Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0306951 Rosa chinensis HOM05D007988 ORTHO05D009824 2.2e-161 572.4 317 100.0
FAN27G1764 Fragaria x ananassa HOM05D007988 ORTHO05D009824 3.3e-117 425.6 302 83.8
FvH4_2g35040 Fragaria vesca HOM05D007988 ORTHO05D009824 3.1e-115 419.1 303 83.2
FAN15G1013 Fragaria x ananassa HOM05D007988 ORTHO05D009824 6.9e-91 338.2 238 88.2
FAN20G0590 Fragaria x ananassa HOM05D007988 ORTHO05D009824 6.5e-73 278.5 171 89.5
MD15G1088100 Malus domestica HOM05D007988 ORTHO05D009824 1.3e-52 211.1 349 52.4
Prupe.1G442100 Prunus persica HOM05D007988 ORTHO05D009824 1.4e-51 207.6 328 50.6
Duzib116G0104 Durio zibethinus HOM05D007988 ORTHO05D009824 1.9e-40 170.6 334 48.5
Duzib041G0811 Durio zibethinus HOM05D007988 ORTHO05D009824 3.2e-40 169.9 341 43.7
Haze_17653 Corylus avellana HOM05D007988 ORTHO05D009824 9.4e-40 168.3 327 45.0
COL.COLO4_33785 Corchorus olitorius HOM05D007988 ORTHO05D009824 1.2e-39 167.9 330 47.6
Thecc.08G135700 Theobroma cacao HOM05D007988 ORTHO05D009824 1.2e-39 167.9 327 48.3
Gohir.D05G240900 Gossypium hirsutum HOM05D007988 ORTHO05D009824 3.6e-39 166.4 341 46.0
Gorai.009G250000 Gossypium raimondii HOM05D007988 ORTHO05D009824 3.6e-39 166.4 341 46.0
TWI60G0631 Tripterygium wilfordii HOM05D007988 ORTHO05D009824 3.6e-39 166.4 332 44.9
Ciclev10004037m.g Citrus clementina HOM05D007988 ORTHO05D009824 8.0e-39 165.2 334 47.3
CiPaw.15G029500 Carya illinoinensis HOM05D007988 ORTHO05D009824 1.0e-38 164.9 329 45.6
Duzib093G1224 Durio zibethinus HOM05D007988 ORTHO05D009824 1.0e-38 164.9 334 45.8
QL09p030989 Quercus lobata HOM05D007988 ORTHO05D009824 4.0e-38 162.9 335 46.6
Gohir.A05G239200 Gossypium hirsutum HOM05D007988 ORTHO05D009824 8.8e-38 161.8 340 45.9
TWI34G1662 Tripterygium wilfordii HOM05D007988 ORTHO05D009824 4.1e-35 152.9 342 42.1
Potri.002G076200 Populus trichocarpa HOM05D007988 ORTHO05D009824 5.3e-35 152.5 327 40.4
CiPaw.16G021200 Carya illinoinensis HOM05D007988 ORTHO05D009824 1.3e-33 147.9 337 47.2
Manes.02G170000 Manihot esculenta HOM05D007988 ORTHO05D009824 1.3e-33 147.9 329 41.9
Atru.chr13.1616 Acer truncatum HOM05D007988 ORTHO05D009824 5.5e-32 142.5 340 41.8
CSS0046822 Camellia sinensis var. sinensis HOM05D007988 ORTHO05D009824 9.4e-32 141.7 324 43.8
Lj4P663T19 Lonicera japonica HOM05D007988 ORTHO05D009824 1.4e-30 137.9 329 43.5
Sed0016946 Sechium edule HOM05D007988 ORTHO05D009824 2.6e-29 133.7 307 42.7
Lj1g0027207 Lotus japonicus HOM05D007988 ORTHO05D009824 3.4e-29 133.3 331 40.8
Lj4P666T14 Lonicera japonica HOM05D007988 ORTHO05D009824 4.4e-29 132.9 331 42.0
Rhsim11G0074200 Rhododendron simsii HOM05D007988 ORTHO05D009824 7.5e-29 132.1 326 44.2
TPR.G6352 Trifolium pratense HOM05D007988 ORTHO05D009824 7.5e-29 132.1 313 47.3
Cpa.g.sc64.159 Carica papaya HOM05D007988 ORTHO05D009824 9.8e-29 131.7 344 41.9
Sabra05G0140800 Salix brachista HOM05D007988 ORTHO05D009824 1.3e-28 131.3 334 39.2
GSVIVG01008783001 Vitis vinifera HOM05D007988 ORTHO05D009824 1.7e-28 131.0 336 43.5
TAR381G0794 Trochodendron aralioides HOM05D007988 ORTHO05D009824 1.8e-27 127.5 317 45.7
Medtr3g088735 Medicago truncatula HOM05D007988 ORTHO05D009824 3.1e-27 126.7 313 43.1
Glyma.04G244300 Glycine max HOM05D007988 ORTHO05D009824 1.7e-25 120.9 346 38.7
Ca_16619_v3 Cicer arietinum L. HOM05D007988 ORTHO05D009824 1.9e-24 117.5 325 37.2
Glyma.06G119000 Glycine max HOM05D007988 ORTHO05D009824 3.2e-24 116.7 348 38.5
Nn1g08990 Nelumbo nucifera HOM05D007988 ORTHO05D009824 7.2e-24 115.5 342 37.7
VMungo1309G2256 Vigna mungo HOM05D007988 ORTHO05D009824 9.5e-24 115.2 322 39.4
Actinidia29496 Actinidia chinensis HOM05D000744 ORTHO05D000332 6.1e-23 112.5 199 41.7
Phvul.009G131400 Phaseolus vulgaris HOM05D007988 ORTHO05D009824 6.1e-23 112.5 356 36.8
SGA_v2.0_scaffold52G18904 Striga asiatica HOM05D007988 ORTHO05D009824 1.4e-22 111.3 310 37.4
Oeu022143.1 Olea europaea HOM05D007988 ORTHO05D009824 4.0e-22 109.8 358 36.0
Psat0s3071g0240 Pisum sativum HOM05D007988 ORTHO05D009824 4.4e-21 106.3 210 41.9
Eucgr.F02525 Eucalyptus grandis HOM05D007988 ORTHO05D009824 7.5e-21 105.5 345 36.5
CANSAT25G2204 Cannabis sativa HOM05D007988 ORTHO05D009824 2.2e-20 104.0 377 37.4
AL1G34650 Arabidopsis lyrata HOM05D012069 ORTHO05D009824 1.1e-19 101.7 344 35.2
AT1G21510 Arabidopsis thaliana HOM05D012069 ORTHO05D009824 1.4e-19 101.3 337 35.0
Nn5g28477 Nelumbo nucifera HOM05D007988 ORTHO05D009824 1.8e-19 100.9 332 35.2
MELO3C008455.2 Cucumis melo HOM05D007988 ORTHO05D009824 5.4e-19 99.4 314 42.7
A06p17540 Brassica napus HOM05D012069 ORTHO05D009824 9.2e-19 98.6 336 38.4
Sp1g19040 Schrenkiella parvula HOM05D012069 ORTHO05D009824 1.2e-18 98.2 332 36.4
BraA06t24850Z Brassica rapa HOM05D012069 ORTHO05D009824 4.5e-18 96.3 333 38.1
Cc10_g13460 Coffea canephora HOM05D007988 ORTHO05D009824 5.9e-18 95.9 342 40.6
Lalb_Chr10g0101461 Lupinus albus HOM05D007988 ORTHO05D009824 5.9e-18 95.9 324 35.5
arahy.Tifrunner.gnm1.ann1.GX31L7 Arachis hypogaea HOM05D007988 ORTHO05D009824 7.8e-18 95.5 322 36.6
CAN.G46.16 Capsicum annuum HOM05D007988 ORTHO05D009824 1.3e-17 94.7 349 38.4
HanXRQChr09g0256671 Helianthus annuus HOM05D007988 ORTHO05D009824 1.3e-17 94.7 315 35.2
arahy.Tifrunner.gnm1.ann1.1JY9DA Arachis hypogaea HOM05D007988 ORTHO05D009824 1.7e-17 94.4 322 36.3
CARHR021870 Cardamine hirsuta HOM05D012069 ORTHO05D009824 2.3e-17 94.0 334 31.4
THA.LOC104813286 Tarenaya hassleriana HOM05D012069 ORTHO05D009824 2.9e-17 93.6 323 38.1
BcaB07g32147 Brassica carinata HOM05D012069 ORTHO05D009824 3.3e-16 90.1 346 35.5
ECA232G2067 Erigeron canadensis HOM05D007988 ORTHO05D009824 4.3e-16 89.7 319 36.4
Dinv37735 Davidia involucrata HOM05D007988 ORTHO05D009824 5.6e-16 89.4 186 41.4
MBI06_g32176_MAGBIO Magnolia biondii HOM05D007988 ORTHO05D009824 5.6e-16 89.4 360 35.3
Sopen04g026140 Solanum pennellii HOM05D007988 ORTHO05D009824 4.7e-15 86.3 345 36.5
CSS0018515 Camellia sinensis var. sinensis HOM05D007988 ORTHO05D009824 8.0e-15 85.5 143 47.6
Carub.0001s2093 Capsella rubella HOM05D012069 ORTHO05D009824 1.0e-14 85.1 344 36.3
AUR62007686 Chenopodium quinoa HOM05D007988 ORTHO05D009824 1.4e-14 84.7 231 32.5
CsaV3_6G031310 Cucumis sativus L. HOM05D007988 ORTHO05D009824 4.0e-14 83.2 285 42.5
Thhalv10009526m.g Eutrema salsugineum HOM05D012069 ORTHO05D009824 4.4e-13 79.7 369 32.5
Migut.C01082 Erythranthe guttata HOM05D007988 ORTHO05D009824 5.7e-13 79.3 322 35.4
C05p20410 Brassica napus HOM05D012069 ORTHO05D009824 2.2e-12 77.4 337 35.0
BcaC05g26060 Brassica carinata HOM05D012069 ORTHO05D009824 3.7e-12 76.6 337 34.7
BolC5t30735H Brassica oleracea HOM05D012069 ORTHO05D009824 3.7e-12 76.6 337 34.7
ClCG08G006150 Citrullus lanatus HOM05D007988 ORTHO05D009824 1.4e-11 74.7 300 39.7
Lalb_Chr04g0253601 Lupinus albus HOM05D007988 ORTHO05D009824 7.0e-11 72.4 157 39.5
EL10Ac1g01385 Beta vulgaris HOM05D007988 ORTHO05D009824 3.5e-10 70.1 348 35.1
Aqoxy5G02290 Aquilegia oxysepala HOM05D007988 ORTHO05D009824 7.8e-10 68.9 195 40.0
Sed0000785 Sechium edule HOM05D007988 ORTHO05D009824 1.7e-09 67.8 189 37.0
PGSC0003DMG400002385 Solanum tuberosum HOM05D007988 ORTHO05D009824 5.6e-08 62.8 199 34.2
Hund26769 Selenicereus undatus HOM05D007988 ORTHO05D009824 8.0e-07 58.9 358 28.5


User provided reference genes

Program Settings