 3.5e-155 552.0 361 73.1
Gohir.A11G326200 Gossypium hirsutum HOM05D004259 ORTHO05D005014 5.9e-155 551.2 362 72.4
TAR376G0692 Trochodendron aralioides HOM05D004259 ORTHO05D005014 1.3e-154 550.1 357 73.4
PSO339G6255 Papaver somniferum HOM05D004259 ORTHO05D005014 1.1e-153 547.0 363 72.7
QL02p005360 Quercus lobata HOM05D004259 ORTHO05D005014 4.2e-153 545.0 413 66.6
CsaV3_2G028020 Cucumis sativus L. HOM05D004259 ORTHO05D005014 1.2e-152 543.5 362 72.7
PSO541G1765 Papaver somniferum HOM05D004259 ORTHO05D005014 2.1e-152 542.7 363 72.2
Migut.N02703 Erythranthe guttata HOM05D004259 ORTHO05D005014 2.8e-152 542.3 364 70.6
ClCG08G015740 Citrullus lanatus HOM05D004259 ORTHO05D005014 4.7e-152 541.6 372 70.4
MELO3C010882.2 Cucumis melo HOM05D004259 ORTHO05D005014 8.0e-152 540.8 362 72.1
MSTRG.24327 Avicennia marina HOM05D004259 ORTHO05D005014 2.3e-151 539.3 364 70.3
HanXRQChr04g0103531 Helianthus annuus HOM05D004259 ORTHO05D005014 9.8e-150 533.9 364 70.3
Lj3C736T6 Lonicera japonica HOM05D004259 ORTHO05D005014 1.7e-149 533.1 364 71.2
Haze_17552 Corylus avellana HOM05D004259 ORTHO05D005014 4.9e-149 531.6 355 73.5
Peaxi162Scf00162g00029 Petunia axillaris HOM05D004259 ORTHO05D005014 6.3e-149 531.2 372 67.5
MBI02_g17334_MAGBIO Magnolia biondii HOM05D004259 ORTHO05D005014 1.1e-148 530.4 393 66.4
Aqoxy7G01016 Aquilegia oxysepala HOM05D004259 ORTHO05D005014 5.4e-148 528.1 362 71.5
Nn1g05830 Nelumbo nucifera HOM05D004259 ORTHO05D005014 5.4e-148 528.1 361 70.1
AUR62039303 Chenopodium quinoa HOM05D004259 ORTHO05D005014 7.0e-148 527.7 364 68.4
Lsat_1_v5_gn_1_20280 Lactuca sativa HOM05D004259 ORTHO05D005014 1.2e-147 526.9 364 69.8
Oeu018211.1 Olea europaea HOM05D004259 ORTHO05D005014 2.0e-147 526.2 376 67.8
Peaxi162Scf00929g00211 Petunia axillaris HOM05D004259 ORTHO05D005014 2.0e-147 526.2 372 67.5
THA.LOC104806568 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 5.9e-147 524.6 361 69.8
EL10Ac3g06655 Beta vulgaris HOM05D004259 ORTHO05D005014 2.9e-146 522.3 364 67.3
AUR62022427 Chenopodium quinoa HOM05D004259 ORTHO05D005014 3.8e-146 521.9 364 67.6
Sabra03G0064000 Salix brachista HOM05D004259 ORTHO05D005014 4.3e-145 518.5 357 70.6
BraA05t19805Z Brassica rapa HOM05D004259 ORTHO05D005014 9.5e-145 517.3 363 67.5
Glyma.14G082100 Glycine max HOM05D004259 ORTHO05D005014 9.5e-145 517.3 356 70.2
THA.LOC104809222 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 9.5e-145 517.3 365 68.5
Sabra11G0061200 Salix brachista HOM05D004259 ORTHO05D005014 2.1e-144 516.2 359 69.9
CAN.G65.190 Capsicum annuum HOM05D004259 ORTHO05D005014 2.8e-144 515.8 369 66.9
A05p08400 Brassica napus HOM05D004259 ORTHO05D005014 8.0e-144 514.2 363 67.2
PGSC0003DMG400027003 Solanum tuberosum HOM05D004259 ORTHO05D005014 1.0e-143 513.8 362 66.6
Sopen06g029870 Solanum pennellii HOM05D004259 ORTHO05D005014 1.8e-143 513.1 362 66.6
C04p10400 Brassica napus HOM05D004259 ORTHO05D005014 3.1e-143 512.3 363 67.5
Solyc06g073510.3 Solanum lycopersicum HOM05D004259 ORTHO05D005014 3.1e-143 512.3 362 66.3
BolC4t22638H Brassica oleracea HOM05D004259 ORTHO05D005014 4.0e-143 511.9 363 67.2
PGR031G2227 Punica granatum HOM05D004259 ORTHO05D005014 6.8e-143 511.1 362 68.2
BcaB02g09273 Brassica carinata HOM05D004259 ORTHO05D005014 8.9e-143 510.8 363 66.9
BcaC02g11869 Brassica carinata HOM05D004259 ORTHO05D005014 3.4e-142 508.8 363 66.9
Thhalv10016846m.g Eutrema salsugineum HOM05D004259 ORTHO05D005014 4.4e-142 508.4 363 66.7
Lj5g0003666 Lotus japonicus HOM05D004259 ORTHO05D005014 5.8e-142 508.1 360 66.9
CARHR132030 Cardamine hirsuta HOM05D004259 ORTHO05D005014 9.8e-142 507.3 362 66.9
Lalb_Chr19g0129351 Lupinus albus HOM05D004259 ORTHO05D005014 1.7e-141 506.5 362 67.4
Phvul.001G021100 Phaseolus vulgaris HOM05D004259 ORTHO05D005014 4.9e-141 505.0 358 67.6
Ca_01811_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 6.4e-141 504.6 353 69.4
Ca_29610_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 6.4e-141 504.6 353 69.4
VMungo0647G0522 Vigna mungo HOM05D004259 ORTHO05D005014 8.3e-141 504.2 358 68.4
ATR0100G023 Amborella trichopoda HOM05D004259 ORTHO05D005014 1.1e-140 503.8 362 66.9
Carub.0004s1948 Capsella rubella HOM05D004259 ORTHO05D005014 1.1e-140 503.8 363 66.1
Sp4g19910 Schrenkiella parvula HOM05D004259 ORTHO05D005014 1.1e-140 503.8 363 66.1
Dinv39327 Davidia involucrata HOM05D004259 ORTHO05D005014 2.4e-140 502.7 322 74.5
Eucgr.F00239 Eucalyptus grandis HOM05D004259 ORTHO05D005014 5.4e-140 501.5 359 66.0
MD15G1084600 Malus domestica HOM05D004259 ORTHO05D005014 9.2e-140 500.7 375 68.8
Nitab4.5_0000111g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.2e-139 500.4 381 63.8
Nitab4.5_0002664g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 2.0e-139 499.6 396 62.6
AL4G34050 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 2.7e-139 499.2 363 66.1
Rhsim10G0028600 Rhododendron simsii HOM05D004259 ORTHO05D005014 2.7e-139 499.2 364 68.4
TWI53G0519 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 1.0e-138 497.3 363 67.8
CDE10G1325 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 2.3e-138 496.1 355 66.8
Nitab4.5_0002045g0130 Nicotiana tabacum HOM05D004259 ORTHO05D005014 6.6e-138 494.6 363 65.3
Medtr1g019770 Medicago truncatula HOM05D004259 ORTHO05D005014 1.1e-137 493.8 350 68.9
unitig_26.g10027 Utricularia gibba HOM05D004259 ORTHO05D005014 1.1e-137 493.8 362 65.7
Psat6g012600 Pisum sativum HOM05D004259 ORTHO05D005014 2.5e-137 492.7 350 68.3
TPR.G17553 Trifolium pratense HOM05D004259 ORTHO05D005014 2.5e-137 492.7 350 68.0
Peaxi162Scf00003g02311 Petunia axillaris HOM05D004259 ORTHO05D005014 4.7e-136 488.4 397 61.7
SalBow2G1152 Salvia bowleyana HOM05D004259 ORTHO05D005014 4.0e-135 485.3 389 61.2
SalBow2G2463 Salvia bowleyana HOM05D004259 ORTHO05D005014 2.0e-134 483.0 389 60.9
SalBow2G2012 Salvia bowleyana HOM05D004259 ORTHO05D005014 4.4e-134 481.9 389 60.7
AT2G37560 Arabidopsis thaliana HOM05D004259 ORTHO05D005014 1.3e-133 480.3 363 63.4
Prupe.1G438300 Prunus persica HOM05D004259 ORTHO05D005014 2.9e-133 479.2 298 79.5
Sc07g0003460 Simmondsia chinensis HOM05D004259 ORTHO05D005014 8.3e-133 477.6 317 71.6
Os03g0184700 Oryza sativa ssp. japonica HOM05D004259 ORTHO05D005014 1.9e-132 476.5 355 62.3
arahy.Tifrunner.gnm1.ann1.1PWX74 Arachis hypogaea HOM05D004259 ORTHO05D005014 2.4e-132 476.1 362 65.7
arahy.Tifrunner.gnm1.ann1.63NC9C Arachis hypogaea HOM05D004259 ORTHO05D005014 2.4e-132 476.1 362 65.7
Haze_17543 Corylus avellana HOM05D004259 ORTHO05D005014 2.4e-132 476.1 316 72.5
ECA247G2793 Erigeron canadensis HOM05D004259 ORTHO05D005014 1.6e-131 473.4 329 69.0
RcHm_v2.0_Chr6g0307531 Rosa chinensis HOM05D004259 ORTHO05D005014 4.6e-131 471.9 358 72.1
Zm00001eb248940 Zea mays HOM05D004259 ORTHO05D005014 6.6e-130 468.0 357 62.7
Cc10_g04310 Coffea canephora HOM05D004259 ORTHO05D005014 6.2e-128 461.5 364 61.8
CSS0037728 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 3.1e-127 459.1 364 62.9
GSVIVG01009522001 Vitis vinifera HOM05D004259 ORTHO05D005014 2.6e-126 456.1 315 70.5
SalBow3G4106 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.1e-124 450.7 364 61.0
SGA_v2.0_scaffold204G41641 Striga asiatica HOM05D004259 ORTHO05D005014 2.4e-124 449.5 366 62.0
Nitab4.5_0004918g0050 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.2e-120 437.2 354 61.3
Glyma.17G243200 Glycine max HOM05D004259 ORTHO05D005014 8.1e-120 434.5 292 69.5
Rhsim07G0229700 Rhododendron simsii HOM05D004259 ORTHO05D005014 8.1e-120 434.5 335 65.1
Hma1.2p1_0718F.1_g208420 Hydrangea macrophylla HOM05D004259 ORTHO05D005014 1.2e-118 430.6 301 70.8
Ah.05g168820 Amaranthus hybridus HOM05D001625 ORTHO05D005014 4.9e-117 425.2 298 68.1
SalBow2G2610 Salvia bowleyana HOM05D004259 ORTHO05D005014 2.4e-108 396.4 389 53.7
vmacro04457 Vaccinium macrocarpon HOM05D004259 ORTHO05D005014 2.3e-106 389.8 364 57.1
SalBow2G0695 Salvia bowleyana HOM05D004259 ORTHO05D005014 6.2e-104 381.7 287 64.5
SEGI_21568 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 5.3e-103 378.6 287 60.6
Actinidia29866 Actinidia chinensis HOM05D004259 ORTHO05D005014 2.2e-101 373.2 364 53.8
AagrBONN_evm.TU.Sc2ySwM_344.5209 Anthoceros agrestis HOM05D004259 ORTHO05D005014 2.4e-100 369.8 361 50.4
Pp3c18_14740 Physcomitrium patens HOM05D004259 ORTHO05D005014 4.2e-100 369.0 350 51.4
COL.COLO4_14836 Corchorus olitorius HOM05D004259 ORTHO05D005014 2.1e-96 356.7 361 52.1
SHI12655 Sapria himalayana HOM05D004259 ORTHO05D005014 5.3e-95 352.1 367 50.7
SMO147G0302 Selaginella moellendorffii HOM05D004259 ORTHO05D005014 1.3e-93 347.4 339 50.4
Mapoly0106s0035 Marchantia polymorpha HOM05D004259 ORTHO05D005014 3.8e-93 345.9 317 52.1
TWI53G0792 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 3.8e-93 345.9 268 64.6
CBR_g6665 Chara braunii HOM05D004259 ORTHO05D005014 4.2e-92 342.4 336 49.1
Rhsim10G0028100 Rhododendron simsii HOM05D004259 ORTHO05D005014 5.7e-81 305.4 221 69.2
HPP92_027219 Vanilla planifolia HOM05D004259 ORTHO05D005014 1.2e-62 244.6 152 72.4
MCO16G222 Micromonas commoda HOM05D004259 ORTHO05D005014 2.2e-56 223.8 342 36.5
CDE10G0377 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 7.2e-52 208.8 135 71.1
PRCOL_00004897 Prasinoderma coloniale HOM05D004259 ORTHO05D005014 8.5e-45 185.3 369 31.7
HPP92_027220 Vanilla planifolia HOM05D004259 ORTHO05D005014 4.5e-38 162.9 162 54.3
Gohir.D10G137766 Gossypium hirsutum HOM05D004259 ORTHO05D005014 5.5e-36 156.0 137 56.2
Cre03.g199400 Chlamydomonas reinhardtii HOM05D004259 ORTHO05D005014 2.8e-35 153.7 370 30.8
Nitab4.5_0000017g0120 Nicotiana tabacum HOM05D004259 ORTHO05D005014 3.7e-32 143.3 199 41.7
Aa31LG5G22990 Aethionema arabicum HOM05D004259 ORTHO05D005014 6.3e-32 142.5 138 53.6
AL4G34080 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 2.0e-30 137.5 103 64.1
Cc00_g16720 Coffea canephora HOM05D004259 ORTHO05D005014 7.8e-30 135.6 116 60.3
Gohir.D12G080700 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.7e-29 134.4 87 72.4
Gohir.D02G104501 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.5e-28 131.3 104 61.5
Gorai.005G118700 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.5e-28 131.3 85 71.8
Gorai.011G277900 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.5e-28 131.3 87 70.1
Actinidia38053 Actinidia chinensis HOM05D004259 ORTHO05D005014 2.6e-25 120.6 85 70.6
Gohir.D03G074850 Gossypium hirsutum HOM05D004259 ORTHO05D005014 9.8e-25 118.6 79 70.9
Cfa024619 Carpinus fangiana HOM05D004259 ORTHO05D005014 1.7e-24 117.9 351 25.6
Gohir.D01G124400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.7e-24 116.7 78 70.5
Gohir.D02G123750 Gossypium hirsutum HOM05D004259 ORTHO05D005014 8.3e-24 115.5 78 69.2
Gohir.D09G120150 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.4e-23 114.8 78 69.2
Gorai.005G130400 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.9e-23 114.4 78 69.2
Gorai.008G056700 Gossypium raimondii HOM05D004259 ORTHO05D005014 3.2e-23 113.6 79 68.4
Gorai.004G133100 Gossypium raimondii HOM05D004259 ORTHO05D005014 2.0e-22 110.9 78 66.7
PSO724G0286 Papaver somniferum HOM05D004259 ORTHO05D005014 2.7e-22 110.5 110 52.7
PSO724G0742 Papaver somniferum HOM05D004259 ORTHO05D005014 7.8e-22 109.0 110 52.7
Gohir.D10G134400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.0e-21 107.1 70 70.0
Gohir.D04G089650 Gossypium hirsutum HOM05D004259 ORTHO05D005014 5.0e-21 106.3 79 63.3
Gorai.012G099900 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.1e-20 105.1 79 62.0
Aa31sc112G60 Aethionema arabicum HOM05D004259 ORTHO05D005014 3.3e-20 103.6 82 63.4
Cc06_g20720 Coffea canephora HOM05D004259 ORTHO05D005014 5.6e-20 102.8 104 56.7
Gorai.006G043100 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.6e-19 101.3 101 52.5
SEGI_22221 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 7.5e-17 92.4 76 57.9
Cc11_g02680 Coffea canephora HOM05D004259 ORTHO05D005014 4.1e-15 86.7 62 67.7
Sabra15G0136400 Salix brachista HOM05D004259 ORTHO05D004947 1.6e-14 84.7 67 67.2
EL10Ac4g08135 Beta vulgaris HOM05D004259 ORTHO05D005014 3.0e-13 80.5 45 80.0
Gohir.D09G088725 Gossypium hirsutum HOM05D004259 ORTHO05D005014 6.6e-13 79.3 56 67.9
Gorai.011G153000 Gossypium raimondii HOM05D004259 ORTHO05D005014 2.3e-10 70.9 90 45.6
Cc00_g00370 Coffea canephora HOM05D004259 ORTHO05D005014 9.9e-09 65.5 52 57.7
Gohir.D09G037800 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.9e-08 63.9 43 69.8
Cc01_g09720 Coffea canephora HOM05D004259 ORTHO05D005014 1.4e-07 61.6 43 67.4
Gohir.D01G066700 Gossypium hirsutum HOM05D000706 ORTHO05D013538 1.4e-07 61.6 49 55.1
Gohir.D01G081300 Gossypium hirsutum HOM05D000706 ORTHO05D013538 4.1e-07 60.1 37 67.6
Gorai.007G356500 Gossypium raimondii HOM05D000706 ORTHO05D013538 4.1e-07 60.1 49 55.1
Gohir.D13G142000 Gossypium hirsutum HOM05D000706 ORTHO05D013538 5.4e-07 59.7 49 55.1
Sabra07G0018600 Salix brachista HOM05D004259 ORTHO05D003320 5.4e-07 59.7 60 55.0
Sabra18G0120100 Salix brachista HOM05D001081 ORTHO05D003320 5.4e-07 59.7 60 55.0
Gohir.D03G122500 Gossypium hirsutum HOM05D000706 ORTHO05D013538 9.2e-07 58.9 43 62.8
Cc02_g31720 Coffea canephora HOM05D004259 ORTHO05D005014 1.6e-06 58.2 42 64.3
Gohir.D06G127100 Gossypium hirsutum HOM05D000706 ORTHO05D013538 1.6e-06 58.2 79 41.8
Gorai.010G148400 Gossypium raimondii HOM05D000706 ORTHO05D013538 1.6e-06 58.2 79 41.8
Gohir.D06G138051 Gossypium hirsutum HOM05D000706 ORTHO05D013538 3.5e-06 57.0 37 64.9
Gohir.D09G037400 Gossypium hirsutum HOM05D000706 ORTHO05D013538 4.6e-06 56.6 37 62.2
Gohir.D09G143401 Gossypium hirsutum HOM05D000706 ORTHO05D013538 4.6e-06 56.6 49 53.1


User provided reference genes

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