Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0306821 Rosa chinensis HOM05D006497 ORTHO05D008263 1.3e-76 289.7 148 100.0
FvH4_2g35131 Fragaria vesca HOM05D006497 ORTHO05D008263 2.6e-64 248.8 148 87.2
FAN15G0473 Fragaria x ananassa HOM05D006497 ORTHO05D008263 1.3e-63 246.5 149 87.9
Prupe.1G443400 Prunus persica HOM05D006497 ORTHO05D008263 1.6e-50 203.0 149 72.5
FAN27G1249 Fragaria x ananassa HOM05D006497 ORTHO05D008263 8.0e-50 200.7 148 75.0
MD08G1108800 Malus domestica HOM05D006497 ORTHO05D008263 7.0e-46 187.6 147 68.7
Potri.018G058200 Populus trichocarpa HOM05D006497 ORTHO05D008263 4.2e-43 178.3 148 66.9
GSVIVG01035327001 Vitis vinifera HOM05D006497 ORTHO05D008263 8.0e-42 174.1 150 66.7
CSS0028638 Camellia sinensis var. sinensis HOM05D006497 ORTHO05D008263 2.0e-40 169.5 150 62.7
Atru.chr7.2042 Acer truncatum HOM05D006497 ORTHO05D008263 2.6e-40 169.1 148 62.2
COL.COLO4_21011 Corchorus olitorius HOM05D006497 ORTHO05D008263 5.7e-40 167.9 152 62.5
Rhsim05G0006000 Rhododendron simsii HOM05D006497 ORTHO05D008263 5.7e-40 167.9 150 62.7
Sabra18G0054600 Salix brachista HOM05D006497 ORTHO05D008263 5.7e-40 167.9 148 62.8
QL12p040844 Quercus lobata HOM05D006497 ORTHO05D008263 7.5e-40 167.5 159 60.4
CANSAT54G2618 Cannabis sativa HOM05D006497 ORTHO05D008263 9.8e-40 167.2 151 62.9
Actinidia18207 Actinidia chinensis HOM05D006497 ORTHO05D008263 1.3e-39 166.8 148 61.5
CSS0007660 Camellia sinensis var. sinensis HOM05D006497 ORTHO05D008263 4.9e-39 164.9 152 60.5
CSS0049899 Camellia sinensis var. sinensis HOM05D006497 ORTHO05D008263 4.9e-39 164.9 152 60.5
Cpa.g.sc27.217 Carica papaya HOM05D006497 ORTHO05D008263 4.9e-39 164.9 162 57.4
Nitab4.5_0000318g0100 Nicotiana tabacum HOM05D006497 ORTHO05D008263 6.3e-39 164.5 152 61.2
Gohir.A07G022176 Gossypium hirsutum HOM05D006497 ORTHO05D008263 1.8e-38 162.9 154 60.4
Gorai.001G024500 Gossypium raimondii HOM05D006497 ORTHO05D008263 3.1e-38 162.2 154 59.7
Hma1.2p1_0049F.1_g028230 Hydrangea macrophylla HOM05D006497 ORTHO05D008263 3.1e-38 162.2 151 60.9
Nitab4.5_0002021g0040 Nicotiana tabacum HOM05D006497 ORTHO05D008263 4.1e-38 161.8 150 59.3
SalBow1G7152 Salvia bowleyana HOM05D006497 ORTHO05D008263 4.1e-38 161.8 150 58.7
Haze_01965 Corylus avellana HOM05D006497 ORTHO05D008263 5.4e-38 161.4 111 73.0
MELO3C003479.2 Cucumis melo HOM05D006497 ORTHO05D008263 5.4e-38 161.4 148 60.8
Sopen07g031330 Solanum pennellii HOM05D006497 ORTHO05D008263 7.0e-38 161.0 124 65.3
ClCG11G014990 Citrullus lanatus HOM05D006497 ORTHO05D008263 9.2e-38 160.6 148 60.8
Sc09g0009540 Simmondsia chinensis HOM05D006497 ORTHO05D008263 1.2e-37 160.2 136 64.7
Cfa005390 Carpinus fangiana HOM05D006497 ORTHO05D008263 2.0e-37 159.5 111 72.1
Peaxi162Scf00840g00427 Petunia axillaris HOM05D006497 ORTHO05D008263 2.7e-37 159.1 110 71.8
Migut.E01547 Erythranthe guttata HOM05D006497 ORTHO05D008263 3.5e-37 158.7 127 64.6
AUR62040211 Chenopodium quinoa HOM05D006497 ORTHO05D008263 5.9e-37 157.9 110 70.9
Solyc07g063140.1 Solanum lycopersicum HOM05D006497 ORTHO05D008263 5.9e-37 157.9 102 74.5
CsaV3_3G048400 Cucumis sativus L. HOM05D006497 ORTHO05D008263 7.8e-37 157.5 148 58.8
Eucgr.C00622 Eucalyptus grandis HOM05D006497 ORTHO05D008263 1.0e-36 157.1 151 55.6
PGSC0003DMG400012416 Solanum tuberosum HOM05D006497 ORTHO05D008263 1.3e-36 156.8 124 64.5
Lsat_1_v5_gn_3_27161 Lactuca sativa HOM05D006497 ORTHO05D008263 2.3e-36 156.0 151 59.6
PSO210G2909 Papaver somniferum HOM05D006497 ORTHO05D008263 2.3e-36 156.0 112 68.8
TAR636G3582 Trochodendron aralioides HOM05D006497 ORTHO05D008263 2.3e-36 156.0 148 58.8
Thecc.09G049300 Theobroma cacao HOM05D006497 ORTHO05D008263 3.8e-36 155.2 149 58.4
Cc08_g10030 Coffea canephora HOM05D006497 ORTHO05D008263 5.0e-36 154.8 103 72.8
Duzib168G0301 Durio zibethinus HOM05D006497 ORTHO05D008263 5.0e-36 154.8 150 58.7
EL10Ac2g03958 Beta vulgaris HOM05D006497 ORTHO05D008263 6.6e-36 154.5 147 57.8
ECA246G5018 Erigeron canadensis HOM05D006497 ORTHO05D008263 6.6e-36 154.5 149 59.1
Nn8g39006 Nelumbo nucifera HOM05D006497 ORTHO05D008263 1.1e-35 153.7 111 70.3
PSO210G1815 Papaver somniferum HOM05D006497 ORTHO05D008263 1.1e-35 153.7 130 60.8
Ah.10g034670 Amaranthus hybridus HOM05D006497 ORTHO05D008263 1.9e-35 152.9 110 70.0
CiPaw.08G027800 Carya illinoinensis HOM05D006497 ORTHO05D008263 2.5e-35 152.5 161 58.4
Aqoxy6G00985 Aquilegia oxysepala HOM05D006497 ORTHO05D008263 3.3e-35 152.1 111 72.1
DCAR_003057 Daucus carota HOM05D006497 ORTHO05D008263 3.3e-35 152.1 115 67.0
Sed0025405 Sechium edule HOM05D006497 ORTHO05D008263 3.3e-35 152.1 148 58.1
MSTRG.11681 Avicennia marina HOM05D006497 ORTHO05D008263 1.6e-34 149.8 96 77.1
Nn8g40951 Nelumbo nucifera HOM05D006497 ORTHO05D008263 2.1e-34 149.4 112 69.6
PGR031G1870 Punica granatum HOM05D006497 ORTHO05D008263 4.7e-34 148.3 111 66.7
AUR62009213 Chenopodium quinoa HOM05D006497 ORTHO05D008263 8.0e-34 147.5 110 65.5
Ciclev10009788m.g Citrus clementina HOM05D006497 ORTHO05D008263 1.0e-33 147.1 157 52.9
Sed0009640 Sechium edule HOM05D006497 ORTHO05D008263 1.0e-33 147.1 151 58.3
CAN.G162.59 Capsicum annuum HOM05D006497 ORTHO05D008263 1.8e-33 146.4 125 59.2
Os03g0651000 Oryza sativa ssp. japonica HOM05D006497 ORTHO05D008263 4.0e-33 145.2 150 55.3
THA.LOC104803742 Tarenaya hassleriana HOM05D006497 ORTHO05D008263 5.2e-33 144.8 156 53.2
Migut.A00169 Erythranthe guttata HOM05D006497 ORTHO05D008263 1.2e-32 143.7 96 69.8
Glyma.10G214200 Glycine max HOM05D006497 ORTHO05D008263 2.6e-32 142.5 153 55.6
arahy.Tifrunner.gnm1.ann1.0Y6FKJ Arachis hypogaea HOM05D006497 ORTHO05D008263 4.4e-32 141.7 124 62.1
Phvul.007G091500 Phaseolus vulgaris HOM05D006497 ORTHO05D008263 4.4e-32 141.7 118 63.6
arahy.Tifrunner.gnm1.ann1.E0CW41 Arachis hypogaea HOM05D006497 ORTHO05D008263 7.5e-32 141.0 124 60.5
Sp7g30690 Schrenkiella parvula HOM05D006497 ORTHO05D008263 7.5e-32 141.0 120 61.7
Glyma.20G177400 Glycine max HOM05D006497 ORTHO05D008263 1.3e-31 140.2 109 65.1
VMungo0720G1877 Vigna mungo HOM05D006497 ORTHO05D008263 1.3e-31 140.2 132 58.3
CDE10G0177 Ceratophyllum demersum HOM05D006497 ORTHO05D008263 1.7e-31 139.8 109 64.2
Hund19485 Selenicereus undatus HOM05D006497 ORTHO05D008263 2.2e-31 139.4 187 47.1
Ca_10596_v3 Cicer arietinum L. HOM05D006497 ORTHO05D008263 2.9e-31 139.0 115 62.6
Thhalv10026449m.g Eutrema salsugineum HOM05D006497 ORTHO05D008263 4.9e-31 138.3 109 64.2
BraA03t15206Z Brassica rapa HOM05D006497 ORTHO05D008263 8.3e-31 137.5 134 53.0
Aa31LG2G18050 Aethionema arabicum HOM05D006497 ORTHO05D008263 1.9e-30 136.3 149 51.7
BcaB03g12770 Brassica carinata HOM05D006497 ORTHO05D008263 1.9e-30 136.3 146 52.7
A03p61670 Brassica napus HOM05D006497 ORTHO05D008263 2.4e-30 136.0 134 53.0
C03p86910 Brassica napus HOM05D006497 ORTHO05D008263 4.1e-30 135.2 152 53.3
C07p59400 Brassica napus HOM05D006497 ORTHO05D008263 4.1e-30 135.2 126 57.9
BolC3t20984H Brassica oleracea HOM05D006497 ORTHO05D008263 4.1e-30 135.2 152 53.3
BolC7t46384H Brassica oleracea HOM05D006497 ORTHO05D008263 4.1e-30 135.2 109 62.4
CDE10G1018 Ceratophyllum demersum HOM05D006497 ORTHO05D008263 4.1e-30 135.2 109 62.4
A08p17840 Brassica napus HOM05D006497 ORTHO05D008263 5.4e-30 134.8 149 53.7
Zm00001eb218450 Zea mays HOM05D006497 ORTHO05D008263 5.4e-30 134.8 102 66.7
BraA08t33734Z Brassica rapa HOM05D006497 ORTHO05D008263 7.0e-30 134.4 149 53.7
Medtr1g095920 Medicago truncatula HOM05D006497 ORTHO05D008263 7.0e-30 134.4 121 62.0
ATR0749G075 Amborella trichopoda HOM05D006497 ORTHO05D008263 9.2e-30 134.0 114 63.2
BcaNung02143 Brassica carinata HOM05D006497 ORTHO05D008263 9.2e-30 134.0 153 51.6
Carub.0007s0757 Capsella rubella HOM05D006497 ORTHO05D008263 9.2e-30 134.0 125 58.4
Lalb_Chr06g0162131 Lupinus albus HOM05D006497 ORTHO05D008263 1.2e-29 133.7 92 70.7
Psat6g186080 Pisum sativum HOM05D006497 ORTHO05D008263 1.6e-29 133.3 121 61.2
ATR0304G027 Amborella trichopoda HOM05D006497 ORTHO05D008263 2.0e-29 132.9 100 68.0
AL7G18780 Arabidopsis lyrata HOM05D006497 ORTHO05D008263 2.7e-29 132.5 158 48.7
Lj5g0021165 Lotus japonicus HOM05D006497 ORTHO05D008263 6.0e-29 131.3 145 51.7
unitig_32.g11478 Utricularia gibba HOM05D006497 ORTHO05D008263 6.0e-29 131.3 112 59.8
SGA_v2.0_scaffold163G38048 Striga asiatica HOM05D006497 ORTHO05D008263 7.8e-29 131.0 211 38.9
TPR.G11934 Trifolium pratense HOM05D006497 ORTHO05D008263 7.8e-29 131.0 118 60.2
CARHR240920 Cardamine hirsuta HOM05D006497 ORTHO05D008263 1.3e-28 130.2 109 62.4
TPR.G1790 Trifolium pratense HOM05D006497 ORTHO05D008263 3.0e-28 129.0 96 67.7
Oeu011793.1 Olea europaea HOM05D006497 ORTHO05D008263 3.9e-28 128.6 149 51.7
AT4G32915 Arabidopsis thaliana HOM05D006497 ORTHO05D008263 8.6e-28 127.5 112 56.2
HPP92_013944 Vanilla planifolia HOM05D006497 ORTHO05D008263 2.5e-27 125.9 115 53.9
TWI32G0413 Tripterygium wilfordii HOM05D006497 ORTHO05D008263 1.8e-25 119.8 124 59.7
SEGI_35319 Sequoiadendron giganteum HOM05D006497 ORTHO05D008263 5.2e-25 118.2 110 58.2
HanXRQChr17g0538891 Helianthus annuus HOM05D006497 ORTHO05D008263 3.2e-22 109.0 71 76.1
arahy.Tifrunner.gnm1.ann1.2EH2S8 Arachis hypogaea HOM05D006497 ORTHO05D009640 1.6e-21 106.7 203 36.9
SGA_v2.0_scaffold169G38673 Striga asiatica HOM05D006497 ORTHO05D008263 2.7e-21 105.9 96 61.5
vmacro08276 Vaccinium macrocarpon HOM05D006497 ORTHO05D008263 6.0e-21 104.8 67 70.1
Dinv27945 Davidia involucrata HOM05D006497 ORTHO05D008263 6.6e-20 101.3 55 87.3
Manes.03G057500 Manihot esculenta HOM05D006497 ORTHO05D008263 1.2e-18 97.1 115 54.8
Mapoly0154s0030 Marchantia polymorpha HOM05D006497 ORTHO05D008263 2.1e-18 96.3 108 43.5
CBR_g31997 Chara braunii HOM05D006497 ORTHO05D008263 8.9e-17 90.9 99 47.5
MBI13_g05466_MAGBIO Magnolia biondii HOM05D006497 ORTHO05D008263 2.6e-16 89.4 53 81.1
Pp3c2_33430 Physcomitrium patens HOM05D006497 ORTHO05D008263 3.2e-14 82.4 111 36.9
Cre08.g364650 Chlamydomonas reinhardtii HOM05D001184 ORTHO05D007940 4.1e-14 82.0 104 40.4
Gohir.D07G023800 Gossypium hirsutum HOM05D006497 ORTHO05D008263 9.2e-14 80.9 105 51.4
SMO146G0150 Selaginella moellendorffii HOM05D006497 ORTHO05D008263 1.3e-12 77.0 92 42.4
Rhsim07G0144900 Rhododendron simsii HOM05D006497 ORTHO05D008263 1.5e-11 73.6 46 69.6
MCO07G547 Micromonas commoda HOM05D001184 ORTHO05D007940 2.8e-10 69.3 100 40.0
PRCOL_00005999 Prasinoderma coloniale HOM05D006497 ORTHO05D008263 2.0e-08 63.2 96 37.5


User provided reference genes

Program Settings