Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0306811 Rosa chinensis HOM05D006132 ORTHO05D007305 0.0e+00 3877.0 1993 100.0
FvH4_2g35140 Fragaria vesca HOM05D006132 ORTHO05D007305 0.0e+00 3588.1 1993 91.7
MD08G1108900 Malus domestica HOM05D006132 ORTHO05D007305 0.0e+00 3146.7 2003 81.8
Prupe.1G443500 Prunus persica HOM05D006132 ORTHO05D007305 0.0e+00 3134.7 1902 84.4
QL12p040855 Quercus lobata HOM05D006132 ORTHO05D007305 0.0e+00 2646.7 2008 69.5
CiPaw.07G201400 Carya illinoinensis HOM05D006132 ORTHO05D007305 0.0e+00 2620.5 2008 68.6
Haze_01967 Corylus avellana HOM05D006132 ORTHO05D007305 0.0e+00 2620.1 2012 69.3
Atru.chr7.2044 Acer truncatum HOM05D006132 ORTHO05D007305 0.0e+00 2518.8 2003 66.6
Thecc.09G049200 Theobroma cacao HOM05D006132 ORTHO05D007305 0.0e+00 2508.8 2018 66.2
GSVIVG01035326001 Vitis vinifera HOM05D006132 ORTHO05D007305 0.0e+00 2506.9 2013 66.5
Dinv23402 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 2496.1 1917 68.6
Ciclev10010526m.g Citrus clementina HOM05D006132 ORTHO05D007305 0.0e+00 2486.1 1920 68.3
Manes.03G057600 Manihot esculenta HOM05D006132 ORTHO05D007305 0.0e+00 2455.2 2010 65.9
Gorai.001G024600 Gossypium raimondii HOM05D006132 ORTHO05D007305 0.0e+00 2450.2 2003 66.0
Potri.018G057900 Populus trichocarpa HOM05D006132 ORTHO05D007305 0.0e+00 2436.0 1995 66.0
TAR636G1718 Trochodendron aralioides HOM05D006132 ORTHO05D007305 0.0e+00 2430.6 2090 62.5
COL.COLO4_21010 Corchorus olitorius HOM05D006132 ORTHO05D007305 0.0e+00 2424.0 1921 67.0
Duzib168G1248 Durio zibethinus HOM05D006132 ORTHO05D007305 0.0e+00 2407.9 2013 64.1
Glyma.06G088900 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 2389.8 2001 63.8
Glyma.04G087200 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 2384.4 1997 63.6
FAN20G0110 Fragaria x ananassa HOM05D006132 ORTHO05D007305 0.0e+00 2376.3 1332 91.0
Lalb_Chr08g0242871 Lupinus albus HOM05D006132 ORTHO05D007305 0.0e+00 2375.1 1915 65.2
Dinv02537 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 2374.0 1961 64.9
Nn8g39007 Nelumbo nucifera HOM05D006132 ORTHO05D007305 0.0e+00 2360.9 2080 61.4
Ca_15565_v3 Cicer arietinum L. HOM05D006132 ORTHO05D007305 0.0e+00 2357.0 2001 63.0
Gohir.D07G023900 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 2351.6 1908 65.6
Medtr3g110417 Medicago truncatula HOM05D006132 ORTHO05D007305 0.0e+00 2348.5 1997 62.7
Sed0028022 Sechium edule HOM05D006132 ORTHO05D007305 0.0e+00 2341.6 2005 62.6
Lj1g0008631 Lotus japonicus HOM05D006132 ORTHO05D007305 0.0e+00 2327.4 1997 62.0
TWI34G0160 Tripterygium wilfordii HOM05D006132 ORTHO05D007305 0.0e+00 2319.3 2011 62.8
Lj8C561G12 Lonicera japonica HOM05D006132 ORTHO05D007305 0.0e+00 2317.7 1903 63.9
vmacro00180 Vaccinium macrocarpon HOM05D006132 ORTHO05D007305 0.0e+00 2314.7 1953 63.9
CsaV3_3G048410 Cucumis sativus L. HOM05D006132 ORTHO05D007305 0.0e+00 2311.6 2008 62.1
Phvul.009G112700 Phaseolus vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 2310.4 1989 62.4
MELO3C003478.2 Cucumis melo HOM05D006132 ORTHO05D007305 0.0e+00 2310.0 1989 62.4
VMungo1309G3161 Vigna mungo HOM05D006132 ORTHO05D007305 0.0e+00 2305.4 1999 61.9
Psat0s3156g0040 Pisum sativum HOM05D006132 ORTHO05D007305 0.0e+00 2298.5 2002 61.7
ClCG11G015000 Citrullus lanatus HOM05D006132 ORTHO05D007305 0.0e+00 2276.9 2014 61.4
TPR.G12374 Trifolium pratense HOM05D006132 ORTHO05D007305 0.0e+00 2271.1 2014 62.0
arahy.Tifrunner.gnm1.ann1.GM174E Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 2263.4 2139 58.5
Gohir.A07G022180 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 2242.6 1861 65.2
arahy.Tifrunner.gnm1.ann1.XPLI6K Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 2214.9 1972 60.8
Cc08_g10020 Coffea canephora HOM05D006132 ORTHO05D007305 0.0e+00 2205.3 1992 59.6
PGR031G1631 Punica granatum HOM05D006132 ORTHO05D007305 0.0e+00 2181.8 1917 61.5
Aqoxy7G03955 Aquilegia oxysepala HOM05D006132 ORTHO05D007305 0.0e+00 2175.6 2072 58.1
Sc09g0009530 Simmondsia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 2162.1 1922 60.4
MSTRG.25925 Avicennia marina HOM05D006132 ORTHO05D007305 0.0e+00 2139.4 1932 59.1
PSO210G7354 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 2137.5 2068 57.3
MBI01_g01249_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 0.0e+00 2132.5 2036 57.1
Sopen08g019670 Solanum pennellii HOM05D006132 ORTHO05D007305 0.0e+00 2129.0 1921 59.4
PSO210G2191 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 2125.9 2072 57.9
Migut.A00170 Erythranthe guttata HOM05D006132 ORTHO05D007305 0.0e+00 2122.8 1915 59.0
CAN.G9.6 Capsicum annuum HOM05D006132 ORTHO05D007305 0.0e+00 2104.3 1920 58.9
AUR62040212 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 2103.6 2023 56.3
AUR62009214 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 2082.4 2026 56.3
Rhsim11G0049000 Rhododendron simsii HOM05D006132 ORTHO05D007305 0.0e+00 2071.6 1917 59.3
THA.LOC104818581 Tarenaya hassleriana HOM05D006132 ORTHO05D007305 0.0e+00 2065.8 2008 57.5
Eucgr.C00619 Eucalyptus grandis HOM05D006132 ORTHO05D007305 0.0e+00 2051.9 1878 59.3
ECA240G1625 Erigeron canadensis HOM05D006132 ORTHO05D007305 0.0e+00 2048.5 1903 58.1
Thhalv10026823m.g Eutrema salsugineum HOM05D006132 ORTHO05D007305 0.0e+00 2046.6 1908 58.3
AT4G32820 Arabidopsis thaliana HOM05D006132 ORTHO05D007305 0.0e+00 2036.9 1912 57.8
DCAR_007699 Daucus carota HOM05D006132 ORTHO05D007305 0.0e+00 2034.6 1950 57.0
SalBow4G1475 Salvia bowleyana HOM05D006132 ORTHO05D007305 0.0e+00 2033.5 1915 57.7
AL7G18910 Arabidopsis lyrata HOM05D006132 ORTHO05D007305 0.0e+00 2031.5 1907 58.1
Ah.11g044450 Amaranthus hybridus HOM05D006132 ORTHO05D007305 0.0e+00 2025.8 1994 55.2
Sp7g30590 Schrenkiella parvula HOM05D006132 ORTHO05D007305 0.0e+00 2022.7 1912 57.6
Carub.0007s0767 Capsella rubella HOM05D006132 ORTHO05D007305 0.0e+00 2021.9 1912 57.9
Oeu038827.1 Olea europaea HOM05D006132 ORTHO05D007305 0.0e+00 2021.5 1915 56.9
EL10Ac2g03960 Beta vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 2020.4 2168 52.2
C01p06070 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 2012.3 1912 57.4
BcaC09g52078 Brassica carinata HOM05D006132 ORTHO05D007305 0.0e+00 2008.8 1915 57.4
Lsat_1_v5_gn_3_109020 Lactuca sativa HOM05D006132 ORTHO05D007305 0.0e+00 2004.2 1997 55.6
A01p05470 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 1996.1 1913 56.7
HanXRQChr03g0077991 Helianthus annuus HOM05D006132 ORTHO05D007305 0.0e+00 1984.5 2015 54.7
BraA01t00520Z Brassica rapa HOM05D006132 ORTHO05D007305 0.0e+00 1982.6 1944 56.0
BolC1t00600H Brassica oleracea HOM05D006132 ORTHO05D007305 0.0e+00 1981.8 1944 56.2
Hund19486 Selenicereus undatus HOM05D006132 ORTHO05D007305 0.0e+00 1949.1 2002 54.7
Aa31sc208G40 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 1943.3 1912 56.2
SGA_v2.0_scaffold103G30057 Striga asiatica HOM05D006132 ORTHO05D007305 0.0e+00 1938.7 1934 55.6
Nitab4.5_0000318g0080 Nicotiana tabacum HOM05D006132 ORTHO05D007305 0.0e+00 1931.0 1915 55.7
Aa31LG5G17300 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 1928.3 1928 55.5
Actinidia01213 Actinidia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 1884.0 1914 56.4
ATR0815G026 Amborella trichopoda HOM05D006132 ORTHO05D007305 0.0e+00 1842.8 2079 50.2
Cpa.g.sc7.235 Carica papaya HOM05D006132 ORTHO05D007305 0.0e+00 1738.8 1609 59.2
Solyc08g066010.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 0.0e+00 1651.3 1551 58.6
HPP92_019594 Vanilla planifolia HOM05D006132 ORTHO05D007305 0.0e+00 1564.3 1794 49.8
unitig_0.g2566 Utricularia gibba HOM05D006132 ORTHO05D007305 0.0e+00 1428.7 1910 45.1
CSS0000087 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 0.0e+00 1395.6 1047 68.6
Pp3c4_1880 Physcomitrium patens HOM05D006132 ORTHO05D007305 0.0e+00 1250.7 2178 38.5
SMO365G0056 Selaginella moellendorffii HOM05D006132 ORTHO05D007305 0.0e+00 1190.6 1939 38.3
Mapoly0021s0014 Marchantia polymorpha HOM05D006132 ORTHO05D007305 0.0e+00 1174.5 2199 35.7
AagrBONN_evm.TU.Sc2ySwM_344.875 Anthoceros agrestis HOM05D006132 ORTHO05D007305 0.0e+00 1080.5 2115 35.6
CSS0048337 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 2.6e-297 1026.5 794 68.0
CARHR240810 Cardamine hirsuta HOM05D006132 ORTHO05D007305 4.3e-247 859.8 673 65.8
CSS0029204 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 6.4e-243 845.9 800 59.4
Nitab4.5_0002021g0060 Nicotiana tabacum HOM05D006132 ORTHO05D007305 2.7e-241 840.5 1401 40.4
Peaxi162Scf00840g00429 Petunia axillaris HOM05D006132 ORTHO05D007305 5.6e-239 832.8 793 57.9
SHI18807 Sapria himalayana HOM05D006132 ORTHO05D007305 8.1e-238 828.9 1142 43.4
CBR_g22939 Chara braunii HOM05D006132 ORTHO05D000048 1.3e-227 795.0 2097 30.9
Psat4g077080 Pisum sativum HOM05D006132 ORTHO05D007305 2.9e-219 767.3 743 57.2
Psat4g077000 Pisum sativum HOM05D006132 ORTHO05D007305 2.1e-201 708.0 726 55.2
SHI18802 Sapria himalayana HOM05D006132 ORTHO05D007305 6.5e-187 659.8 798 50.0
Solyc08g066000.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 1.5e-130 472.6 367 62.9
Peaxi162Scf00840g00428 Petunia axillaris HOM05D006132 ORTHO05D007305 7.8e-124 450.3 358 62.6
TAR636G0297 Trochodendron aralioides HOM05D006132 ORTHO05D007305 3.3e-90 338.6 496 45.2
TAR636G2276 Trochodendron aralioides HOM05D006132 ORTHO05D007305 3.2e-85 322.0 267 64.4
Psat2g119040 Pisum sativum HOM05D006132 ORTHO05D007305 8.7e-75 287.3 221 66.5
CSS0021543 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 6.1e-68 264.6 217 60.8
Zm00001eb053280 Zea mays HOM05D006132 ORTHO05D007305 5.9e-63 248.1 272 47.8
SHI18803 Sapria himalayana HOM05D006132 ORTHO05D007305 6.3e-57 228.0 298 47.3
Lsat_1_v5_gn_0_25341 Lactuca sativa HOM05D006132 ORTHO05D007305 1.8e-56 226.5 269 45.7
Cpa.g.sc7.234 Carica papaya HOM05D006132 ORTHO05D007305 1.4e-51 210.3 124 83.1
Carub.0003s0455 Capsella rubella HOM05D006132 ORTHO05D007305 3.7e-41 175.6 234 44.4
Zm00001eb053310 Zea mays HOM05D006132 ORTHO05D007305 1.6e-39 170.2 271 42.4
Zm00001eb053300 Zea mays HOM05D006132 ORTHO05D007305 2.0e-31 143.3 145 55.2
MBI04_g05153_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 8.0e-28 131.3 127 52.0
Glyma.18G112500 Glycine max HOM05D006132 ORTHO05D007305 9.2e-24 117.9 90 72.2
MD08G1109200 Malus domestica HOM05D006132 ORTHO05D007305 1.5e-21 110.5 71 76.1
Os03g0685750 Oryza sativa ssp. japonica HOM05D006132 ORTHO05D007305 9.5e-21 107.8 108 50.9
Zm00001eb053290 Zea mays HOM05D006132 ORTHO05D007305 4.9e-17 95.5 69 63.8
MCO10G298 Micromonas commoda HOM05D006132 ORTHO05D007305 6.4e-17 95.1 467 25.7
Sabra06G0183100 Salix brachista HOM05D006132 ORTHO05D007305 1.4e-16 94.0 122 54.1
CiPaw.04G074200 Carya illinoinensis HOM05D006132 ORTHO05D007305 7.8e-15 88.2 61 68.9
Glyma.11G174000 Glycine max HOM05D006132 ORTHO05D007305 8.6e-14 84.7 66 56.1
CDE12G0288 Ceratophyllum demersum HOM05D004517 ORTHO05D005366 3.3e-13 82.8 90 53.3
Phvul.003G090001 Phaseolus vulgaris HOM05D006132 ORTHO05D007305 2.8e-12 79.7 120 43.3
MBI04_g44310_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 3.7e-09 69.3 69 50.7
Psat3g153160 Pisum sativum HOM05D006816 ORTHO05D008517 8.3e-09 68.2 78 46.2
Psat3g171600 Pisum sativum HOM05D006132 ORTHO05D007305 3.2e-08 66.2 90 44.4
SMO351G0355 Selaginella moellendorffii HOM05D023170 ORTHO05D007305 9.2e-08 64.7 71 53.5


User provided reference genes

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