Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0307161 Rosa chinensis HOM05D000561 ORTHO05D008162 2.4e-162 575.5 293 100.0
FAN27G1876 Fragaria x ananassa HOM05D000561 ORTHO05D008162 2.5e-132 475.7 305 84.6
FvH4_2g34880 Fragaria vesca HOM05D000561 ORTHO05D008162 2.2e-131 472.6 279 90.3
Prupe.1G440800 Prunus persica HOM05D000561 ORTHO05D008162 4.2e-127 458.4 301 81.1
MD08G1106500 Malus domestica HOM05D000561 ORTHO05D008162 1.0e-125 453.8 297 80.1
MD15G1087100 Malus domestica HOM05D000561 ORTHO05D008162 5.1e-125 451.4 299 79.3
Atru.chr13.629 Acer truncatum HOM05D000561 ORTHO05D008162 5.5e-119 431.4 298 75.5
Atru.chr13.633 Acer truncatum HOM05D000561 ORTHO05D008162 5.5e-119 431.4 298 75.5
FAN20G2490 Fragaria x ananassa HOM05D000561 ORTHO05D008162 8.0e-118 427.6 370 67.8
Potri.014G034700 Populus trichocarpa HOM05D000561 ORTHO05D008162 4.1e-114 415.2 286 74.8
Ciclev10001965m.g Citrus clementina HOM05D000561 ORTHO05D008162 2.2e-112 409.5 306 72.2
GSVIVG01009559001 Vitis vinifera HOM05D000561 ORTHO05D008162 5.0e-112 408.3 291 75.3
TWI56G0230 Tripterygium wilfordii HOM05D000561 ORTHO05D008162 6.5e-112 407.9 283 73.9
Dinv39338 Davidia involucrata HOM05D000561 ORTHO05D008162 1.2e-110 403.7 294 72.8
Duzib116G0222 Durio zibethinus HOM05D000561 ORTHO05D008162 1.2e-110 403.7 297 70.7
Gohir.D05G203500 Gossypium hirsutum HOM05D000561 ORTHO05D008162 1.6e-110 403.3 302 69.5
CiPaw.16G047800 Carya illinoinensis HOM05D000561 ORTHO05D008162 2.7e-110 402.5 302 71.9
Hma1.2p1_0260F.1_g104740 Hydrangea macrophylla HOM05D000561 ORTHO05D008162 6.1e-110 401.4 291 71.1
QL02p005893 Quercus lobata HOM05D000561 ORTHO05D008162 1.4e-109 400.2 275 77.5
Actinidia22609 Actinidia chinensis HOM05D000561 ORTHO05D008162 4.0e-109 398.7 298 71.1
TAR628G0509 Trochodendron aralioides HOM05D000561 ORTHO05D008162 2.0e-108 396.4 286 73.1
Gorai.009G209500 Gossypium raimondii HOM05D000561 ORTHO05D008162 4.4e-108 395.2 303 68.6
Sabra14G0024600 Salix brachista HOM05D000561 ORTHO05D008162 7.5e-108 394.4 275 76.0
Gohir.A05G200200 Gossypium hirsutum HOM05D000561 ORTHO05D008162 9.7e-108 394.0 302 68.9
Duzib093G1567 Durio zibethinus HOM05D000561 ORTHO05D008162 1.3e-107 393.7 300 68.3
TAR625G0340 Trochodendron aralioides HOM05D000561 ORTHO05D008162 3.7e-107 392.1 288 72.2
Nn5g30201 Nelumbo nucifera HOM05D000561 ORTHO05D000514 6.3e-107 391.3 265 76.2
Manes.05G170800 Manihot esculenta HOM05D000561 ORTHO05D008162 1.1e-106 390.6 303 70.3
CSS0036187 Camellia sinensis var. sinensis HOM05D000561 ORTHO05D008162 3.1e-106 389.0 247 80.6
Sed0001510 Sechium edule HOM05D000561 ORTHO05D008162 1.2e-105 387.1 295 67.5
Cc10_g03990 Coffea canephora HOM05D000561 ORTHO05D008162 1.6e-105 386.7 296 68.6
Haze_17567 Corylus avellana HOM05D000561 ORTHO05D008162 1.6e-105 386.7 289 71.3
Lj1g0015016 Lotus japonicus HOM05D000561 ORTHO05D008162 1.6e-105 386.7 300 68.7
vmacro21557 Vaccinium macrocarpon HOM05D000561 ORTHO05D008162 1.6e-105 386.7 287 71.1
Rhsim06G0046600 Rhododendron simsii HOM05D000561 ORTHO05D008162 1.3e-104 383.6 290 69.7
MELO3C010892.2 Cucumis melo HOM05D000561 ORTHO05D008162 3.2e-103 379.0 307 65.8
PSO675G5921 Papaver somniferum HOM05D000561 ORTHO05D008162 4.2e-103 378.6 267 72.3
PSO541G5839 Papaver somniferum HOM05D000561 ORTHO05D008162 1.2e-102 377.1 265 71.7
Lalb_Chr08g0245641 Lupinus albus HOM05D000561 ORTHO05D008162 2.7e-102 375.9 303 67.7
CsaV3_2G028140 Cucumis sativus L. HOM05D000561 ORTHO05D008162 6.1e-102 374.8 300 67.0
ClCG08G015630 Citrullus lanatus HOM05D000561 ORTHO05D008162 1.0e-101 374.0 298 66.8
arahy.Tifrunner.gnm1.ann1.YYC1CT Arachis hypogaea HOM05D000561 ORTHO05D008162 1.4e-101 373.6 276 71.0
Nitab4.5_0000068g0440 Nicotiana tabacum HOM05D000561 ORTHO05D008162 1.8e-101 373.2 288 66.7
Nitab4.5_0005549g0040 Nicotiana tabacum HOM05D000561 ORTHO05D008162 1.8e-101 373.2 258 72.1
Thecc.08G013400 Theobroma cacao HOM05D000561 ORTHO05D008162 2.3e-101 372.9 296 68.2
Phvul.009G063100 Phaseolus vulgaris HOM05D000561 ORTHO05D008162 5.2e-101 371.7 299 67.6
Glyma.06G037300 Glycine max HOM05D000561 ORTHO05D008162 6.8e-101 371.3 299 67.6
Manes.18G034000 Manihot esculenta HOM05D000561 ORTHO05D008162 6.8e-101 371.3 289 69.6
Medtr3g101350 Medicago truncatula HOM05D000561 ORTHO05D008162 8.8e-101 370.9 306 65.0
MBI06_g08185_MAGBIO Magnolia biondii HOM05D000561 ORTHO05D008162 1.2e-100 370.5 319 62.1
Migut.C00604 Erythranthe guttata HOM05D000561 ORTHO05D008162 1.5e-100 370.2 296 65.2
MSTRG.1332 Avicennia marina HOM05D000561 ORTHO05D008162 2.0e-100 369.8 280 66.4
CAN.G371.47 Capsicum annuum HOM05D000561 ORTHO05D008162 3.4e-100 369.0 256 69.5
TPR.G10521 Trifolium pratense HOM05D000561 ORTHO05D008162 7.5e-100 367.9 254 73.2
COL.COLO4_26457 Corchorus olitorius HOM05D000561 ORTHO05D008162 4.8e-99 365.2 232 76.7
HanXRQChr02g0038741 Helianthus annuus HOM05D000561 ORTHO05D008162 4.8e-99 365.2 275 66.2
Psat5g044440 Pisum sativum HOM05D000561 ORTHO05D008162 4.8e-99 365.2 278 67.3
Sabra02G0100300 Salix brachista HOM05D000561 ORTHO05D008162 4.8e-99 365.2 263 71.5
Sp4g07760 Schrenkiella parvula HOM05D000561 ORTHO05D008162 1.8e-98 363.2 303 64.0
CARHR050650 Cardamine hirsuta HOM05D000561 ORTHO05D008162 7.0e-98 361.3 287 63.4
DCAR_019467 Daucus carota HOM05D000561 ORTHO05D008162 7.0e-98 361.3 290 64.8
Sopen04g032930 Solanum pennellii HOM05D000561 ORTHO05D008162 7.0e-98 361.3 259 68.0
AL4G19400 Arabidopsis lyrata HOM05D000561 ORTHO05D008162 2.0e-97 359.8 274 65.7
Solyc04g079320.4 Solanum lycopersicum HOM05D000561 ORTHO05D008162 2.7e-97 359.4 292 63.7
SalBow7G2378 Salvia bowleyana HOM05D000561 ORTHO05D008162 1.7e-96 356.7 338 56.8
CDE06G2652 Ceratophyllum demersum HOM05D000561 ORTHO05D008162 2.3e-96 356.3 292 63.7
HanXRQChr09g0268001 Helianthus annuus HOM05D000561 ORTHO05D008162 2.3e-96 356.3 282 65.2
Carub.0003s2738 Capsella rubella HOM05D000561 ORTHO05D008162 6.6e-96 354.8 250 70.4
ECA232G0584 Erigeron canadensis HOM05D000561 ORTHO05D008162 1.1e-95 354.0 275 65.8
BolC8t51383H Brassica oleracea HOM05D000561 ORTHO05D008162 1.5e-95 353.6 290 65.2
Ca_15966_v3 Cicer arietinum L. HOM05D000561 ORTHO05D008162 1.5e-95 353.6 244 75.0
AT2G26540 Arabidopsis thaliana HOM05D000561 ORTHO05D008162 2.5e-95 352.8 297 62.6
A09p55150 Brassica napus HOM05D000561 ORTHO05D008162 2.5e-95 352.8 267 66.7
Aa31LG10G9880 Aethionema arabicum HOM05D000561 ORTHO05D008162 3.3e-95 352.4 262 67.9
THA.LOC104803685 Tarenaya hassleriana HOM05D000561 ORTHO05D008162 3.3e-95 352.4 250 68.4
C08p38080 Brassica napus HOM05D000561 ORTHO05D008162 9.5e-95 350.9 288 63.5
BraA09t40923Z Brassica rapa HOM05D000561 ORTHO05D008162 3.6e-94 349.0 267 66.3
PGR031G3300 Punica granatum HOM05D000561 ORTHO05D008162 1.8e-93 346.7 258 70.9
Aqoxy6G01386 Aquilegia oxysepala HOM05D000561 ORTHO05D008162 2.3e-93 346.3 243 71.6
Eucgr.F02370 Eucalyptus grandis HOM05D000561 ORTHO05D008162 8.9e-93 344.4 232 75.0
Lsat_1_v5_gn_1_20480 Lactuca sativa HOM05D000561 ORTHO05D008162 1.5e-92 343.6 275 62.5
BcaB08g35302 Brassica carinata HOM05D000561 ORTHO05D008162 4.4e-92 342.0 294 61.2
Zm00001eb006450 Zea mays HOM05D000561 ORTHO05D008162 5.7e-92 341.7 245 67.3
Os03g0186100 Oryza sativa ssp. japonica HOM05D000561 ORTHO05D008162 7.5e-92 341.3 252 66.3
Peaxi162Scf00566g00219 Petunia axillaris HOM05D000561 ORTHO05D008162 1.7e-91 340.1 239 71.5
SGA_v2.0_scaffold71G24043 Striga asiatica HOM05D000561 ORTHO05D008162 1.7e-91 340.1 256 67.6
EL10Ac1g01805 Beta vulgaris HOM05D000561 ORTHO05D008162 6.3e-91 338.2 285 63.5
BcaC07g40815 Brassica carinata HOM05D000561 ORTHO05D008162 8.3e-91 337.8 293 62.1
Lsat_1_v5_gn_4_124200 Lactuca sativa HOM05D000561 ORTHO05D008162 2.4e-90 336.3 269 63.6
HPP92_011186 Vanilla planifolia HOM05D000561 ORTHO05D008162 1.6e-89 333.6 285 60.7
Thhalv10001252m.g Eutrema salsugineum HOM05D000561 ORTHO05D008162 1.7e-88 330.1 294 61.9
Migut.O00512 Erythranthe guttata HOM05D000561 ORTHO05D008162 8.6e-88 327.8 295 56.9
Hund26617 Selenicereus undatus HOM05D000561 ORTHO05D008162 1.7e-83 313.5 415 45.5
ATR0087G004 Amborella trichopoda HOM05D000561 ORTHO05D008162 1.1e-82 310.8 224 67.9
VMungo1309G1588 Vigna mungo HOM05D000561 ORTHO05D008162 9.2e-82 307.8 232 68.1
Cpa.g.sc64.2 Carica papaya HOM05D000561 ORTHO05D008162 9.5e-79 297.7 187 79.7
Lj4A51T47 Lonicera japonica HOM05D000561 ORTHO05D008162 2.8e-78 296.2 190 77.9
Glyma.04G037000 Glycine max HOM05D000561 ORTHO05D008162 6.4e-75 285.0 215 68.4
Ah.06g192790 Amaranthus hybridus HOM05D000561 ORTHO05D008162 3.5e-73 279.3 306 52.6
Pp3c9_18350 Physcomitrium patens HOM05D000561 ORTHO05D008162 6.0e-73 278.5 253 53.4
AagrBONN_evm.TU.Sc2ySwM_228.1283 Anthoceros agrestis HOM05D000561 ORTHO05D008162 1.3e-72 277.3 246 56.1
ECA247G1201 Erigeron canadensis HOM05D000561 ORTHO05D000514 6.6e-72 275.0 191 69.6
AUR62022458 Chenopodium quinoa HOM05D000561 ORTHO05D008162 8.6e-72 274.6 239 62.3
SHI08313 Sapria himalayana HOM05D000561 ORTHO05D008162 4.3e-71 272.3 249 58.6
Mapoly0101s0072 Marchantia polymorpha HOM05D000561 ORTHO05D008162 1.8e-69 266.9 256 53.1
SEGI_40608 Sequoiadendron giganteum HOM05D000561 ORTHO05D008162 5.2e-69 265.4 213 61.0
Carub.0004s0671 Capsella rubella HOM05D000561 ORTHO05D008162 1.4e-66 257.3 279 53.0
AUR62040067 Chenopodium quinoa HOM05D000561 ORTHO05D008162 4.6e-65 252.3 287 50.9
SMO367G0032 Selaginella moellendorffii HOM05D000561 ORTHO05D008162 5.8e-60 235.3 244 50.4
Sc26g0003980 Simmondsia chinensis HOM05D000561 ORTHO05D008162 1.9e-58 230.3 175 69.7
CBR_g12178 Chara braunii HOM05D000561 ORTHO05D008162 4.2e-58 229.2 276 44.9
Cre09.g409100 Chlamydomonas reinhardtii HOM05D000561 ORTHO05D008162 3.3e-55 219.5 258 46.1
CDE10G0258 Ceratophyllum demersum HOM05D000561 ORTHO05D008162 9.6e-55 218.0 207 57.5
arahy.Tifrunner.gnm1.ann1.96H4RR Arachis hypogaea HOM05D000561 ORTHO05D008162 5.8e-52 208.8 167 65.9
Migut.N02692 Erythranthe guttata HOM05D000561 ORTHO05D008162 3.8e-51 206.1 159 63.5
unitig_32.g11128 Utricularia gibba HOM05D000561 ORTHO05D008162 3.2e-50 203.0 140 68.6
MCO15G161 Micromonas commoda HOM05D000561 ORTHO05D008162 1.6e-49 200.7 247 44.9
PRCOL_00005348 Prasinoderma coloniale HOM05D000561 ORTHO05D008162 4.0e-45 186.0 248 43.1
SGA_v2.0_scaffold217G42442 Striga asiatica HOM05D000561 ORTHO05D008162 8.7e-40 168.3 122 67.2
Lsat_1_v5_gn_2_45600 Lactuca sativa HOM05D000561 ORTHO05D008162 9.6e-39 164.9 203 45.8
Lsat_1_v5_gn_5_145360 Lactuca sativa HOM05D000561 ORTHO05D008162 3.0e-32 143.3 163 49.7
SGA_v2.0_scaffold217G42441 Striga asiatica HOM05D000561 ORTHO05D008162 1.3e-24 117.9 79 67.1
Lsat_1_v5_gn_5_39421 Lactuca sativa HOM05D000487 ORTHO05D048384 1.3e-19 101.3 79 60.8
PGSC0003DMG400030254 Solanum tuberosum HOM05D000561 ORTHO05D008162 9.7e-07 58.5 46 69.6


User provided reference genes

Program Settings