Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0306801 Rosa chinensis HOM05D005768 ORTHO05D007100 1.4e-110 402.9 200 100.0
FAN27G1715 Fragaria x ananassa HOM05D005768 ORTHO05D007100 1.5e-99 366.3 200 91.5
FAN20G2834 Fragaria x ananassa HOM05D005768 ORTHO05D007100 2.4e-97 359.0 200 91.0
Prupe.1G443600 Prunus persica HOM05D005768 ORTHO05D007100 7.2e-86 320.9 191 82.7
FAN15G1520 Fragaria x ananassa HOM05D005768 ORTHO05D007100 1.1e-75 287.0 162 89.5
MD08G1109000 Malus domestica HOM05D005768 ORTHO05D007100 1.5e-75 286.6 196 75.5
Gorai.001G024700 Gossypium raimondii HOM05D005768 ORTHO05D007100 3.2e-70 268.9 188 71.3
Gohir.D07G024000 Gossypium hirsutum HOM05D005768 ORTHO05D007100 4.2e-70 268.5 188 71.3
Dinv27944 Davidia involucrata HOM05D005768 ORTHO05D007100 9.7e-67 257.3 181 69.6
Ciclev10022280m.g Citrus clementina HOM05D005768 ORTHO05D007100 3.7e-66 255.4 198 66.2
Duzib168G0475 Durio zibethinus HOM05D005768 ORTHO05D007100 6.3e-66 254.6 192 67.2
Atru.chr4.1221 Acer truncatum HOM05D005768 ORTHO05D007100 1.1e-65 253.8 182 70.3
GSVIVG01035325001 Vitis vinifera HOM05D005768 ORTHO05D007100 3.1e-65 252.3 183 68.9
Aqoxy5G03966 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 7.7e-64 247.7 199 64.8
Atru.chr7.2675 Acer truncatum HOM05D005768 ORTHO05D007100 1.0e-63 247.3 189 68.8
Thecc.09G049100 Theobroma cacao HOM05D005768 ORTHO05D007100 3.8e-63 245.4 188 65.4
Manes.02G043100 Manihot esculenta HOM05D005768 ORTHO05D007100 8.5e-63 244.2 183 66.7
CSS0002565 Camellia sinensis var. sinensis HOM05D005768 ORTHO05D007100 1.5e-62 243.4 199 63.8
CiPaw.07G201500 Carya illinoinensis HOM05D005768 ORTHO05D007100 1.5e-62 243.4 177 68.9
CANSAT56G2391 Cannabis sativa HOM05D005768 ORTHO05D007100 4.7e-61 238.4 203 62.1
Hma1.2p1_0442F.1_g153950 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 1.4e-60 236.9 194 62.4
Migut.A00171 Erythranthe guttata HOM05D005768 ORTHO05D007100 4.0e-60 235.3 193 61.7
Eucgr.C02988 Eucalyptus grandis HOM05D005768 ORTHO05D007100 5.2e-60 235.0 176 67.6
Cpa.g.sc1868.1 Carica papaya HOM05D005768 ORTHO05D007100 1.5e-59 233.4 207 58.9
Glyma.19G233100 Glycine max HOM05D005768 ORTHO05D007100 2.6e-59 232.6 188 63.8
COL.COLO4_21009 Corchorus olitorius HOM05D005768 ORTHO05D007100 1.7e-58 229.9 192 62.5
Cc00_g09250 Coffea canephora HOM05D005768 ORTHO05D007100 2.8e-58 229.2 196 58.7
PSO063G0290 Papaver somniferum HOM05D005768 ORTHO05D007100 2.8e-58 229.2 193 64.8
Actinidia18208 Actinidia chinensis HOM05D005768 ORTHO05D007100 3.7e-58 228.8 189 64.0
Rhsim07G0145000 Rhododendron simsii HOM05D005768 ORTHO05D007100 3.7e-58 228.8 181 63.5
Hma1.2p1_0603F.1_g187720 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 4.8e-58 228.4 166 66.9
Sabra06G0183200 Salix brachista HOM05D005768 ORTHO05D007100 2.4e-57 226.1 212 57.5
Lj1g0020400 Lotus japonicus HOM05D005768 ORTHO05D007100 5.3e-57 224.9 179 62.6
PGR044G0118 Punica granatum HOM05D005768 ORTHO05D007100 5.3e-57 224.9 183 62.3
EL10Ac5g12654 Beta vulgaris HOM05D005768 ORTHO05D007100 1.2e-56 223.8 175 64.0
Gohir.A07G022184 Gossypium hirsutum HOM05D005768 ORTHO05D007100 1.6e-56 223.4 150 74.0
THA.LOC104812009 Tarenaya hassleriana HOM05D005768 ORTHO05D007100 2.0e-56 223.0 184 63.0
TPR.G33208 Trifolium pratense HOM05D005768 ORTHO05D007100 2.7e-56 222.6 179 62.0
vmacro07473 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 3.5e-56 222.2 181 61.9
MELO3C003477.2 Cucumis melo HOM05D005768 ORTHO05D007100 4.5e-56 221.9 199 59.3
AUR62017359 Chenopodium quinoa HOM05D005768 ORTHO05D007100 5.9e-56 221.5 166 64.5
Aqoxy7G01356 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 7.7e-56 221.1 199 57.8
Phvul.006G089400 Phaseolus vulgaris HOM05D005768 ORTHO05D007100 7.7e-56 221.1 185 61.6
QL12p040865 Quercus lobata HOM05D005768 ORTHO05D007100 1.0e-55 220.7 283 46.6
Psat0s1830g0160 Pisum sativum HOM05D005768 ORTHO05D007100 1.3e-55 220.3 179 62.6
Sopen08g019690 Solanum pennellii HOM05D005768 ORTHO05D007100 1.3e-55 220.3 203 57.1
Potri.006G234800 Populus trichocarpa HOM05D005768 ORTHO05D007100 2.2e-55 219.5 205 58.0
PSO832G3354 Papaver somniferum HOM05D005768 ORTHO05D007100 3.8e-55 218.8 177 66.1
TWI63G1351 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 3.8e-55 218.8 175 61.7
HanXRQChr03g0078001 Helianthus annuus HOM05D005768 ORTHO05D007100 5.0e-55 218.4 158 67.1
Lalb_Chr24g0397251 Lupinus albus HOM05D005768 ORTHO05D007100 5.0e-55 218.4 191 59.2
PSO832G1534 Papaver somniferum HOM05D005768 ORTHO05D007100 5.0e-55 218.4 184 63.0
CsaV3_3G048420 Cucumis sativus L. HOM05D005768 ORTHO05D007100 6.5e-55 218.0 199 57.8
FvH4_2g35150 Fragaria vesca HOM05D005768 ORTHO05D007100 6.5e-55 218.0 119 90.8
Lalb_Chr08g0242881 Lupinus albus HOM05D005768 ORTHO05D007100 8.5e-55 217.6 188 59.0
Solyc08g066030.3 Solanum lycopersicum HOM05D005768 ORTHO05D007100 1.5e-54 216.9 203 57.1
Ah.02g116310 Amaranthus hybridus HOM05D005768 ORTHO05D007100 1.9e-54 216.5 170 61.8
TWI34G0524 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 2.5e-54 216.1 173 63.6
AUR62010536 Chenopodium quinoa HOM05D005768 ORTHO05D007100 3.2e-54 215.7 158 65.8
Medtr7g112710 Medicago truncatula HOM05D005768 ORTHO05D007100 3.2e-54 215.7 157 66.9
SalBow6G5216 Salvia bowleyana HOM05D005768 ORTHO05D007100 3.2e-54 215.7 158 67.7
Lsat_1_v5_gn_3_56860 Lactuca sativa HOM05D005768 ORTHO05D007100 7.2e-54 214.5 168 64.3
PSO063G1479 Papaver somniferum HOM05D005768 ORTHO05D007100 7.2e-54 214.5 193 61.7
PSO063G2632 Papaver somniferum HOM05D005768 ORTHO05D007100 7.2e-54 214.5 193 61.7
PSO063G5891 Papaver somniferum HOM05D005768 ORTHO05D007100 7.2e-54 214.5 193 61.7
Sed0022019 Sechium edule HOM05D005768 ORTHO05D007100 7.2e-54 214.5 163 67.5
TAR624G0371 Trochodendron aralioides HOM05D005768 ORTHO05D007100 1.2e-53 213.8 182 62.6
Nn6g34840 Nelumbo nucifera HOM05D005768 ORTHO05D007100 2.1e-53 213.0 163 68.1
Psat0s1830g0280 Pisum sativum HOM05D005768 ORTHO05D007100 2.1e-53 213.0 179 58.7
Sc09g0009490 Simmondsia chinensis HOM05D005768 ORTHO05D007100 2.7e-53 212.6 209 56.9
TPR.G29192 Trifolium pratense HOM05D005768 ORTHO05D007100 3.6e-53 212.2 164 63.4
TAR383G0888 Trochodendron aralioides HOM05D005768 ORTHO05D007100 1.4e-52 210.3 158 69.0
arahy.Tifrunner.gnm1.ann1.FJ9VJT Arachis hypogaea HOM05D005768 ORTHO05D007100 2.3e-52 209.5 201 56.7
Haze_01966 Corylus avellana HOM05D005768 ORTHO05D007100 3.0e-52 209.1 156 67.3
Sp1g18590 Schrenkiella parvula HOM05D005768 ORTHO05D007100 3.0e-52 209.1 175 61.7
PGSC0003DMG401025462 Solanum tuberosum HOM05D005768 ORTHO05D007100 3.0e-52 209.1 177 61.6
SGA_v2.0_scaffold103G30048 Striga asiatica HOM05D005768 ORTHO05D007100 3.0e-52 209.1 148 70.3
Sed0000338 Sechium edule HOM05D005768 ORTHO05D007100 4.0e-52 208.8 174 62.6
CARHR021320 Cardamine hirsuta HOM05D005768 ORTHO05D007100 8.8e-52 207.6 186 58.6
Aa31LG7G5050 Aethionema arabicum HOM05D005768 ORTHO05D007100 9.8e-51 204.1 188 55.3
AT1G76480 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 2.8e-50 202.6 195 55.9
BcaB03g14295 Brassica carinata HOM05D005768 ORTHO05D007100 3.7e-50 202.2 174 59.8
AT1G20890 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 8.3e-50 201.1 184 58.2
BcaB07g32084 Brassica carinata HOM05D005768 ORTHO05D007100 1.4e-49 200.3 175 60.6
MSTRG.25924 Avicennia marina HOM05D005768 ORTHO05D007100 4.1e-49 198.7 154 64.9
Thhalv10008823m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 4.1e-49 198.7 187 57.2
Nitab4.5_0000318g0060 Nicotiana tabacum HOM05D005768 ORTHO05D007100 7.0e-49 198.0 148 65.5
AL1G33910 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 1.2e-48 197.2 184 57.6
Carub.0001s2036 Capsella rubella HOM05D005768 ORTHO05D007100 1.2e-48 197.2 186 57.0
A07p15420 Brassica napus HOM05D005768 ORTHO05D007100 2.7e-48 196.1 157 63.7
BcaC06g34845 Brassica carinata HOM05D005768 ORTHO05D007100 3.5e-48 195.7 157 62.4
ECA234G0765 Erigeron canadensis HOM05D000185 ORTHO05D000105 7.7e-48 194.5 144 67.4
Peaxi162Scf00699g00655 Petunia axillaris HOM05D005768 ORTHO05D007100 1.7e-47 193.4 163 60.7
vmacro05269 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 5.5e-46 188.3 171 59.6
Lj7A696G17 Lonicera japonica HOM05D005768 ORTHO05D007100 6.8e-44 181.4 194 55.2
Nitab4.5_0002021g0070 Nicotiana tabacum HOM05D005768 ORTHO05D007100 1.5e-43 180.3 137 64.2
Os03g0804100 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 4.4e-43 178.7 160 60.6
unitig_0.g2567 Utricularia gibba HOM05D005768 ORTHO05D007100 1.7e-42 176.8 139 59.7
SEGI_27706 Sequoiadendron giganteum HOM05D005768 ORTHO05D007100 6.3e-42 174.9 153 57.5
PSO832G4156 Papaver somniferum HOM05D005768 ORTHO05D007100 1.4e-41 173.7 142 65.5
Oeu033885.1 Olea europaea HOM05D005768 ORTHO05D007100 3.1e-41 172.6 119 68.1
Os08g0374900 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 5.4e-41 171.8 157 59.2
Zm00001eb061390 Zea mays HOM05D005768 ORTHO05D007100 1.2e-40 170.6 184 51.6
PSO063G4631 Papaver somniferum HOM05D005768 ORTHO05D007100 3.5e-40 169.1 154 62.3
SalBow4G3076 Salvia bowleyana HOM05D005768 ORTHO05D007100 1.0e-39 167.5 187 49.2
Hund19578 Selenicereus undatus HOM05D005768 ORTHO05D007100 1.7e-39 166.8 120 69.2
AL2G36620 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 7.3e-38 161.4 185 50.3
BolC7t42805H Brassica oleracea HOM05D005768 ORTHO05D007100 1.2e-37 160.6 124 64.5
Ca_05797_v3 Cicer arietinum L. HOM05D001134 ORTHO05D001035 1.2e-37 160.6 129 62.0
C07p22730 Brassica napus HOM05D005768 ORTHO05D007100 6.1e-37 158.3 146 57.5
A06p16890 Brassica napus HOM05D005768 ORTHO05D007100 1.4e-36 157.1 137 61.3
BraA06t24798Z Brassica rapa HOM05D005768 ORTHO05D007100 1.7e-34 150.2 176 48.9
C05p19520 Brassica napus HOM05D005768 ORTHO05D007100 4.1e-33 145.6 163 52.1
BolC5t30654H Brassica oleracea HOM05D005768 ORTHO05D007100 4.1e-33 145.6 163 52.1
ClCG02G014210 Citrullus lanatus HOM05D005768 ORTHO05D007100 1.3e-31 140.6 130 56.2
ATR0693G003 Amborella trichopoda HOM05D005768 ORTHO05D007100 8.6e-31 137.9 159 48.4
Thhalv10019630m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 3.3e-30 136.0 155 50.3
Glyma.03G235400 Glycine max HOM05D005768 ORTHO05D007100 1.6e-29 133.7 128 58.6
MBI02_g46987_MAGBIO Magnolia biondii HOM05D005768 ORTHO05D007100 4.7e-29 132.1 104 66.3
HPP92_009604 Vanilla planifolia HOM05D005768 ORTHO05D007100 4.4e-27 125.6 137 50.4
MBI02_g46884_MAGBIO Magnolia biondii HOM05D000614 ORTHO05D007100 9.8e-27 124.4 118 57.6
Pp3c24_1520 Physcomitrium patens HOM05D005768 ORTHO05D007100 2.0e-24 116.7 195 36.4
Mapoly0062s0068 Marchantia polymorpha HOM05D005768 ORTHO05D007100 6.0e-24 115.2 167 41.3
Sc09g0009510 Simmondsia chinensis HOM05D005768 ORTHO05D007100 3.0e-23 112.8 90 64.4
CDE02G0943 Ceratophyllum demersum HOM05D005768 ORTHO05D007100 4.7e-21 105.5 90 58.9
HanXRQChr14g0439211 Helianthus annuus HOM05D005768 ORTHO05D007100 3.2e-17 92.8 84 58.3
DCAR_003074 Daucus carota HOM05D001613 ORTHO05D001556 1.0e-15 87.8 73 65.8
Oeu002722.1 Olea europaea HOM05D005768 ORTHO05D007100 7.3e-14 81.6 70 58.6
Cre12.g547734 Chlamydomonas reinhardtii HOM05D005768 ORTHO05D007100 1.5e-11 73.9 172 36.0
SEGI_03586 Sequoiadendron giganteum HOM05D005768 ORTHO05D007100 2.9e-10 69.7 44 72.7
Sc09g0009520 Simmondsia chinensis HOM05D005768 ORTHO05D007100 4.1e-09 65.9 65 52.3
BcaC05g25998 Brassica carinata HOM05D005768 ORTHO05D007100 5.4e-09 65.5 48 62.5
ClCG11G015010 Citrullus lanatus HOM05D005768 ORTHO05D007100 1.2e-08 64.3 96 45.8
CBR_g130 Chara braunii HOM05D000019 ORTHO05D000002 1.6e-08 63.9 164 29.9
MCO02G048 Micromonas commoda HOM05D005768 ORTHO05D007100 3.5e-08 62.8 137 29.9
AUR62033068 Chenopodium quinoa HOM05D000002 ORTHO05D000001 1.1e-06 57.8 62 51.6


User provided reference genes

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