Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0307601 Rosa chinensis HOM05D004504 ORTHO05D005324 2.4e-131 472.2 248 100.0
RcHm_v2.0_Chr6g0307761 Rosa chinensis HOM05D004504 ORTHO05D005324 6.3e-92 341.3 267 70.0
FAN15G1553 Fragaria x ananassa HOM05D004504 ORTHO05D005324 1.6e-82 310.1 271 64.9
FAN20G0303 Fragaria x ananassa HOM05D004504 ORTHO05D005324 1.6e-82 310.1 271 65.7
FvH4_2g34560 Fragaria vesca HOM05D004504 ORTHO05D005324 2.0e-82 309.7 271 64.9
FAN27G0025 Fragaria x ananassa HOM05D004504 ORTHO05D005324 1.3e-81 307.0 271 64.6
Prupe.1G437500 Prunus persica HOM05D004504 ORTHO05D005324 1.1e-56 224.2 297 52.9
Thecc.08G010300 Theobroma cacao HOM05D004504 ORTHO05D005324 1.1e-51 207.6 289 48.4
QL02p005285 Quercus lobata HOM05D004504 ORTHO05D005324 1.7e-49 200.3 282 47.5
Manes.05G172300 Manihot esculenta HOM05D004504 ORTHO05D005324 1.1e-48 197.6 257 52.5
Potri.014G031100 Populus trichocarpa HOM05D004504 ORTHO05D005324 1.1e-48 197.6 285 49.8
COL.COLO4_26483 Corchorus olitorius HOM05D004504 ORTHO05D005324 2.1e-47 193.4 248 51.2
Potri.002G127100 Populus trichocarpa HOM05D004504 ORTHO05D005324 3.1e-46 189.5 287 47.7
Duzib116G0149 Durio zibethinus HOM05D004504 ORTHO05D005324 4.0e-46 189.1 287 47.0
Duzib093G0589 Durio zibethinus HOM05D004504 ORTHO05D005324 5.3e-46 188.7 285 47.7
ClCG05G019780 Citrullus lanatus HOM05D004504 ORTHO05D005324 6.9e-46 188.3 278 48.2
CsaV3_4G034230 Cucumis sativus L. HOM05D004504 ORTHO05D005324 9.0e-46 188.0 251 50.6
Cfa018531 Carpinus fangiana HOM05D004504 ORTHO05D005324 2.6e-45 186.4 269 48.3
MELO3C016744.2 Cucumis melo HOM05D004504 ORTHO05D005324 7.6e-45 184.9 258 48.1
Hma1.2p1_0982F.1_g243930 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 7.6e-45 184.9 253 49.4
CiPaw.15G061000 Carya illinoinensis HOM05D004504 ORTHO05D005324 1.1e-43 181.0 243 49.4
Sabra02G0099600 Salix brachista HOM05D004504 ORTHO05D005324 1.4e-43 180.6 269 48.0
Haze_17534 Corylus avellana HOM05D004504 ORTHO05D005324 2.4e-43 179.9 252 50.0
Haze_17537 Corylus avellana HOM05D004504 ORTHO05D005324 2.4e-43 179.9 252 50.0
TWI36G0477 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 3.2e-43 179.5 237 51.1
Sed0018137 Sechium edule HOM05D004504 ORTHO05D005324 4.6e-42 175.6 271 47.2
Manes.18G035600 Manihot esculenta HOM05D004504 ORTHO05D005324 3.9e-41 172.6 239 47.7
CiPaw.16G045400 Carya illinoinensis HOM05D004504 ORTHO05D005324 6.7e-41 171.8 271 45.4
Sabra14G0022100 Salix brachista HOM05D004504 ORTHO05D005324 6.7e-41 171.8 245 48.6
TWI36G0121 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 1.5e-40 170.6 284 45.1
Aqoxy5G01252 Aquilegia oxysepala HOM05D004504 ORTHO05D005324 9.6e-40 167.9 242 48.3
ClCG08G015770 Citrullus lanatus HOM05D004504 ORTHO05D005324 1.3e-39 167.5 259 47.1
CsaV3_2G027990 Cucumis sativus L. HOM05D004504 ORTHO05D005324 2.1e-39 166.8 256 47.3
Glyma.06G039100 Glycine max HOM05D004504 ORTHO05D005324 8.1e-39 164.9 265 44.9
Sed0026223 Sechium edule HOM05D004504 ORTHO05D005324 6.9e-38 161.8 248 45.6
Medtr3g101560 Medicago truncatula HOM05D004504 ORTHO05D005324 9.0e-38 161.4 263 42.6
Phvul.009G064300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 1.2e-37 161.0 248 45.6
VMungo1309G0174 Vigna mungo HOM05D004504 ORTHO05D005324 1.2e-37 161.0 262 44.3
TAR625G1455 Trochodendron aralioides HOM05D004504 ORTHO05D005324 1.5e-37 160.6 221 50.7
Duzib041G0178 Durio zibethinus HOM05D004504 ORTHO05D005324 3.4e-37 159.5 283 44.2
Oeu029881.1 Olea europaea HOM05D004504 ORTHO05D005324 1.3e-36 157.5 232 48.7
Ciclev10001740m.g Citrus clementina HOM05D004504 ORTHO05D005324 1.7e-36 157.1 297 42.1
MD08G1102600 Malus domestica HOM05D004504 ORTHO05D005324 1.7e-36 157.1 281 41.6
TAR381G0791 Trochodendron aralioides HOM05D004504 ORTHO05D005324 3.8e-36 156.0 264 45.1
Gorai.009G211200 Gossypium raimondii HOM05D004504 ORTHO05D005324 4.9e-36 155.6 279 42.7
Lalb_Chr22g0355171 Lupinus albus HOM05D004504 ORTHO05D005324 1.1e-35 154.5 257 44.4
Glyma.04G038100 Glycine max HOM05D004504 ORTHO05D005324 1.4e-35 154.1 271 43.2
Gohir.A05G201800 Gossypium hirsutum HOM05D004504 ORTHO05D005324 4.2e-35 152.5 278 42.1
MD15G1084100 Malus domestica HOM05D004504 ORTHO05D005324 1.2e-34 151.0 283 40.3
Atru.chr13.656 Acer truncatum HOM05D004504 ORTHO05D005324 2.1e-34 150.2 254 45.7
Gohir.D05G204900 Gossypium hirsutum HOM05D004504 ORTHO05D005324 2.1e-34 150.2 279 42.3
Hma1.2p1_0718F.1_g208360 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 1.0e-33 147.9 212 46.7
Cc10_g04260 Coffea canephora HOM05D004504 ORTHO05D005324 1.8e-33 147.1 250 42.0
Lj1g0007502 Lotus japonicus HOM05D004504 ORTHO05D005324 1.8e-33 147.1 236 46.6
Actinidia23268 Actinidia chinensis HOM05D001164 ORTHO05D001031 3.0e-33 146.4 217 46.5
MSTRG.22265 Avicennia marina HOM05D004504 ORTHO05D005324 3.0e-33 146.4 273 41.8
MSTRG.24329 Avicennia marina HOM05D004504 ORTHO05D005324 6.7e-33 145.2 251 45.8
Gohir.A01G119100 Gossypium hirsutum HOM05D004504 ORTHO05D005324 1.5e-32 144.1 234 45.7
PSO210G2137 Papaver somniferum HOM05D004504 ORTHO05D005324 3.3e-32 142.9 251 44.6
DCAR_012769 Daucus carota HOM05D004504 ORTHO05D005324 4.3e-32 142.5 263 41.8
Gohir.D01G107300 Gossypium hirsutum HOM05D004504 ORTHO05D005324 4.3e-32 142.5 234 46.2
MBI06_g24649_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 7.4e-32 141.7 228 46.5
Gorai.002G131700 Gossypium raimondii HOM05D004504 ORTHO05D005324 9.6e-32 141.4 234 45.7
PSO170G6689 Papaver somniferum HOM05D004504 ORTHO05D005324 2.8e-31 139.8 262 44.3
Nitab4.5_0001580g0010 Nicotiana tabacum HOM05D004504 ORTHO05D005324 6.2e-31 138.7 231 42.9
Sed0027328 Sechium edule HOM05D004504 ORTHO05D005324 6.2e-31 138.7 216 44.9
SalBow7G1688 Salvia bowleyana HOM05D004504 ORTHO05D005324 1.1e-30 137.9 239 44.8
Cpa.g.sc49.5 Carica papaya HOM05D004504 ORTHO05D005324 1.4e-30 137.5 271 42.8
Lsat_1_v5_gn_6_114061 Lactuca sativa HOM05D004504 ORTHO05D005324 9.0e-30 134.8 264 42.8
HanXRQChr09g0267891 Helianthus annuus HOM05D004504 ORTHO05D005324 2.0e-29 133.7 284 39.4
Peaxi162Scf00064g00008 Petunia axillaris HOM05D004504 ORTHO05D005324 2.6e-29 133.3 254 40.6
Lalb_Chr24g0399251 Lupinus albus HOM05D004504 ORTHO05D005324 4.5e-29 132.5 234 42.7
VMungo0647G0958 Vigna mungo HOM05D004504 ORTHO05D005324 5.8e-29 132.1 270 39.3
Phvul.001G021300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 7.6e-29 131.7 273 40.3
AUR62042173 Chenopodium quinoa HOM05D004504 ORTHO05D005324 1.1e-27 127.9 288 38.2
Glyma.14G082300 Glycine max HOM05D004504 ORTHO05D005324 1.4e-27 127.5 238 41.6
MELO3C010878.2 Cucumis melo HOM05D004504 ORTHO05D005324 1.9e-27 127.1 255 40.0
Glyma.17G243000 Glycine max HOM05D004504 ORTHO05D005324 1.9e-27 127.1 250 40.0
Lsat_1_v5_gn_4_125561 Lactuca sativa HOM05D004504 ORTHO05D005324 1.9e-27 127.1 279 38.4
Lj5g0012770 Lotus japonicus HOM05D004504 ORTHO05D005324 3.2e-27 126.3 280 38.6
MBI02_g02958_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 1.2e-26 124.4 230 45.7
MBI02_g17324_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 1.6e-26 124.0 230 44.3
Medtr1g019750 Medicago truncatula HOM05D004504 ORTHO05D005324 1.6e-26 124.0 256 41.4
Peaxi162Scf00252g00123 Petunia axillaris HOM05D004504 ORTHO05D005324 1.6e-26 124.0 233 42.5
Eucgr.F00237 Eucalyptus grandis HOM05D004504 ORTHO05D005324 2.1e-26 123.6 214 42.5
Lj4P54T34 Lonicera japonica HOM05D004504 ORTHO05D005324 2.1e-26 123.6 112 64.3
Dinv39324 Davidia involucrata HOM05D004504 ORTHO05D005324 2.7e-26 123.2 135 55.6
Nn1g04891 Nelumbo nucifera HOM05D004504 ORTHO05D005324 2.7e-26 123.2 114 62.3
AUR62022419 Chenopodium quinoa HOM05D004504 ORTHO05D005324 1.8e-25 120.6 276 37.7
DCAR_019457 Daucus carota HOM05D004504 ORTHO05D005324 2.3e-25 120.2 253 41.5
MSTRG.1340 Avicennia marina HOM05D004504 ORTHO05D005324 3.9e-25 119.4 275 37.8
TPR.G28115 Trifolium pratense HOM05D004504 ORTHO05D005324 6.7e-25 118.6 179 44.7
Lalb_Chr23g0267021 Lupinus albus HOM05D004504 ORTHO05D005324 1.1e-24 117.9 245 42.9
Sopen04g032720 Solanum pennellii HOM05D004504 ORTHO05D005324 1.5e-24 117.5 243 39.1
Aqoxy6G01353 Aquilegia oxysepala HOM05D004504 ORTHO05D005324 5.7e-24 115.5 273 37.0
EL10Ac1g01723 Beta vulgaris HOM05D004504 ORTHO05D005324 1.6e-23 114.0 296 36.5
Solyc04g079110.1 Solanum lycopersicum HOM05D004504 ORTHO05D005324 1.6e-23 114.0 236 39.8
TPR.G17544 Trifolium pratense HOM05D004504 ORTHO05D005324 2.2e-23 113.6 258 38.0
AT5G42750 Arabidopsis thaliana HOM05D004504 ORTHO05D005324 3.7e-23 112.8 271 37.6
Dinv35969 Davidia involucrata HOM05D004504 ORTHO05D005324 3.7e-23 112.8 119 56.3
Sed0004281 Sechium edule HOM05D004504 ORTHO05D005324 3.7e-23 112.8 225 40.9
AL8G18380 Arabidopsis lyrata HOM05D004504 ORTHO05D005324 4.1e-22 109.4 285 35.4
Carub.0008s0620 Capsella rubella HOM05D004504 ORTHO05D005324 4.1e-22 109.4 290 35.2
Psat6g012120 Pisum sativum HOM05D004504 ORTHO05D005324 4.1e-22 109.4 118 61.0
HanXRQChr16g0507531 Helianthus annuus HOM05D004504 ORTHO05D005324 5.3e-22 109.0 237 38.0
SHI08291 Sapria himalayana HOM05D004504 ORTHO05D005324 1.2e-21 107.8 249 37.8
PGR083G0364 Punica granatum HOM05D004504 ORTHO05D005324 3.4e-21 106.3 274 38.7
Thhalv10003420m.g Eutrema salsugineum HOM05D004504 ORTHO05D005324 4.5e-21 105.9 289 35.6
BcaB07g30603 Brassica carinata HOM05D004504 ORTHO05D005324 5.9e-21 105.5 290 35.5
SGA_v2.0_scaffold14G07036 Striga asiatica HOM05D004504 ORTHO05D005324 5.9e-21 105.5 226 39.4
arahy.Tifrunner.gnm1.ann1.2LG1YU Arachis hypogaea HOM05D004504 ORTHO05D005324 1.3e-20 104.4 287 37.3
PGSC0003DMG400008020 Solanum tuberosum HOM05D004504 ORTHO05D005324 1.3e-20 104.4 244 36.5
Lj4P774T14 Lonicera japonica HOM05D004504 ORTHO05D005324 1.7e-20 104.0 155 48.4
THA.LOC104804561 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 1.7e-20 104.0 239 41.4
A02p27570 Brassica napus HOM05D004504 ORTHO05D005324 3.8e-20 102.8 300 36.0
BraA02t07790Z Brassica rapa HOM05D004504 ORTHO05D005324 3.8e-20 102.8 300 36.0
CAN.G1422.9 Capsicum annuum HOM05D000541 ORTHO05D000137 5.0e-20 102.4 268 36.6
Rhsim06G0048600 Rhododendron simsii HOM05D004504 ORTHO05D005324 5.0e-20 102.4 249 38.2
BolC2t10378H Brassica oleracea HOM05D004504 ORTHO05D005324 6.5e-20 102.1 294 35.7
Migut.N02706 Erythranthe guttata HOM05D004504 ORTHO05D005324 8.5e-20 101.7 233 40.3
Aa31LG9G12800 Aethionema arabicum HOM05D004504 ORTHO05D005324 1.1e-19 101.3 256 36.7
CDE02G0300 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 1.1e-19 101.3 239 37.7
BcaC03g16510 Brassica carinata HOM05D004504 ORTHO05D005324 2.5e-19 100.1 294 35.4
C02p43260 Brassica napus HOM05D004504 ORTHO05D005324 2.5e-19 100.1 294 35.4
CDE06G1443 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 2.5e-19 100.1 238 37.8
CARHR181660 Cardamine hirsuta HOM05D004504 ORTHO05D005324 4.2e-19 99.4 288 35.8
Gohir.A06G017400 Gossypium hirsutum HOM05D004504 ORTHO05D005324 5.5e-19 99.0 219 38.8
THA.LOC104806943 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 6.1e-18 95.5 311 32.2
PGSC0003DMG400015442 Solanum tuberosum HOM05D004504 ORTHO05D005324 7.9e-18 95.1 223 40.4
SalBow2G2132 Salvia bowleyana HOM05D004504 ORTHO05D005324 1.4e-17 94.4 105 58.1
PSO675G2195 Papaver somniferum HOM05D004504 ORTHO05D005324 5.1e-17 92.4 243 35.4
HPP92_016728 Vanilla planifolia HOM05D004504 ORTHO05D005324 5.1e-17 92.4 234 38.0
CDE02G3707 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 1.1e-16 91.3 90 57.8
Actinidia22620 Actinidia chinensis HOM05D001164 ORTHO05D001031 9.7e-16 88.2 162 43.2
CDE09G0998 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 1.7e-15 87.4 215 34.0
PSO541G3526 Papaver somniferum HOM05D004504 ORTHO05D005324 1.7e-15 87.4 276 31.9
Sopen12g030760 Solanum pennellii HOM05D004504 ORTHO05D005324 5.3e-14 82.4 217 36.4
CAN.G371.30 Capsicum annuum HOM05D004504 ORTHO05D005324 3.4e-13 79.7 251 32.3
Gohir.D06G015500 Gossypium hirsutum HOM05D004504 ORTHO05D005324 1.3e-12 77.8 219 36.1
Sc15g0006190 Simmondsia chinensis HOM05D004504 ORTHO05D005324 2.2e-12 77.0 215 36.7
Sc15g0006270 Simmondsia chinensis HOM05D004504 ORTHO05D005324 2.2e-12 77.0 215 36.7
unitig_899.g15623 Utricularia gibba HOM05D004504 ORTHO05D005324 2.2e-12 77.0 237 33.8
CDE09G1057 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 5.0e-12 75.9 81 51.9
GSVIVG01009517001 Vitis vinifera HOM05D004504 ORTHO05D005324 6.5e-12 75.5 101 50.5
Sp2g07370 Schrenkiella parvula HOM05D004504 ORTHO05D005324 8.5e-12 75.1 293 30.7
PGR031G2315 Punica granatum HOM05D004504 ORTHO05D005324 7.2e-11 72.0 265 30.2
THA.LOC109116829 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 6.1e-10 68.9 177 40.1
Gorai.010G018300 Gossypium raimondii HOM05D004504 ORTHO05D005324 7.9e-10 68.6 219 35.6
Oeu057287.1 Olea europaea HOM05D004504 ORTHO05D005324 6.7e-09 65.5 139 37.4
Eucgr.F02356 Eucalyptus grandis HOM05D004504 ORTHO05D005324 4.4e-08 62.8 243 32.5
Nitab4.5_0007986g0010 Nicotiana tabacum HOM05D004504 ORTHO05D005324 3.7e-07 59.7 170 34.7
Oeu044838.1 Olea europaea HOM05D004504 ORTHO05D005324 4.1e-06 56.2 46 60.9
Oeu011558.1 Olea europaea HOM05D004504 ORTHO05D005324 9.1e-06 55.1 39 71.8


User provided reference genes

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