Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0306001 Rosa chinensis HOM05D005302 ORTHO05D006422 5.7e-302 1040.0 491 100.0
FvH4_2g35770 Fragaria vesca HOM05D005302 ORTHO05D006422 4.1e-276 954.1 491 92.1
FAN27G3010 Fragaria x ananassa HOM05D005302 ORTHO05D006422 4.2e-273 944.1 491 91.4
FAN20G2881 Fragaria x ananassa HOM05D005302 ORTHO05D006422 2.0e-259 898.7 526 83.5
FAN15G3230 Fragaria x ananassa HOM05D005302 ORTHO05D006422 2.8e-256 888.3 521 82.9
MD15G1095400 Malus domestica HOM05D005302 ORTHO05D006422 1.1e-247 859.8 498 81.3
Prupe.1G450300 Prunus persica HOM05D005302 ORTHO05D006422 5.2e-247 857.4 492 81.9
MD08G1115600 Malus domestica HOM05D005302 ORTHO05D006422 7.8e-243 843.6 498 79.9
TWI34G0390 Tripterygium wilfordii HOM05D005302 ORTHO05D006422 5.2e-231 804.3 501 75.0
Gorai.009G050600 Gossypium raimondii HOM05D005302 ORTHO05D006422 8.9e-231 803.5 512 74.6
Dinv14245 Davidia involucrata HOM05D005302 ORTHO05D006422 2.0e-230 802.4 451 81.2
Glyma.04G082500 Glycine max HOM05D005302 ORTHO05D006422 2.0e-230 802.4 490 76.9
CiPaw.08G024700 Carya illinoinensis HOM05D005302 ORTHO05D006422 5.8e-230 800.8 464 79.3
Gohir.D05G049300 Gossypium hirsutum HOM05D005302 ORTHO05D006422 9.9e-230 800.0 512 74.2
Medtr3g110160 Medicago truncatula HOM05D005302 ORTHO05D006422 2.2e-229 798.9 484 76.2
Ca_15604_v3 Cicer arietinum L. HOM05D005302 ORTHO05D006422 1.4e-228 796.2 474 78.5
Actinidia13324 Actinidia chinensis HOM05D005302 ORTHO05D006422 1.9e-228 795.8 500 75.0
PGR044G1364 Punica granatum HOM05D005302 ORTHO05D006422 1.2e-227 793.1 504 73.0
Rhsim02G0179400 Rhododendron simsii HOM05D005302 ORTHO05D006422 3.5e-227 791.6 471 78.1
Psat5g022320 Pisum sativum HOM05D005302 ORTHO05D006422 1.3e-226 789.6 487 75.8
CiPaw.07G205300 Carya illinoinensis HOM05D005302 ORTHO05D006422 2.3e-226 788.9 506 73.1
Glyma.06G084100 Glycine max HOM05D005302 ORTHO05D006422 6.6e-226 787.3 464 78.2
CSS0024291 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 1.5e-225 786.2 447 80.1
CSS0027627 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 1.5e-225 786.2 447 80.1
QL12p029391 Quercus lobata HOM05D005302 ORTHO05D006422 1.5e-225 786.2 523 73.0
Duzib150G0232 Durio zibethinus HOM05D005302 ORTHO05D006422 3.3e-225 785.0 507 72.2
Phvul.009G108200 Phaseolus vulgaris HOM05D005302 ORTHO05D006422 5.6e-225 784.3 490 74.7
Atru.chr7.2133 Acer truncatum HOM05D005302 ORTHO05D006422 2.1e-224 782.3 487 75.4
Eucgr.C02909 Eucalyptus grandis HOM05D005302 ORTHO05D006422 2.1e-224 782.3 516 73.1
Haze_21877 Corylus avellana HOM05D005302 ORTHO05D006422 6.2e-224 780.8 559 67.6
Manes.16G072000 Manihot esculenta HOM05D005302 ORTHO05D006422 8.1e-224 780.4 502 72.3
Hma1.2p1_0393F.1_g143080 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 5.3e-223 777.7 470 76.4
VMungo1309G1003 Vigna mungo HOM05D005302 ORTHO05D006422 5.3e-223 777.7 485 74.6
Thecc.09G042800 Theobroma cacao HOM05D005302 ORTHO05D006422 6.9e-223 777.3 513 71.0
Lalb_Chr08g0243151 Lupinus albus HOM05D005302 ORTHO05D006422 9.0e-223 776.9 488 73.4
TAR624G0168 Trochodendron aralioides HOM05D005302 ORTHO05D006422 1.2e-222 776.5 481 75.7
Potri.018G040200 Populus trichocarpa HOM05D005302 ORTHO05D006422 2.6e-222 775.4 462 76.2
COL.COLO4_18671 Corchorus olitorius HOM05D005302 ORTHO05D006422 1.7e-221 772.7 514 71.8
CANSAT25G0630 Cannabis sativa HOM05D005302 ORTHO05D006422 2.9e-221 771.9 510 72.0
Ciclev10008169m.g Citrus clementina HOM05D005302 ORTHO05D006422 1.4e-220 769.6 478 74.9
Gohir.A07G022700 Gossypium hirsutum HOM05D005302 ORTHO05D006422 7.1e-220 767.3 484 74.0
Nn2g11666 Nelumbo nucifera HOM05D005302 ORTHO05D006422 1.2e-219 766.5 524 69.5
Gohir.A05G047400 Gossypium hirsutum HOM05D005302 ORTHO05D006422 2.1e-219 765.8 458 77.3
arahy.Tifrunner.gnm1.ann1.P7Z4SB Arachis hypogaea HOM05D005302 ORTHO05D006422 3.5e-219 765.0 444 77.3
Lj1g0022106 Lotus japonicus HOM05D005302 ORTHO05D006422 4.6e-219 764.6 425 80.2
CsaV3_2G030970 Cucumis sativus L. HOM05D005302 ORTHO05D006422 7.8e-219 763.8 459 76.0
arahy.Tifrunner.gnm1.ann1.R6A5BY Arachis hypogaea HOM05D005302 ORTHO05D006422 1.7e-218 762.7 444 77.0
CARHR240760 Cardamine hirsuta HOM05D005302 ORTHO05D006422 3.0e-218 761.9 449 78.0
Gorai.001G027200 Gossypium raimondii HOM05D005302 ORTHO05D006422 3.9e-218 761.5 495 72.5
Gohir.D07G026100 Gossypium hirsutum HOM05D005302 ORTHO05D006422 5.1e-218 761.1 484 73.3
MELO3C011150.2 Cucumis melo HOM05D005302 ORTHO05D006422 1.1e-217 760.0 465 75.1
Migut.A00220 Erythranthe guttata HOM05D005302 ORTHO05D006422 3.3e-217 758.4 448 76.3
Aqoxy7G03804 Aquilegia oxysepala HOM05D005302 ORTHO05D006422 1.3e-216 756.5 475 73.7
GSVIVG01035645001 Vitis vinifera HOM05D005302 ORTHO05D006422 2.8e-216 755.4 503 70.0
Cc08_g09240 Coffea canephora HOM05D005302 ORTHO05D006422 3.6e-216 755.0 428 79.2
Thhalv10025006m.g Eutrema salsugineum HOM05D005302 ORTHO05D006422 8.1e-216 753.8 474 74.5
Sp7g30530 Schrenkiella parvula HOM05D005302 ORTHO05D006422 8.1e-216 753.8 489 72.2
Sabra18G0040100 Salix brachista HOM05D005302 ORTHO05D006422 1.4e-215 753.1 499 71.3
Peaxi162Scf00822g00210 Petunia axillaris HOM05D005302 ORTHO05D006422 1.8e-215 752.7 488 71.3
MSTRG.11705 Avicennia marina HOM05D005302 ORTHO05D006422 4.0e-215 751.5 449 75.9
C07p59340 Brassica napus HOM05D005302 ORTHO05D006422 6.9e-215 750.7 475 73.5
BolC7t46379H Brassica oleracea HOM05D005302 ORTHO05D006422 6.9e-215 750.7 475 73.5
AL7G18970 Arabidopsis lyrata HOM05D005302 ORTHO05D006422 2.0e-214 749.2 463 74.1
ECA246G0277 Erigeron canadensis HOM05D005302 ORTHO05D006422 5.8e-214 747.7 471 73.2
Carub.0007s0772 Capsella rubella HOM05D005302 ORTHO05D006422 2.2e-213 745.7 472 72.7
HanXRQChr08g0236291 Helianthus annuus HOM05D005302 ORTHO05D006422 2.9e-213 745.3 428 78.7
Sed0007027 Sechium edule HOM05D005302 ORTHO05D006422 3.8e-213 745.0 458 73.8
A03p61580 Brassica napus HOM05D005302 ORTHO05D006422 1.9e-212 742.7 476 72.7
BraA03t15200Z Brassica rapa HOM05D005302 ORTHO05D006422 1.9e-212 742.7 476 72.7
AT4G32770 Arabidopsis thaliana HOM05D005302 ORTHO05D006422 2.4e-212 742.3 472 72.7
CAN.G21.50 Capsicum annuum HOM05D005302 ORTHO05D006422 2.4e-212 742.3 471 72.2
Nitab4.5_0010908g0010 Nicotiana tabacum HOM05D005302 ORTHO05D006422 7.1e-212 740.7 472 72.0
EL10Ac2g04046 Beta vulgaris HOM05D005302 ORTHO05D006422 4.6e-211 738.0 485 71.1
Lj8C588T0 Lonicera japonica HOM05D005302 ORTHO05D006422 1.8e-210 736.1 491 70.9
SalBow4G1479 Salvia bowleyana HOM05D005302 ORTHO05D006422 3.0e-210 735.3 433 75.5
SGA_v2.0_scaffold103G29944 Striga asiatica HOM05D005302 ORTHO05D006422 3.0e-210 735.3 445 75.3
DCAR_003119 Daucus carota HOM05D005302 ORTHO05D006422 6.7e-210 734.2 455 74.3
PGSC0003DMG400029051 Solanum tuberosum HOM05D005302 ORTHO05D006422 3.3e-209 731.9 449 74.8
PSO210G3865 Papaver somniferum HOM05D005302 ORTHO05D006422 4.3e-209 731.5 494 69.6
PSO210G0275 Papaver somniferum HOM05D005302 ORTHO05D006422 7.4e-209 730.7 506 68.2
Aa31LG2G17190 Aethionema arabicum HOM05D005302 ORTHO05D006422 6.2e-208 727.6 468 72.4
Sopen08g022330 Solanum pennellii HOM05D005302 ORTHO05D006422 8.1e-208 727.2 449 74.6
Solyc08g068570.4 Solanum lycopersicum HOM05D005302 ORTHO05D006422 3.1e-207 725.3 449 74.4
AUR62009303 Chenopodium quinoa HOM05D005302 ORTHO05D006422 1.1e-204 716.8 469 70.8
Lsat_1_v5_gn_5_33600 Lactuca sativa HOM05D005302 ORTHO05D006422 1.8e-202 709.5 453 73.1
ClCG08G012300 Citrullus lanatus HOM05D005302 ORTHO05D006422 2.3e-202 709.1 471 70.5
unitig_32.g11070 Utricularia gibba HOM05D005302 ORTHO05D006422 6.7e-202 707.6 498 66.9
Os02g0276500 Oryza sativa ssp. japonica HOM05D005302 ORTHO05D006422 4.0e-199 698.4 427 72.8
Cpa.g.sc7.259 Carica papaya HOM05D005302 ORTHO05D006422 1.5e-193 679.9 378 81.2
Nitab4.5_0000513g0060 Nicotiana tabacum HOM05D005302 ORTHO05D006422 3.3e-193 678.7 509 64.0
Oeu036363.2 Olea europaea HOM05D005302 ORTHO05D006422 3.3e-193 678.7 452 72.6
CDE08G0186 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 6.3e-192 674.5 465 65.4
THA.LOC104803808 Tarenaya hassleriana HOM05D005302 ORTHO05D006422 1.1e-191 673.7 416 75.0
LjContig00226g0022694 Lotus japonicus HOM05D005302 ORTHO05D006422 6.9e-191 671.0 380 78.9
LjContig00518g0000858 Lotus japonicus HOM05D005302 ORTHO05D006422 6.9e-191 671.0 380 78.9
MBI04_g05261_MAGBIO Magnolia biondii HOM05D005302 ORTHO05D006422 6.9e-191 671.0 554 58.8
CDE05G0893 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 1.4e-188 663.3 472 63.8
ATR0315G120 Amborella trichopoda HOM05D005302 ORTHO05D006422 2.5e-188 662.5 459 65.4
Hund19525 Selenicereus undatus HOM05D005302 ORTHO05D006422 6.3e-184 647.9 467 67.0
Sc23g0005290 Simmondsia chinensis HOM05D005302 ORTHO05D006422 1.1e-183 647.1 367 77.9
Lj1g0000494 Lotus japonicus HOM05D005302 ORTHO05D006422 4.5e-182 641.7 380 77.1
AUR62041718 Chenopodium quinoa HOM05D005302 ORTHO05D006422 1.7e-181 639.8 443 67.7
Cfa013434 Carpinus fangiana HOM05D005302 ORTHO05D006422 2.5e-180 636.0 353 81.0
Cfa013357 Carpinus fangiana HOM05D005302 ORTHO05D006422 4.8e-176 621.7 506 60.7
Ah.16g105570 Amaranthus hybridus HOM05D005302 ORTHO05D006422 3.8e-173 612.1 375 74.4
Lj1g0015489 Lotus japonicus HOM05D005302 ORTHO05D006422 5.0e-173 611.7 425 68.7
HPP92_005269 Vanilla planifolia HOM05D005302 ORTHO05D006422 1.6e-171 606.7 461 62.7
Cfa013356 Carpinus fangiana HOM05D005302 ORTHO05D006422 1.5e-169 600.1 325 81.2
AagrBONN_evm.TU.Sc2ySwM_368.1981 Anthoceros agrestis HOM05D005302 ORTHO05D006422 7.4e-169 597.8 417 64.5
Haze_21992 Corylus avellana HOM05D005302 ORTHO05D006422 9.1e-167 590.9 621 51.9
Pp3c7_470 Physcomitrium patens HOM05D005302 ORTHO05D006422 1.2e-166 590.5 461 60.3
vmacro11066 Vaccinium macrocarpon HOM05D005302 ORTHO05D006422 4.5e-166 588.6 408 68.9
Mapoly0027s0036 Marchantia polymorpha HOM05D005302 ORTHO05D006422 5.7e-161 571.6 429 59.7
Lj1g0026118 Lotus japonicus HOM05D005302 ORTHO05D006422 1.0e-154 550.8 426 63.6
Pp3c20_5100 Physcomitrium patens HOM05D005302 ORTHO05D006422 1.1e-151 540.8 455 56.3
SMO351G0603 Selaginella moellendorffii HOM05D005302 ORTHO05D006422 8.0e-147 524.6 396 58.6
Zm00001eb237270 Zea mays HOM05D005302 ORTHO05D006422 1.3e-144 517.3 321 69.8
CBR_g222 Chara braunii HOM05D005302 ORTHO05D006422 1.5e-137 493.8 427 55.0
Cc07_g15020 Coffea canephora HOM05D005302 ORTHO05D006422 1.5e-132 477.2 270 78.1
Hma1.2p1_1884F.1_g306470 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 8.6e-125 451.4 252 79.8
Lj7A704G80 Lonicera japonica HOM05D005302 ORTHO05D006422 8.1e-107 391.7 218 79.8
Cre01.g013801 Chlamydomonas reinhardtii HOM05D005302 ORTHO05D006422 4.9e-104 382.5 454 42.3
Hma1.2p1_1884F.1_g306480 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 1.5e-84 317.8 184 78.8
Lj7A704G81 Lonicera japonica HOM05D005302 ORTHO05D006422 1.0e-77 295.0 162 80.2
MCO11G337 Micromonas commoda HOM05D005302 ORTHO05D006422 1.1e-76 291.6 424 41.3
Hma1.2p1_0393F.1_g143070 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 2.0e-65 254.2 148 77.0
CDE05G2043 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 6.1e-62 242.7 404 37.1
FAN24G1627 Fragaria x ananassa HOM05D005302 ORTHO05D006422 3.9e-61 240.0 118 95.8
Glyma.04G082300 Glycine max HOM05D005302 ORTHO05D006422 4.8e-59 233.0 158 70.3
Hma1.2p1_0393F.1_g143090 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 1.4e-58 231.5 171 67.8
SEGI_29042 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 2.5e-55 220.7 110 82.7
SEGI_31241 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 2.2e-48 197.6 148 58.1
Sabra18G0041600 Salix brachista HOM05D005302 ORTHO05D006422 6.1e-46 189.5 111 76.6
Potri.006G240100 Populus trichocarpa HOM05D005302 ORTHO05D006422 1.2e-41 175.3 185 51.4
SEGI_07805 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 4.9e-35 153.3 132 56.1
arahy.Tifrunner.gnm1.ann1.B6YE6K Arachis hypogaea HOM05D005302 ORTHO05D006422 5.9e-33 146.4 188 44.1
Sabra18G0041700 Salix brachista HOM05D005302 ORTHO05D006422 5.4e-18 96.7 60 66.7
CDE05G1694 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 9.2e-18 95.9 61 65.6
BcaC09g52073 Brassica carinata HOM05D002602 ORTHO05D002661 1.7e-08 65.1 41 70.7


User provided reference genes

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