Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0306611 Rosa chinensis HOM05D005974 ORTHO05D007201 1.1e-240 836.3 418 100.0
FvH4_2g35300 Fragaria vesca HOM05D005974 ORTHO05D007201 1.0e-222 776.5 419 93.8
FAN27G3236 Fragaria x ananassa HOM05D005974 ORTHO05D007201 2.5e-221 771.9 419 93.3
FAN15G0062 Fragaria x ananassa HOM05D005974 ORTHO05D007201 5.5e-221 770.8 419 93.6
FAN20G0082 Fragaria x ananassa HOM05D005974 ORTHO05D007201 5.1e-219 764.2 419 93.1
MD15G1090800 Malus domestica HOM05D005974 ORTHO05D007201 2.6e-207 725.3 419 87.4
COL.COLO4_20996 Corchorus olitorius HOM05D005974 ORTHO05D007201 3.0e-203 711.8 418 84.4
Gohir.D06G091000 Gossypium hirsutum HOM05D005974 ORTHO05D007201 1.2e-199 699.9 418 84.0
Gorai.010G105000 Gossypium raimondii HOM05D005974 ORTHO05D007201 7.7e-199 697.2 417 83.7
Gohir.A06G091700 Gossypium hirsutum HOM05D005974 ORTHO05D007201 2.5e-197 692.2 418 83.5
GSVIVG01035293001 Vitis vinifera HOM05D005974 ORTHO05D007201 2.5e-197 692.2 418 81.8
Thecc.09G047600 Theobroma cacao HOM05D005974 ORTHO05D007201 7.2e-197 690.6 414 82.4
Manes.03G060100 Manihot esculenta HOM05D005974 ORTHO05D007201 5.2e-195 684.5 417 81.3
TWI63G1635 Tripterygium wilfordii HOM05D005974 ORTHO05D007201 2.0e-194 682.6 418 81.1
Dinv23389 Davidia involucrata HOM05D005974 ORTHO05D007201 4.4e-194 681.4 418 81.8
PGR044G1757 Punica granatum HOM05D005974 ORTHO05D007201 6.3e-193 677.6 418 79.9
Ciclev10010686m.g Citrus clementina HOM05D005974 ORTHO05D007201 1.4e-192 676.4 420 80.2
PGR044G0481 Punica granatum HOM05D005974 ORTHO05D007201 3.1e-192 675.2 421 79.8
Cpa.g.sc7.214 Carica papaya HOM05D005974 ORTHO05D007201 4.1e-192 674.9 414 80.9
Atru.chr7.2057 Acer truncatum HOM05D005974 ORTHO05D007201 7.0e-192 674.1 418 81.3
CiPaw.08G027100 Carya illinoinensis HOM05D005974 ORTHO05D007201 3.5e-191 671.8 418 79.7
CANSAT80G2257 Cannabis sativa HOM05D005974 ORTHO05D007201 5.9e-191 671.0 418 80.4
Migut.E01538 Erythranthe guttata HOM05D005974 ORTHO05D007201 1.3e-190 669.8 418 79.2
CsaV3_3G048470 Cucumis sativus L. HOM05D005974 ORTHO05D007201 2.9e-190 668.7 422 79.6
Nitab4.5_0001309g0090 Nicotiana tabacum HOM05D005974 ORTHO05D007201 2.9e-190 668.7 419 79.0
Potri.003G158000 Populus trichocarpa HOM05D005974 ORTHO05D007201 2.9e-190 668.7 420 79.5
Oeu006965.1 Olea europaea HOM05D005974 ORTHO05D007201 8.5e-190 667.2 417 80.8
MSTRG.14030 Avicennia marina HOM05D005974 ORTHO05D007201 1.1e-189 666.8 418 80.4
CSS0034694 Camellia sinensis var. sinensis HOM05D005974 ORTHO05D007201 7.2e-189 664.1 419 78.3
HanXRQChr06g0174221 Helianthus annuus HOM05D005974 ORTHO05D007201 3.6e-188 661.8 417 78.4
MELO3C003472.2 Cucumis melo HOM05D005974 ORTHO05D007201 1.8e-187 659.4 431 78.0
HanXRQChr17g0539061 Helianthus annuus HOM05D005974 ORTHO05D007201 1.8e-187 659.4 418 77.3
Eucgr.C02982 Eucalyptus grandis HOM05D005974 ORTHO05D007201 1.5e-186 656.4 418 78.2
SGA_v2.0_scaffold169G38660 Striga asiatica HOM05D005974 ORTHO05D007201 1.3e-185 653.3 369 84.6
EL10Ac5g11988 Beta vulgaris HOM05D005974 ORTHO05D007201 8.2e-185 650.6 417 76.3
ECA246G2549 Erigeron canadensis HOM05D005974 ORTHO05D007201 8.2e-185 650.6 417 77.9
Rhsim02G0175300 Rhododendron simsii HOM05D005974 ORTHO05D007201 8.2e-185 650.6 419 76.8
Solyc12g095850.2 Solanum lycopersicum HOM05D005974 ORTHO05D007201 2.4e-184 649.0 422 77.5
Lsat_1_v5_gn_3_25800 Lactuca sativa HOM05D005974 ORTHO05D007201 7.0e-184 647.5 418 75.8
PSO832G2350 Papaver somniferum HOM05D005974 ORTHO05D007201 5.9e-183 644.4 426 75.6
Sopen12g031750 Solanum pennellii HOM05D005974 ORTHO05D007201 5.9e-183 644.4 422 77.0
Dinv27921 Davidia involucrata HOM05D005974 ORTHO05D007201 2.9e-182 642.1 418 77.8
arahy.Tifrunner.gnm1.ann1.CL6SAC Arachis hypogaea HOM05D005974 ORTHO05D007201 3.8e-182 641.7 420 76.7
Sabra03G0114600 Salix brachista HOM05D005974 ORTHO05D007201 6.5e-182 641.0 370 84.6
Sc09g0009450 Simmondsia chinensis HOM05D005974 ORTHO05D007201 1.9e-181 639.4 417 77.2
Cc08_g09880 Coffea canephora HOM05D005974 ORTHO05D007201 2.5e-181 639.0 418 76.3
CAN.G208.66 Capsicum annuum HOM05D005974 ORTHO05D007201 3.2e-181 638.6 421 76.0
Glyma.06G088000 Glycine max HOM05D005974 ORTHO05D007201 1.6e-180 636.3 413 76.3
SalBow1G5620 Salvia bowleyana HOM05D005974 ORTHO05D007201 2.1e-180 636.0 450 72.0
Glyma.04G086500 Glycine max HOM05D005974 ORTHO05D007201 2.3e-179 632.5 377 82.0
Actinidia30286 Actinidia chinensis HOM05D005974 ORTHO05D007201 4.0e-179 631.7 424 74.5
Medtr3g110360 Medicago truncatula HOM05D005974 ORTHO05D007201 1.5e-178 629.8 363 82.4
PSO063G5342 Papaver somniferum HOM05D005974 ORTHO05D007201 7.5e-178 627.5 427 74.0
Lj1g0014442 Lotus japonicus HOM05D005974 ORTHO05D007201 9.8e-178 627.1 412 75.0
TPR.G12488 Trifolium pratense HOM05D005974 ORTHO05D007201 1.7e-177 626.3 380 78.2
THA.LOC104803747 Tarenaya hassleriana HOM05D005974 ORTHO05D007201 2.2e-177 625.9 415 74.7
Ca_15573_v3 Cicer arietinum L. HOM05D005974 ORTHO05D007201 3.7e-177 625.2 369 81.6
Lalb_Chr08g0242951 Lupinus albus HOM05D005974 ORTHO05D007201 1.1e-176 623.6 382 79.6
Aqoxy7G01418 Aquilegia oxysepala HOM05D005974 ORTHO05D007201 9.1e-176 620.5 438 72.6
ClCG11G015070 Citrullus lanatus HOM05D005974 ORTHO05D007201 5.9e-175 617.8 430 74.9
AUR62018617 Chenopodium quinoa HOM05D005974 ORTHO05D007201 8.5e-174 614.0 343 84.3
Phvul.009G111700 Phaseolus vulgaris HOM05D005974 ORTHO05D007201 1.9e-173 612.8 412 74.3
TAR624G1429 Trochodendron aralioides HOM05D005974 ORTHO05D007201 2.1e-172 609.4 339 87.3
QL12p041028 Quercus lobata HOM05D005974 ORTHO05D007201 4.7e-172 608.2 393 79.1
Nitab4.5_0001737g0060 Nicotiana tabacum HOM05D005974 ORTHO05D007201 3.0e-171 605.5 422 74.4
ATR0705G128 Amborella trichopoda HOM05D005974 ORTHO05D007201 2.2e-169 599.4 359 80.5
Os01g0743400 Oryza sativa ssp. japonica HOM05D005974 ORTHO05D007201 3.7e-169 598.6 419 73.3
A03p15570 Brassica napus HOM05D005974 ORTHO05D007201 2.3e-166 589.3 396 73.7
BcaC01g06194 Brassica carinata HOM05D005974 ORTHO05D007201 8.6e-166 587.4 396 73.5
BolC3t14221H Brassica oleracea HOM05D005974 ORTHO05D007201 8.6e-166 587.4 396 73.5
BcaB01g04210 Brassica carinata HOM05D005974 ORTHO05D007201 1.1e-165 587.0 414 71.5
MBI04_g20303_MAGBIO Magnolia biondii HOM05D005974 ORTHO05D007201 5.6e-165 584.7 418 73.2
Sp4g05700 Schrenkiella parvula HOM05D005974 ORTHO05D007201 2.1e-164 582.8 416 70.4
CARHR115390 Cardamine hirsuta HOM05D005974 ORTHO05D007201 1.8e-163 579.7 417 68.8
AL4G17680 Arabidopsis lyrata HOM05D005974 ORTHO05D007201 2.3e-163 579.3 412 68.4
C04p55740 Brassica napus HOM05D005974 ORTHO05D007201 3.0e-163 578.9 430 67.7
BraA04t17588Z Brassica rapa HOM05D005974 ORTHO05D007201 3.0e-163 578.9 414 69.1
BolC4t27100H Brassica oleracea HOM05D005974 ORTHO05D007201 5.2e-163 578.2 414 69.3
C03p18200 Brassica napus HOM05D005974 ORTHO05D007201 1.5e-162 576.6 343 79.3
A04p20060 Brassica napus HOM05D005974 ORTHO05D007201 2.6e-162 575.9 425 67.5
arahy.Tifrunner.gnm1.ann1.I5HST9 Arachis hypogaea HOM05D005974 ORTHO05D007201 1.4e-160 570.1 420 70.7
BraA03t10849Z Brassica rapa HOM05D005974 ORTHO05D007201 1.4e-160 570.1 343 79.3
AT2G25840 Arabidopsis thaliana HOM05D005974 ORTHO05D007201 9.2e-160 567.4 412 68.7
Peaxi162Scf00064g01533 Petunia axillaris HOM05D005974 ORTHO05D007201 1.2e-159 567.0 370 75.9
Thhalv10002003m.g Eutrema salsugineum HOM05D005974 ORTHO05D007201 3.5e-159 565.5 410 68.5
Carub.0004s0567 Capsella rubella HOM05D005974 ORTHO05D007201 5.9e-159 564.7 412 68.2
Thhalv10002006m.g Eutrema salsugineum HOM05D005974 ORTHO05D007201 7.8e-159 564.3 373 74.3
Lj8C569G5 Lonicera japonica HOM05D000602 ORTHO05D001147 1.3e-158 563.5 401 72.1
CDE02G2857 Ceratophyllum demersum HOM05D005974 ORTHO05D007201 2.5e-157 559.3 320 83.8
Psat5g020640 Pisum sativum HOM05D005974 ORTHO05D007201 1.6e-156 556.6 320 81.9
HPP92_024453 Vanilla planifolia HOM05D005974 ORTHO05D007201 1.2e-154 550.4 415 68.0
BcaB06g29640 Brassica carinata HOM05D005974 ORTHO05D007201 7.0e-152 541.2 387 69.5
DCAR_018521 Daucus carota HOM05D005974 ORTHO05D007201 9.2e-152 540.8 299 86.6
AagrBONN_evm.TU.Sc2ySwM_344.1805 Anthoceros agrestis HOM05D005974 ORTHO05D007201 1.2e-151 540.4 356 72.5
Mapoly0137s0001 Marchantia polymorpha HOM05D005974 ORTHO05D007201 1.0e-150 537.3 361 71.2
Sed0012339 Sechium edule HOM05D005974 ORTHO05D007201 3.0e-150 535.8 346 79.8
AUR62007372 Chenopodium quinoa HOM05D005974 ORTHO05D007201 5.0e-150 535.0 369 71.0
Duzib187G1338 Durio zibethinus HOM05D005974 ORTHO05D007201 5.0e-150 535.0 400 70.0
Aa31LG5G9820 Aethionema arabicum HOM05D005974 ORTHO05D007201 8.1e-148 527.7 377 69.2
vmacro11047 Vaccinium macrocarpon HOM05D005974 ORTHO05D007201 7.1e-144 514.6 437 63.8
Pp3c13_12220 Physcomitrium patens HOM05D005974 ORTHO05D007201 7.8e-143 511.1 374 66.3
Prupe.1G445200 Prunus persica HOM05D005974 ORTHO05D007201 1.0e-142 510.8 300 87.0
VMungo1309G1913 Vigna mungo HOM05D005974 ORTHO05D007201 2.0e-138 496.5 297 81.1
SMO116G0397 Selaginella moellendorffii HOM05D005974 ORTHO05D007201 2.9e-137 492.7 342 68.4
Nn7g37050 Nelumbo nucifera HOM05D005974 ORTHO05D007201 6.4e-137 491.5 419 63.5
SGA_v2.0_scaffold163G38058 Striga asiatica HOM05D005974 ORTHO05D007201 6.4e-137 491.5 358 70.7
PRCOL_00006768 Prasinoderma coloniale HOM05D005974 ORTHO05D007201 2.1e-127 459.9 341 64.8
Hund14385 Selenicereus undatus HOM05D005974 ORTHO05D007201 1.3e-124 450.7 254 84.6
MCO14G391 Micromonas commoda HOM05D005974 ORTHO05D007201 2.4e-120 436.4 374 57.2
Cre05.g238322 Chlamydomonas reinhardtii HOM05D005974 ORTHO05D007201 4.2e-120 435.6 351 59.0
Gohir.D06G090920 Gossypium hirsutum HOM05D005974 ORTHO05D007201 6.2e-108 395.2 213 90.1
HanXRQChr06g0174211 Helianthus annuus HOM05D005974 ORTHO05D007201 4.2e-96 355.9 203 83.7
Zm00001eb153590 Zea mays HOM05D005974 ORTHO05D007201 4.8e-92 342.4 259 67.6
BcaB06g29641 Brassica carinata HOM05D005974 ORTHO05D007201 2.7e-87 326.6 244 69.3
CBR_g26161 Chara braunii HOM05D005974 ORTHO05D007201 5.5e-80 302.4 204 70.1
Haze_27433 Corylus avellana HOM05D005974 ORTHO05D007201 1.1e-67 261.5 274 49.6
Cfa024571 Carpinus fangiana HOM05D005974 ORTHO05D007201 3.5e-50 203.4 377 36.3
Ah.07g201090 Amaranthus hybridus HOM05D005974 ORTHO05D007201 6.1e-47 192.6 246 45.9
Haze_21915 Corylus avellana HOM05D005974 ORTHO05D007201 1.0e-46 191.8 123 82.1
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 7.5e-45 185.7 206 49.0
SEGI_31887 Sequoiadendron giganteum HOM05D005974 ORTHO05D007201 3.7e-36 156.8 101 73.3
SEGI_40033 Sequoiadendron giganteum HOM05D005974 ORTHO05D007201 2.5e-32 144.1 85 75.3
Lsat_1_v5_gn_9_95260 Lactuca sativa HOM05D005974 ORTHO05D007201 1.7e-28 131.3 165 44.8
CDE08G1286 Ceratophyllum demersum HOM05D000581 ORTHO05D000412 3.2e-27 127.1 74 79.7
VMungo1309G1904 Vigna mungo HOM05D005974 ORTHO05D007201 1.2e-26 125.2 74 77.0
Hund30611 Selenicereus undatus HOM05D005974 ORTHO05D007201 9.5e-24 115.5 127 53.5
Hund30885 Selenicereus undatus HOM05D005974 ORTHO05D007201 1.2e-23 115.2 128 54.7
Gohir.A05G045550 Gossypium hirsutum HOM05D005974 ORTHO05D007201 6.6e-17 92.8 74 68.9
Gohir.D06G090940 Gossypium hirsutum HOM05D005974 ORTHO05D007201 2.4e-14 84.3 44 86.4
arahy.Tifrunner.gnm1.ann1.05PEK3 Arachis hypogaea HOM05D005974 ORTHO05D038942 1.3e-12 78.6 100 42.0
Lsat_1_v5_gn_1_66781 Lactuca sativa HOM05D000921 ORTHO05D002852 3.8e-12 77.0 110 47.3
arahy.Tifrunner.gnm1.ann1.8YH8YH Arachis hypogaea HOM05D005974 ORTHO05D007201 7.1e-11 72.8 93 46.2
TAR383G0536 Trochodendron aralioides HOM05D005974 ORTHO05D007201 2.3e-09 67.8 45 66.7
CBR_g26165 Chara braunii HOM05D005974 ORTHO05D007201 5.6e-08 63.2 59 57.6
FvH4_5g31180 Fragaria vesca HOM05D000076 ORTHO05D005802 1.8e-06 58.2 37 78.4


User provided reference genes

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