Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0307531 Rosa chinensis HOM05D004259 ORTHO05D005014 1.9e-161 572.4 280 100.0
RcHm_v2.0_Chr6g0307691 Rosa chinensis HOM05D004259 ORTHO05D005014 3.5e-131 471.9 358 72.1
FvH4_2g34610 Fragaria vesca HOM05D004259 ORTHO05D005014 1.5e-129 466.5 358 70.9
FAN20G1942 Fragaria x ananassa HOM05D004259 ORTHO05D005014 1.3e-128 463.4 358 70.1
FAN15G2861 Fragaria x ananassa HOM05D001625 ORTHO05D005014 6.2e-128 461.1 356 70.8
FAN27G2417 Fragaria x ananassa HOM05D004259 ORTHO05D005014 4.3e-121 438.3 334 71.3
MD08G1103300 Malus domestica HOM05D004259 ORTHO05D005014 2.8e-104 382.5 357 59.1
Cfa018528 Carpinus fangiana HOM05D004259 ORTHO05D005014 4.5e-102 375.2 358 56.4
Atru.chr8.1940 Acer truncatum HOM05D004259 ORTHO05D005014 5.8e-102 374.8 358 57.5
CANSAT01G2810 Cannabis sativa HOM05D004259 ORTHO05D005014 7.6e-102 374.4 356 55.9
CiPaw.15G061500 Carya illinoinensis HOM05D004259 ORTHO05D005014 1.4e-100 370.2 356 56.5
Sed0023883 Sechium edule HOM05D004259 ORTHO05D005014 1.9e-100 369.8 367 55.6
CsaV3_2G028020 Cucumis sativus L. HOM05D004259 ORTHO05D005014 3.2e-100 369.0 354 56.5
ClCG08G015740 Citrullus lanatus HOM05D004259 ORTHO05D005014 1.2e-99 367.1 366 54.6
Potri.003G094800 Populus trichocarpa HOM05D004259 ORTHO05D005014 1.2e-99 367.1 358 56.4
Ciclev10012027m.g Citrus clementina HOM05D004259 ORTHO05D005014 6.1e-99 364.8 358 57.3
MELO3C010882.2 Cucumis melo HOM05D004259 ORTHO05D005014 7.9e-99 364.4 354 55.6
Manes.08G078200 Manihot esculenta HOM05D004259 ORTHO05D005014 1.0e-98 364.0 358 55.6
CSS0003524 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 3.9e-98 362.1 357 54.9
Gohir.D11G345100 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.9e-98 362.1 356 55.6
Gorai.007G375500 Gossypium raimondii HOM05D004259 ORTHO05D005014 3.9e-98 362.1 356 55.6
Duzib128G0657 Durio zibethinus HOM05D004259 ORTHO05D005014 5.1e-98 361.7 355 55.8
QL02p005360 Quercus lobata HOM05D004259 ORTHO05D005014 6.7e-98 361.3 407 51.4
Gohir.A11G326200 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.5e-97 360.1 356 55.6
Thecc.05G042500 Theobroma cacao HOM05D004259 ORTHO05D005014 1.5e-97 360.1 354 55.9
TAR376G0692 Trochodendron aralioides HOM05D004259 ORTHO05D005014 2.5e-97 359.4 355 54.1
Cpa.g.sc973.4 Carica papaya HOM05D004259 ORTHO05D005014 3.3e-97 359.0 358 56.7
PSO675G0522 Papaver somniferum HOM05D004259 ORTHO05D005014 1.6e-96 356.7 356 54.8
Aqoxy7G01016 Aquilegia oxysepala HOM05D004259 ORTHO05D005014 2.8e-96 355.9 357 55.2
Migut.N02703 Erythranthe guttata HOM05D004259 ORTHO05D005014 4.8e-96 355.1 370 52.4
HanXRQChr04g0103531 Helianthus annuus HOM05D004259 ORTHO05D005014 2.4e-95 352.8 358 53.1
PSO339G6255 Papaver somniferum HOM05D004259 ORTHO05D005014 2.4e-95 352.8 356 54.2
CARHR132030 Cardamine hirsuta HOM05D004259 ORTHO05D005014 9.0e-95 350.9 357 53.2
AT2G37560 Arabidopsis thaliana HOM05D004259 ORTHO05D005014 1.5e-94 350.1 339 54.9
BraA05t19805Z Brassica rapa HOM05D004259 ORTHO05D005014 1.5e-94 350.1 357 52.7
PSO541G1765 Papaver somniferum HOM05D004259 ORTHO05D005014 1.5e-94 350.1 356 53.9
Ca_01811_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 2.0e-94 349.7 362 53.0
Ca_29610_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 2.0e-94 349.7 362 53.0
Carub.0004s1948 Capsella rubella HOM05D004259 ORTHO05D005014 2.6e-94 349.4 357 52.9
Lsat_1_v5_gn_1_20280 Lactuca sativa HOM05D004259 ORTHO05D005014 2.6e-94 349.4 355 52.7
BcaB02g09273 Brassica carinata HOM05D004259 ORTHO05D005014 3.4e-94 349.0 357 52.9
Thhalv10016846m.g Eutrema salsugineum HOM05D004259 ORTHO05D005014 5.9e-94 348.2 357 52.9
MSTRG.24327 Avicennia marina HOM05D004259 ORTHO05D005014 1.0e-93 347.4 370 52.2
A05p08400 Brassica napus HOM05D004259 ORTHO05D005014 1.3e-93 347.1 357 52.4
BolC4t22638H Brassica oleracea HOM05D004259 ORTHO05D005014 1.3e-93 347.1 357 52.7
C04p10400 Brassica napus HOM05D004259 ORTHO05D005014 1.7e-93 346.7 368 51.4
Medtr1g019770 Medicago truncatula HOM05D004259 ORTHO05D005014 2.2e-93 346.3 350 53.7
AL4G34050 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 2.9e-93 345.9 355 53.0
Psat6g012600 Pisum sativum HOM05D004259 ORTHO05D005014 3.8e-93 345.5 349 53.3
THA.LOC104806568 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 3.8e-93 345.5 358 52.5
BcaC02g11869 Brassica carinata HOM05D004259 ORTHO05D005014 5.0e-93 345.1 356 52.5
Nn1g05830 Nelumbo nucifera HOM05D004259 ORTHO05D005014 1.9e-92 343.2 355 53.0
Oeu018211.1 Olea europaea HOM05D004259 ORTHO05D005014 1.9e-92 343.2 382 51.6
TPR.G17553 Trifolium pratense HOM05D004259 ORTHO05D005014 1.9e-92 343.2 350 52.9
EL10Ac3g06655 Beta vulgaris HOM05D004259 ORTHO05D005014 2.5e-92 342.8 357 52.1
AUR62039303 Chenopodium quinoa HOM05D004259 ORTHO05D005014 3.2e-92 342.4 357 52.7
MBI02_g17334_MAGBIO Magnolia biondii HOM05D004259 ORTHO05D005014 9.4e-92 340.9 383 50.1
Peaxi162Scf00162g00029 Petunia axillaris HOM05D004259 ORTHO05D005014 1.2e-91 340.5 378 49.7
Sp4g19910 Schrenkiella parvula HOM05D004259 ORTHO05D005014 2.1e-91 339.7 357 51.8
VMungo0647G0522 Vigna mungo HOM05D004259 ORTHO05D005014 2.7e-91 339.3 353 52.7
Lj3C736T6 Lonicera japonica HOM05D004259 ORTHO05D005014 3.6e-91 339.0 367 52.0
ATR0100G023 Amborella trichopoda HOM05D004259 ORTHO05D005014 4.6e-91 338.6 352 52.0
Peaxi162Scf00929g00211 Petunia axillaris HOM05D004259 ORTHO05D005014 6.1e-91 338.2 378 50.0
AUR62022427 Chenopodium quinoa HOM05D004259 ORTHO05D005014 7.9e-91 337.8 357 51.8
Dinv39327 Davidia involucrata HOM05D004259 ORTHO05D005014 1.0e-90 337.4 314 56.4
Lj5g0003666 Lotus japonicus HOM05D004259 ORTHO05D005014 1.0e-90 337.4 355 51.8
Haze_17552 Corylus avellana HOM05D004259 ORTHO05D005014 2.3e-90 336.3 358 53.1
THA.LOC104809222 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 2.3e-90 336.3 360 51.4
MD15G1084600 Malus domestica HOM05D004259 ORTHO05D005014 3.9e-90 335.5 364 51.9
Glyma.14G082100 Glycine max HOM05D004259 ORTHO05D005014 5.1e-90 335.1 356 52.5
PGSC0003DMG400027003 Solanum tuberosum HOM05D004259 ORTHO05D005014 8.8e-90 334.3 368 50.0
Sopen06g029870 Solanum pennellii HOM05D004259 ORTHO05D005014 1.5e-89 333.6 368 50.0
Solyc06g073510.3 Solanum lycopersicum HOM05D004259 ORTHO05D005014 2.5e-89 332.8 368 49.7
Phvul.001G021100 Phaseolus vulgaris HOM05D004259 ORTHO05D005014 1.3e-88 330.5 355 51.5
CAN.G65.190 Capsicum annuum HOM05D004259 ORTHO05D005014 2.8e-88 329.3 363 50.7
PGR031G2227 Punica granatum HOM05D004259 ORTHO05D005014 2.8e-88 329.3 368 50.5
Lalb_Chr19g0129351 Lupinus albus HOM05D004259 ORTHO05D005014 8.2e-88 327.8 367 49.0
Eucgr.F00239 Eucalyptus grandis HOM05D004259 ORTHO05D005014 1.1e-87 327.4 355 51.0
Sabra11G0061200 Salix brachista HOM05D004259 ORTHO05D005014 6.9e-87 324.7 353 51.6
unitig_26.g10027 Utricularia gibba HOM05D004259 ORTHO05D005014 6.9e-87 324.7 368 48.9
Os03g0184700 Oryza sativa ssp. japonica HOM05D004259 ORTHO05D005014 9.1e-87 324.3 359 49.0
Sabra03G0064000 Salix brachista HOM05D004259 ORTHO05D005014 1.5e-86 323.6 351 51.9
ECA247G2793 Erigeron canadensis HOM05D004259 ORTHO05D005014 2.0e-86 323.2 309 54.0
Zm00001eb248940 Zea mays HOM05D004259 ORTHO05D005014 2.0e-86 323.2 360 49.4
Nitab4.5_0000111g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 7.7e-86 321.2 379 47.5
COL.COLO4_14836 Corchorus olitorius HOM05D004259 ORTHO05D005014 5.0e-85 318.5 281 60.1
SalBow2G1152 Salvia bowleyana HOM05D004259 ORTHO05D005014 5.0e-85 318.5 381 47.8
CDE10G1325 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 6.5e-85 318.2 361 48.8
Nitab4.5_0002664g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.4e-84 317.0 401 46.1
CSS0037728 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 1.9e-84 316.6 329 53.5
SalBow2G2463 Salvia bowleyana HOM05D004259 ORTHO05D005014 4.2e-84 315.5 381 47.2
SalBow2G2012 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.2e-83 313.9 381 47.0
Actinidia29866 Actinidia chinensis HOM05D004259 ORTHO05D005014 8.8e-82 307.8 268 58.6
Nitab4.5_0002045g0130 Nicotiana tabacum HOM05D004259 ORTHO05D005014 8.8e-82 307.8 368 47.6
Rhsim10G0028600 Rhododendron simsii HOM05D004259 ORTHO05D005014 1.1e-81 307.4 358 50.0
arahy.Tifrunner.gnm1.ann1.1PWX74 Arachis hypogaea HOM05D004259 ORTHO05D005014 1.7e-80 303.5 357 49.6
arahy.Tifrunner.gnm1.ann1.63NC9C Arachis hypogaea HOM05D004259 ORTHO05D005014 1.7e-80 303.5 357 49.6
Peaxi162Scf00003g02311 Petunia axillaris HOM05D004259 ORTHO05D005014 2.8e-80 302.8 389 45.2
TWI53G0519 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 8.2e-80 301.2 358 49.4
Glyma.17G243200 Glycine max HOM05D004259 ORTHO05D005014 1.4e-79 300.4 298 53.0
Sc07g0003460 Simmondsia chinensis HOM05D004259 ORTHO05D005014 1.2e-75 287.3 309 51.5
SalBow3G4106 Salvia bowleyana HOM05D004259 ORTHO05D005014 2.3e-74 283.1 356 46.3
Rhsim07G0229700 Rhododendron simsii HOM05D004259 ORTHO05D005014 3.9e-74 282.3 310 50.6
SGA_v2.0_scaffold204G41641 Striga asiatica HOM05D004259 ORTHO05D005014 5.2e-74 282.0 368 45.4
Nitab4.5_0004918g0050 Nicotiana tabacum HOM05D004259 ORTHO05D005014 6.7e-74 281.6 345 46.1
Cc10_g04310 Coffea canephora HOM05D004259 ORTHO05D005014 4.4e-73 278.9 370 44.6
Haze_17543 Corylus avellana HOM05D004259 ORTHO05D005014 1.3e-72 277.3 312 50.3
Prupe.1G438300 Prunus persica HOM05D004259 ORTHO05D005014 1.4e-71 273.9 288 54.5
SEGI_21568 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 1.1e-68 264.2 277 49.1
GSVIVG01009522001 Vitis vinifera HOM05D004259 ORTHO05D005014 1.9e-68 263.5 308 49.4
Hma1.2p1_0718F.1_g208420 Hydrangea macrophylla HOM05D004259 ORTHO05D005014 1.0e-66 257.7 294 50.0
SHI12655 Sapria himalayana HOM05D004259 ORTHO05D005014 1.0e-66 257.7 340 43.5
Pp3c18_14740 Physcomitrium patens HOM05D004259 ORTHO05D005014 7.5e-65 251.5 341 40.8
HPP92_027219 Vanilla planifolia HOM05D004259 ORTHO05D005014 1.2e-62 244.2 152 72.4
AagrBONN_evm.TU.Sc2ySwM_344.5209 Anthoceros agrestis HOM05D004259 ORTHO05D005014 2.0e-62 243.4 325 40.6
Mapoly0106s0035 Marchantia polymorpha HOM05D004259 ORTHO05D005014 4.5e-62 242.3 306 42.5
SMO147G0302 Selaginella moellendorffii HOM05D004259 ORTHO05D005014 6.5e-61 238.4 327 40.4
CBR_g6665 Chara braunii HOM05D004259 ORTHO05D005014 6.1e-59 231.9 340 38.8
Ah.05g168820 Amaranthus hybridus HOM05D001625 ORTHO05D005014 5.2e-58 228.8 291 46.0
SalBow2G2610 Salvia bowleyana HOM05D004259 ORTHO05D005014 6.8e-58 228.4 381 39.9
SalBow2G0695 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.7e-53 213.8 279 45.9
CDE10G0377 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 5.5e-52 208.8 135 71.1
vmacro04457 Vaccinium macrocarpon HOM05D004259 ORTHO05D005014 4.9e-48 195.7 298 43.3
Rhsim10G0028100 Rhododendron simsii HOM05D004259 ORTHO05D005014 6.6e-45 185.3 299 41.1
TWI53G0792 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 1.2e-43 181.0 247 44.9
MCO16G222 Micromonas commoda HOM05D004259 ORTHO05D005014 1.2e-38 164.5 275 34.5
Gohir.D10G137766 Gossypium hirsutum HOM05D004259 ORTHO05D005014 4.3e-36 156.0 137 56.2
Aa31LG5G22990 Aethionema arabicum HOM05D004259 ORTHO05D005014 4.9e-32 142.5 138 53.6
PRCOL_00004897 Prasinoderma coloniale HOM05D004259 ORTHO05D005014 1.8e-26 124.0 184 38.0
Cre03.g199400 Chlamydomonas reinhardtii HOM05D004259 ORTHO05D005014 1.9e-23 114.0 166 41.0
Nitab4.5_0000017g0120 Nicotiana tabacum HOM05D004259 ORTHO05D005014 3.0e-21 106.7 166 38.0
HPP92_027220 Vanilla planifolia HOM05D004259 ORTHO05D005014 1.1e-20 104.8 132 48.5
AL4G34080 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 6.4e-16 89.0 96 54.2
Gorai.005G118700 Gossypium raimondii HOM05D004259 ORTHO05D005014 7.1e-15 85.5 72 62.5
Gohir.D02G104501 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.6e-14 84.3 72 61.1
Cc00_g16720 Coffea canephora HOM05D004259 ORTHO05D005014 2.3e-13 80.5 122 42.6
Gohir.D03G074850 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.6e-11 73.2 67 58.2
Gohir.D12G080700 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.6e-11 73.2 67 58.2
Gorai.011G277900 Gossypium raimondii HOM05D004259 ORTHO05D005014 3.6e-11 73.2 67 58.2
Gohir.D01G124400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.4e-10 71.2 66 57.6
Gohir.D10G134400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.4e-10 71.2 67 55.2
Gorai.011G153000 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.8e-10 70.9 90 45.6
Gohir.D02G123750 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.1e-10 70.1 66 56.1
Gorai.005G130400 Gossypium raimondii HOM05D004259 ORTHO05D005014 3.1e-10 70.1 78 48.7
Gorai.008G056700 Gossypium raimondii HOM05D004259 ORTHO05D005014 3.1e-10 70.1 67 56.7
Gorai.012G099900 Gossypium raimondii HOM05D004259 ORTHO05D005014 3.1e-10 70.1 69 52.2
Gorai.004G133100 Gossypium raimondii HOM05D004259 ORTHO05D005014 4.0e-10 69.7 78 48.7
Gohir.D09G120150 Gossypium hirsutum HOM05D004259 ORTHO05D005014 5.3e-10 69.3 66 56.1
Cc06_g20720 Coffea canephora HOM05D004259 ORTHO05D005014 6.9e-10 68.9 101 42.6
Gohir.D04G089650 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.2e-09 68.2 69 52.2
EL10Ac4g08135 Beta vulgaris HOM05D004259 ORTHO05D005014 1.5e-09 67.8 38 78.9
Gorai.006G043100 Gossypium raimondii HOM05D004259 ORTHO05D005014 3.4e-09 66.6 81 46.9
Aa31sc112G60 Aethionema arabicum HOM05D004259 ORTHO05D005014 5.8e-09 65.9 67 50.7
Actinidia38053 Actinidia chinensis HOM05D004259 ORTHO05D005014 3.8e-08 63.2 92 43.5
SEGI_22221 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 1.6e-06 57.8 110 36.4


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