Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0306971 Rosa chinensis HOM05D002914 ORTHO05D003196 2.6e-54 215.3 121 100.0
FAN15G3578 Fragaria x ananassa HOM05D002914 ORTHO05D003196 1.8e-44 182.6 122 80.3
FAN20G2785 Fragaria x ananassa HOM05D002914 ORTHO05D003196 5.4e-44 181.0 122 79.5
FvH4_2g35030 Fragaria vesca HOM05D002914 ORTHO05D003196 1.6e-43 179.5 122 78.7
FAN27G2590 Fragaria x ananassa HOM05D002914 ORTHO05D003196 2.2e-42 175.6 122 77.9
ClCG08G015580 Citrullus lanatus HOM05D002914 ORTHO05D003196 1.1e-17 93.6 103 56.3
TWI36G0119 Tripterygium wilfordii HOM05D002914 ORTHO05D003196 1.1e-17 93.6 102 55.9
MELO3C010895.2 Cucumis melo HOM05D002914 ORTHO05D003196 1.9e-17 92.8 70 70.0
CsaV3_2G028190 Cucumis sativus L. HOM05D002914 ORTHO05D003196 2.5e-17 92.4 102 54.9
Lj1g0002449 Lotus japonicus HOM05D002914 ORTHO05D003196 7.3e-17 90.9 102 47.1
Sed0019897 Sechium edule HOM05D002914 ORTHO05D003196 7.3e-17 90.9 104 51.9
Atru.chr13.614 Acer truncatum HOM05D002914 ORTHO05D003196 9.5e-17 90.5 89 52.8
Potri.014G035400 Populus trichocarpa HOM05D002914 ORTHO05D003196 2.8e-16 89.0 95 50.5
CANSAT25G0897 Cannabis sativa HOM05D002914 ORTHO05D003196 6.2e-16 87.8 97 51.5
Psat5g044840 Pisum sativum HOM05D002914 ORTHO05D003196 2.3e-15 85.9 96 47.9
arahy.Tifrunner.gnm1.ann1.HH3ECB Arachis hypogaea HOM05D002914 ORTHO05D003196 3.1e-15 85.5 106 46.2
Prupe.1G441900 Prunus persica HOM05D002914 ORTHO05D003196 4.0e-15 85.1 119 52.1
Sed0007891 Sechium edule HOM05D002914 ORTHO05D003196 6.8e-15 84.3 114 57.9
Glyma.06G036600 Glycine max HOM05D002914 ORTHO05D003196 8.9e-15 84.0 121 41.3
ECA236G0292 Erigeron canadensis HOM05D002914 ORTHO05D003196 1.5e-14 83.2 85 47.1
Lalb_Chr23g0266911 Lupinus albus HOM05D002914 ORTHO05D003196 1.5e-14 83.2 121 43.0
Manes.05G170100 Manihot esculenta HOM05D002914 ORTHO05D003196 1.5e-14 83.2 90 60.0
Lalb_Chr16g0384551 Lupinus albus HOM05D002914 ORTHO05D003196 2.0e-14 82.8 122 41.0
Thecc.08G014700 Theobroma cacao HOM05D002914 ORTHO05D003196 2.0e-14 82.8 114 46.5
TPR.G40737 Trifolium pratense HOM05D002914 ORTHO05D003196 2.0e-14 82.8 120 42.5
CDE01G0545 Ceratophyllum demersum HOM05D000767 ORTHO05D003196 3.4e-14 82.0 90 45.6
Ca_15973_v3 Cicer arietinum L. HOM05D002914 ORTHO05D003196 3.4e-14 82.0 111 45.0
Glyma.04G036500 Glycine max HOM05D002914 ORTHO05D003196 4.4e-14 81.6 118 44.1
Dinv42126 Davidia involucrata HOM05D002914 ORTHO05D003196 5.8e-14 81.3 82 47.6
VMungo0251G3532 Vigna mungo HOM05D002914 ORTHO05D003196 9.8e-14 80.5 88 54.5
Ciclev10002811m.g Citrus clementina HOM05D002914 ORTHO05D003196 1.3e-13 80.1 101 52.5
Medtr3g101240 Medicago truncatula HOM05D002914 ORTHO05D003196 1.3e-13 80.1 93 49.5
Medtr4g086780 Medicago truncatula HOM05D002914 ORTHO05D003196 1.3e-13 80.1 76 51.3
Nitab4.5_0002673g0030 Nicotiana tabacum HOM05D002914 ORTHO05D003196 2.2e-13 79.3 116 40.5
Nitab4.5_0000876g0190 Nicotiana tabacum HOM05D002914 ORTHO05D003196 2.9e-13 79.0 116 39.7
PGR083G2546 Punica granatum HOM05D002914 ORTHO05D003196 6.4e-13 77.8 126 40.5
AL4G19370 Arabidopsis lyrata HOM05D002914 ORTHO05D003196 8.3e-13 77.4 83 45.8
CDE02G0277 Ceratophyllum demersum HOM05D002914 ORTHO05D003196 8.3e-13 77.4 99 43.4
Oeu013680.1 Olea europaea HOM05D002914 ORTHO05D003196 8.3e-13 77.4 104 43.3
QL02p006168 Quercus lobata HOM05D002914 ORTHO05D003196 8.3e-13 77.4 116 40.5
Nitab4.5_0002462g0040 Nicotiana tabacum HOM05D002914 ORTHO05D003196 1.1e-12 77.0 82 52.4
Oeu003691.1 Olea europaea HOM05D002914 ORTHO05D003196 1.4e-12 76.6 83 44.6
Oeu010582.1 Olea europaea HOM05D002914 ORTHO05D003196 1.4e-12 76.6 70 51.4
Rhsim05G0080600 Rhododendron simsii HOM05D002914 ORTHO05D003196 1.4e-12 76.6 67 50.7
Ah.05g168910 Amaranthus hybridus HOM05D002914 ORTHO05D003196 1.9e-12 76.3 80 47.5
HanXRQChr04g0128331 Helianthus annuus HOM05D002914 ORTHO05D003196 1.9e-12 76.3 122 36.1
Lalb_Chr09g0328151 Lupinus albus HOM05D002914 ORTHO05D003196 1.9e-12 76.3 64 60.9
Nitab4.5_0000876g0210 Nicotiana tabacum HOM05D002914 ORTHO05D003196 1.9e-12 76.3 93 41.9
HanXRQChr16g0509571 Helianthus annuus HOM05D002914 ORTHO05D003196 2.4e-12 75.9 88 43.2
Hma1.2p1_0584F.1_g183120 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 2.4e-12 75.9 81 46.9
Sp4g07710 Schrenkiella parvula HOM05D002914 ORTHO05D003196 2.4e-12 75.9 99 44.4
Aa31LG5G9350 Aethionema arabicum HOM05D002914 ORTHO05D003196 3.2e-12 75.5 90 44.4
Sc15g0006440 Simmondsia chinensis HOM05D002914 ORTHO05D003196 3.2e-12 75.5 63 52.4
Oeu003693.1 Olea europaea HOM05D002914 ORTHO05D003196 4.1e-12 75.1 64 54.7
Glyma.07G210000 Glycine max HOM05D002914 ORTHO05D003196 5.4e-12 74.7 92 50.0
RcHm_v2.0_Chr6g0259071 Rosa chinensis HOM05D002914 ORTHO05D003196 5.4e-12 74.7 77 46.8
Migut.B00310 Erythranthe guttata HOM05D002914 ORTHO05D003196 7.1e-12 74.3 82 46.3
Solyc01g108330.2 Solanum lycopersicum HOM05D002914 ORTHO05D003196 7.1e-12 74.3 108 48.1
Sopen01g050550 Solanum pennellii HOM05D002914 ORTHO05D003196 7.1e-12 74.3 108 48.1
DCAR_022064 Daucus carota HOM05D002914 ORTHO05D003196 9.2e-12 73.9 84 41.7
Lj5P206T48 Lonicera japonica HOM05D002914 ORTHO05D003196 9.2e-12 73.9 93 45.2
Ah.01g020080 Amaranthus hybridus HOM05D002914 ORTHO05D003196 1.6e-11 73.2 76 59.2
EL10Ac9g21822 Beta vulgaris HOM05D002914 ORTHO05D003196 1.6e-11 73.2 63 49.2
SGA_v2.0_scaffold58G20610 Striga asiatica HOM05D002914 ORTHO05D003196 1.6e-11 73.2 83 44.6
AT2G26520 Arabidopsis thaliana HOM05D002914 ORTHO05D003196 2.1e-11 72.8 103 40.8
TAR376G1047 Trochodendron aralioides HOM05D002914 ORTHO05D003196 2.1e-11 72.8 63 60.3
Duzib052G1256 Durio zibethinus HOM05D002914 ORTHO05D003196 2.7e-11 72.4 109 40.4
Peaxi162Scf00016g00161 Petunia axillaris HOM05D002914 ORTHO05D003196 2.7e-11 72.4 57 63.2
PGSC0003DMG400025804 Solanum tuberosum HOM05D002914 ORTHO05D003196 2.7e-11 72.4 108 46.3
Cpa.g.sc376.2 Carica papaya HOM05D002914 ORTHO05D003196 3.5e-11 72.0 105 42.9
Hma1.2p1_1589F.1_g292395 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 3.5e-11 72.0 92 43.5
Hma1.2p1_2598F.1_g325150 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 3.5e-11 72.0 92 43.5
Aqoxy5G01394 Aquilegia oxysepala HOM05D002914 ORTHO05D003196 4.6e-11 71.6 94 42.6
Cfa005429 Carpinus fangiana HOM05D002914 ORTHO05D003196 4.6e-11 71.6 88 51.1
Aqoxy6G00878 Aquilegia oxysepala HOM05D002914 ORTHO05D003196 1.3e-10 70.1 83 47.0
Carub.0004s0669 Capsella rubella HOM05D002914 ORTHO05D003196 1.3e-10 70.1 93 44.1
Eucgr.I01175 Eucalyptus grandis HOM05D002914 ORTHO05D003196 1.3e-10 70.1 99 45.5
Gohir.D06G013700 Gossypium hirsutum HOM05D002914 ORTHO05D003196 1.7e-10 69.7 62 50.0
Gorai.010G016300 Gossypium raimondii HOM05D002914 ORTHO05D003196 1.7e-10 69.7 62 50.0
Phvul.003G294100 Phaseolus vulgaris HOM05D002914 ORTHO05D003196 1.7e-10 69.7 96 46.9
Duzib248G0090 Durio zibethinus HOM05D002914 ORTHO05D003196 2.3e-10 69.3 87 42.5
Gohir.A06G015600 Gossypium hirsutum HOM05D002914 ORTHO05D003196 2.3e-10 69.3 57 52.6
Potri.004G144400 Populus trichocarpa HOM05D002914 ORTHO05D003196 2.3e-10 69.3 63 55.6
CiPaw.05G054900 Carya illinoinensis HOM05D002914 ORTHO05D003196 3.0e-10 68.9 48 60.4
Ca_18662_v3 Cicer arietinum L. HOM05D002914 ORTHO05D003196 3.0e-10 68.9 63 61.9
THA.LOC104803788 Tarenaya hassleriana HOM05D002914 ORTHO05D003196 3.0e-10 68.9 117 36.8
arahy.Tifrunner.gnm1.ann1.2E3RSG Arachis hypogaea HOM05D002914 ORTHO05D003196 6.6e-10 67.8 105 46.7
arahy.Tifrunner.gnm1.ann1.ZME7HS Arachis hypogaea HOM05D002914 ORTHO05D003196 8.6e-10 67.4 98 46.9
COL.COLO4_26446 Corchorus olitorius HOM05D002914 ORTHO05D003196 1.1e-09 67.0 67 53.7
Atru.chr5.2809 Acer truncatum HOM05D002914 ORTHO05D003196 1.5e-09 66.6 109 36.7
Gorai.005G240100 Gossypium raimondii HOM05D002914 ORTHO05D003196 1.5e-09 66.6 100 48.0
Thecc.02G096100 Theobroma cacao HOM05D002914 ORTHO05D003196 1.5e-09 66.6 57 50.9
Potri.009G106300 Populus trichocarpa HOM05D002914 ORTHO05D003196 1.9e-09 66.2 69 49.3
Gohir.A03G191200 Gossypium hirsutum HOM05D002914 ORTHO05D003196 2.5e-09 65.9 100 41.0
TAR628G0868 Trochodendron aralioides HOM05D002914 ORTHO05D003196 3.3e-09 65.5 92 48.9
Nn5g30169 Nelumbo nucifera HOM05D002914 ORTHO05D003196 4.3e-09 65.1 45 62.2
QL11p038331 Quercus lobata HOM05D002914 ORTHO05D003196 4.3e-09 65.1 35 71.4
TAR625G1140 Trochodendron aralioides HOM05D002914 ORTHO05D003196 4.3e-09 65.1 62 45.2
PSO675G1122 Papaver somniferum HOM05D000003 ORTHO05D001026 7.3e-09 64.3 55 50.9
CiPaw.06G141400 Carya illinoinensis HOM05D002914 ORTHO05D003196 9.5e-09 63.9 49 61.2
HPP92_003444 Vanilla planifolia HOM05D002914 ORTHO05D003196 9.5e-09 63.9 69 39.1
Glyma.02G134900 Glycine max HOM05D002914 ORTHO05D003196 1.2e-08 63.5 88 50.0
Cpa.g.sc62.45 Carica papaya HOM05D002914 ORTHO05D003196 1.6e-08 63.2 61 50.8
Nn1g05872 Nelumbo nucifera HOM05D002914 ORTHO05D003196 1.6e-08 63.2 35 71.4
COL.COLO4_11718 Corchorus olitorius HOM05D002914 ORTHO05D003196 2.1e-08 62.8 58 48.3
Prupe.8G116500 Prunus persica HOM05D002914 ORTHO05D003196 2.1e-08 62.8 76 53.9
CsaV3_7G008810 Cucumis sativus L. HOM05D002914 ORTHO05D003196 2.8e-08 62.4 77 39.0
Lalb_Chr05g0219001 Lupinus albus HOM05D002914 ORTHO05D003196 2.8e-08 62.4 66 43.9
PSO170G6047 Papaver somniferum HOM05D002914 ORTHO05D003196 2.8e-08 62.4 57 50.9
ClCG02G005720 Citrullus lanatus HOM05D002914 ORTHO05D003196 3.6e-08 62.0 77 39.0
MELO3C028578.2 Cucumis melo HOM05D002914 ORTHO05D003196 3.6e-08 62.0 77 39.0
Gorai.013G040900 Gossypium raimondii HOM05D002914 ORTHO05D003196 3.6e-08 62.0 35 65.7
CSS0043526 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 4.7e-08 61.6 36 66.7
Manes.15G143200 Manihot esculenta HOM05D002914 ORTHO05D003196 4.7e-08 61.6 52 50.0
Oeu007255.1 Olea europaea HOM05D002914 ORTHO05D003196 4.7e-08 61.6 60 48.3
Sed0010504 Sechium edule HOM05D002914 ORTHO05D003196 4.7e-08 61.6 78 37.2
FAN20G0574 Fragaria x ananassa HOM05D002914 ORTHO05D003196 6.2e-08 61.2 65 46.2
FvH4_2g06840 Fragaria vesca HOM05D002914 ORTHO05D003196 8.1e-08 60.8 37 70.3
FAN24G0092 Fragaria x ananassa HOM05D002914 ORTHO05D003196 8.1e-08 60.8 37 70.3
Gohir.A13G037800 Gossypium hirsutum HOM05D002914 ORTHO05D003196 8.1e-08 60.8 61 50.8
Gohir.D13G036200 Gossypium hirsutum HOM05D002914 ORTHO05D003196 8.1e-08 60.8 59 49.2
Gorai.005G104900 Gossypium raimondii HOM05D002914 ORTHO05D003196 8.1e-08 60.8 89 38.2
SalBow6G6648 Salvia bowleyana HOM05D002914 ORTHO05D003196 8.1e-08 60.8 42 59.5
Sc08g0000120 Simmondsia chinensis HOM05D002914 ORTHO05D003196 8.1e-08 60.8 101 45.5
Psat7g121600 Pisum sativum HOM05D002914 ORTHO05D003196 1.1e-07 60.5 79 53.2
TWI31G1086 Tripterygium wilfordii HOM05D002914 ORTHO05D003196 1.1e-07 60.5 90 35.6
CSS0030933 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 1.8e-07 59.7 41 58.5
CSS0032479 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 1.8e-07 59.7 41 58.5
FAN15G1103 Fragaria x ananassa HOM05D002914 ORTHO05D003196 2.3e-07 59.3 65 44.6
Gohir.D02G212150 Gossypium hirsutum HOM05D002914 ORTHO05D003196 2.3e-07 59.3 80 50.0
Sabra09G0081200 Salix brachista HOM05D002914 ORTHO05D003196 3.1e-07 58.9 94 40.4
Gohir.D02G092940 Gossypium hirsutum HOM05D002914 ORTHO05D003196 4.0e-07 58.5 89 37.1
Sabra04G0095900 Salix brachista HOM05D002914 ORTHO05D003196 6.8e-07 57.8 87 44.8
PGR142G0527 Punica granatum HOM05D002914 ORTHO05D003196 3.4e-06 55.5 62 51.6
ATR0225G004 Amborella trichopoda HOM05D002914 ORTHO05D003196 4.4e-06 55.1 92 42.4
unitig_699.g19875 Utricularia gibba HOM05D002914 ORTHO05D003196 5.8e-06 54.7 62 43.5
Gohir.A01G132111 Gossypium hirsutum HOM05D002914 ORTHO05D003196 7.6e-06 54.3 77 35.1


User provided reference genes

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