Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0305941 Rosa chinensis HOM05D004021 ORTHO05D003767 0.0e+00 2573.1 1279 100.0
FAN15G2992 Fragaria x ananassa HOM05D004021 ORTHO05D003767 0.0e+00 2189.8 1283 86.0
FAN20G2231 Fragaria x ananassa HOM05D004021 ORTHO05D003767 0.0e+00 2186.8 1283 86.1
FvH4_2g35880 Fragaria vesca HOM05D004021 ORTHO05D003767 0.0e+00 2178.7 1283 86.1
FAN27G1714 Fragaria x ananassa HOM05D004021 ORTHO05D003767 0.0e+00 2172.9 1283 85.9
Prupe.1G450900 Prunus persica HOM05D004021 ORTHO05D003767 0.0e+00 1396.3 1304 60.6
MD08G1116300 Malus domestica HOM05D004021 ORTHO05D003767 0.0e+00 1144.0 1305 53.9
MD15G1096000 Malus domestica HOM05D004021 ORTHO05D003767 1.3e-284 983.8 1075 55.9
Haze_21872 Corylus avellana HOM05D004021 ORTHO05D003767 1.2e-258 897.5 1373 42.6
Cfa013353 Carpinus fangiana HOM05D004021 ORTHO05D003767 1.5e-258 897.1 1320 43.7
QL12p029472 Quercus lobata HOM05D004021 ORTHO05D003767 4.5e-250 869.0 1330 43.1
CANSAT25G3821 Cannabis sativa HOM05D004021 ORTHO05D003767 1.2e-242 844.3 1365 41.8
CiPaw.07G205800 Carya illinoinensis HOM05D004021 ORTHO05D003767 1.6e-234 817.4 1333 41.3
Potri.006G240500 Populus trichocarpa HOM05D004021 ORTHO05D003767 1.5e-224 784.3 1313 40.6
Manes.16G071666 Manihot esculenta HOM05D004021 ORTHO05D003767 6.1e-223 778.9 1323 41.2
Sabra06G0188100 Salix brachista HOM05D004021 ORTHO05D003767 6.8e-222 775.4 1309 41.0
Thecc.09G042000 Theobroma cacao HOM05D004021 ORTHO05D003767 1.5e-221 774.2 1317 39.8
Duzib187G0651 Durio zibethinus HOM05D004021 ORTHO05D003767 1.6e-218 764.2 1296 40.0
Duzib150G1483 Durio zibethinus HOM05D004021 ORTHO05D003767 2.3e-214 750.4 1316 39.0
FAN20G1338 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.5e-213 747.7 458 84.3
FAN02G4319 Fragaria x ananassa HOM05D004021 ORTHO05D003767 2.0e-213 747.3 460 83.9
FAN09G3084 Fragaria x ananassa HOM05D004021 ORTHO05D003767 2.6e-213 746.9 458 84.3
Potri.018G039500 Populus trichocarpa HOM05D004021 ORTHO05D003767 3.0e-209 733.4 1316 38.7
Sabra18G0039500 Salix brachista HOM05D004021 ORTHO05D003767 2.0e-205 720.7 1319 38.5
COL.COLO4_18677 Corchorus olitorius HOM05D004021 ORTHO05D003767 5.8e-205 719.2 1310 38.4
CiPaw.08G024400 Carya illinoinensis HOM05D004021 ORTHO05D003767 1.6e-202 711.1 1316 39.7
Ciclev10007267m.g Citrus clementina HOM05D004021 ORTHO05D003767 5.8e-197 692.6 1317 38.6
Dinv30267 Davidia involucrata HOM05D004021 ORTHO05D003767 1.3e-196 691.4 1327 38.3
Gorai.001G027600 Gossypium raimondii HOM05D004021 ORTHO05D003767 1.7e-196 691.0 1296 37.7
Gohir.A07G023000 Gossypium hirsutum HOM05D004021 ORTHO05D003767 4.9e-196 689.5 1296 37.5
Duzib168G2343 Durio zibethinus HOM05D004021 ORTHO05D003767 3.0e-193 680.2 1261 37.0
Dinv14242 Davidia involucrata HOM05D004021 ORTHO05D003767 3.6e-191 673.3 1356 37.6
Gohir.A07G023100 Gossypium hirsutum HOM05D004021 ORTHO05D003767 5.8e-189 666.0 1289 37.5
Gorai.001G027700 Gossypium raimondii HOM05D004021 ORTHO05D003767 9.3e-187 658.7 1289 37.1
Gohir.D07G026700 Gossypium hirsutum HOM05D004021 ORTHO05D003767 8.7e-185 652.1 1294 37.0
Gohir.D07G026600 Gossypium hirsutum HOM05D004021 ORTHO05D003767 5.8e-181 639.4 1253 36.6
FAN20G0872 Fragaria x ananassa HOM05D004021 ORTHO05D003767 4.3e-176 623.2 457 73.1
FAN13G2039 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.3e-161 575.1 324 89.5
TAR383G0364 Trochodendron aralioides HOM05D004021 ORTHO05D003767 1.3e-148 531.9 1432 32.2
TWI63G0612 Tripterygium wilfordii HOM05D004021 ORTHO05D003767 8.2e-135 486.1 1283 31.6
Lj1g0012897 Lotus japonicus HOM05D004021 ORTHO05D003767 1.7e-132 478.4 1320 32.6
Actinidia14666 Actinidia chinensis HOM05D004021 ORTHO05D003767 1.8e-129 468.4 1323 31.7
Glyma.06G083500 Glycine max HOM05D004021 ORTHO05D003767 1.8e-126 458.4 1303 32.0
Phvul.009G107600 Phaseolus vulgaris HOM05D004021 ORTHO05D003767 2.7e-125 454.5 1310 32.0
Sed0007846 Sechium edule HOM05D004021 ORTHO05D003767 7.7e-125 453.0 1295 32.5
Psat5g022840 Pisum sativum HOM05D004021 ORTHO05D003767 2.2e-124 451.4 1306 32.2
CSS0009602 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 1.5e-123 448.7 1350 31.4
VMungo1309G0329 Vigna mungo HOM05D004021 ORTHO05D003767 1.5e-123 448.7 1318 31.0
Psat5g022920 Pisum sativum HOM05D004021 ORTHO05D003767 2.1e-122 444.9 1312 31.8
Glyma.04G081800 Glycine max HOM05D004021 ORTHO05D003767 2.7e-122 444.5 1307 32.0
MELO3C003457.2 Cucumis melo HOM05D004021 ORTHO05D003767 1.4e-121 442.2 1308 31.7
Ca_15608_v3 Cicer arietinum L. HOM05D004021 ORTHO05D003767 2.0e-120 438.3 1292 32.0
TPR.G1392 Trifolium pratense HOM05D004021 ORTHO05D003767 3.4e-120 437.6 1324 31.3
arahy.Tifrunner.gnm1.ann1.QM1LQ0 Arachis hypogaea HOM05D004021 ORTHO05D003767 4.4e-120 437.2 1310 31.5
FAN05G2999 Fragaria x ananassa HOM05D004021 ORTHO05D003767 9.1e-118 429.5 283 79.9
GSVIVG01035651001 Vitis vinifera HOM05D004021 ORTHO05D003767 7.7e-117 426.4 1043 33.7
Medtr3g110132 Medicago truncatula HOM05D004021 ORTHO05D003767 2.3e-116 424.9 1310 30.8
Lalb_Chr01g0011141 Lupinus albus HOM05D004021 ORTHO05D003767 2.8e-114 417.9 1304 30.3
CsaV3_3G048630 Cucumis sativus L. HOM05D004021 ORTHO05D003767 4.0e-113 414.1 1287 31.0
Medtr3g110082 Medicago truncatula HOM05D004021 ORTHO05D003767 2.2e-111 408.3 1309 30.5
Lalb_Chr11g0064441 Lupinus albus HOM05D004021 ORTHO05D003767 1.9e-107 395.2 1292 30.2
Lalb_Chr08g0243171 Lupinus albus HOM05D004021 ORTHO05D003767 4.0e-105 387.5 1309 29.1
Lalb_Chr11g0064431 Lupinus albus HOM05D004021 ORTHO05D003767 5.7e-104 383.6 1278 30.4
ClCG11G015210 Citrullus lanatus HOM05D004021 ORTHO05D003767 1.8e-102 378.6 1124 32.0
Actinidia15734 Actinidia chinensis HOM05D004021 ORTHO05D003767 8.6e-100 369.8 1300 29.2
Atru.chr7.2140 Acer truncatum HOM05D004021 ORTHO05D003767 2.4e-94 351.7 825 35.2
Lj8A589G31 Lonicera japonica HOM05D004021 ORTHO05D003767 1.2e-93 349.4 1320 28.5
Rhsim07G0152700 Rhododendron simsii HOM05D004021 ORTHO05D003767 1.9e-91 342.0 1317 29.3
THA.LOC104814779 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 2.5e-91 341.7 1297 29.1
Nn2g11674 Nelumbo nucifera HOM05D004021 ORTHO05D003767 2.8e-90 338.2 1409 28.0
THA.LOC104799199 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 1.4e-89 335.9 1314 29.0
TAR626G0792 Trochodendron aralioides HOM05D004021 ORTHO05D003767 2.6e-88 331.6 564 39.7
Nn3g18104 Nelumbo nucifera HOM05D004021 ORTHO05D003767 3.2e-86 324.7 1319 27.9
Eucgr.C02901 Eucalyptus grandis HOM05D004021 ORTHO05D003767 2.6e-80 305.1 1279 27.3
PGR044G0442 Punica granatum HOM05D004021 ORTHO05D003767 4.4e-80 304.3 1336 29.1
Sed0002796 Sechium edule HOM05D004021 ORTHO05D003767 1.7e-79 302.4 1268 28.0
MELO3C011152.2 Cucumis melo HOM05D004021 ORTHO05D003767 2.9e-79 301.6 1296 27.5
ClCG08G012320 Citrullus lanatus HOM05D004021 ORTHO05D003767 7.8e-77 293.5 1268 28.4
vmacro05366 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 7.3e-75 287.0 1362 26.9
CsaV3_2G030990 Cucumis sativus L. HOM05D004021 ORTHO05D003767 1.6e-74 285.8 1297 26.7
Aa31LG3G15670 Aethionema arabicum HOM05D004021 ORTHO05D003767 3.1e-73 281.6 1272 26.7
Cpa.g.sc7.256 Carica papaya HOM05D004021 ORTHO05D003767 9.3e-70 270.0 395 42.0
AL6G22200 Arabidopsis lyrata HOM05D004021 ORTHO05D003767 5.6e-67 260.8 1286 26.5
Carub.0006s1000 Capsella rubella HOM05D004021 ORTHO05D003767 3.6e-66 258.1 1279 25.6
AT5G11530 Arabidopsis thaliana HOM05D004021 ORTHO05D003767 3.4e-64 251.5 1272 26.5
Sp6g32070 Schrenkiella parvula HOM05D004021 ORTHO05D003767 1.9e-62 245.7 1283 26.3
Nitab4.5_0000664g0250 Nicotiana tabacum HOM05D004021 ORTHO05D003767 3.2e-62 245.0 1294 26.0
MBI01_g30860_MAGBIO Magnolia biondii HOM05D004021 ORTHO05D003767 4.2e-62 244.6 1336 26.2
Thhalv10003568m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 3.5e-61 241.5 1282 26.5
Nitab4.5_0001567g0120 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.3e-58 233.0 1317 25.1
CARHR201690 Cardamine hirsuta HOM05D004021 ORTHO05D003767 6.2e-58 230.7 1274 25.7
Peaxi162Scf00276g00210 Petunia axillaris HOM05D004021 ORTHO05D003767 1.8e-57 229.2 1318 24.4
Nitab4.5_0000664g0210 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.9e-54 219.2 1296 25.8
PGSC0003DMG401018585 Solanum tuberosum HOM05D004021 ORTHO05D003767 4.6e-53 214.5 1323 25.2
Atru.chr7.2139 Acer truncatum HOM05D004021 ORTHO05D003767 3.9e-52 211.5 270 46.3
Cpa.g.sc7.255 Carica papaya HOM05D004021 ORTHO05D003767 4.3e-51 208.0 592 31.4
Eucgr.E03518 Eucalyptus grandis HOM05D004021 ORTHO05D003767 7.4e-51 207.2 723 30.2
Nitab4.5_0001567g0150 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.3e-50 206.5 1269 25.3
CAN.G309.87 Capsicum annuum HOM05D004021 ORTHO05D003767 6.2e-50 204.1 1302 24.0
BcaNung01931 Brassica carinata HOM05D004021 ORTHO05D003767 1.1e-49 203.4 1256 25.2
Aa31LG11G4580 Aethionema arabicum HOM05D004021 ORTHO05D003767 2.6e-48 198.7 1231 24.3
DCAR_007709 Daucus carota HOM05D004021 ORTHO05D003767 3.2e-46 191.8 1269 25.2
BolC3t13094H Brassica oleracea HOM05D004021 ORTHO05D003767 8.7e-44 183.7 1271 24.0
Dinv38014 Davidia involucrata HOM05D004021 ORTHO05D003767 2.5e-43 182.2 1074 26.0
BcaC03g13370 Brassica carinata HOM05D004021 ORTHO05D003767 5.7e-43 181.0 1249 24.3
C02p05090 Brassica napus HOM05D004021 ORTHO05D003767 5.7e-43 181.0 1249 24.3
BolC2t06463H Brassica oleracea HOM05D004021 ORTHO05D003767 8.2e-42 177.2 1249 23.9
BolC7t44742H Brassica oleracea HOM05D004021 ORTHO05D003767 1.1e-41 176.8 1263 25.2
BcaNung03924 Brassica carinata HOM05D004021 ORTHO05D003767 1.4e-41 176.4 1263 24.9
Solyc11g071250.3 Solanum lycopersicum HOM05D004021 ORTHO05D003767 1.4e-41 176.4 1333 23.3
C07p42110 Brassica napus HOM05D004021 ORTHO05D003767 1.8e-41 176.0 1263 25.1
BraA02t05084Z Brassica rapa HOM05D004021 ORTHO05D003767 9.0e-41 173.7 1246 23.8
CSS0003638 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 9.0e-41 173.7 1321 23.7
A06p36400 Brassica napus HOM05D004021 ORTHO05D003767 3.4e-40 171.8 1266 24.4
Oeu031555.1 Olea europaea HOM05D004021 ORTHO05D003767 4.5e-40 171.4 1304 24.2
Sopen11g028940 Solanum pennellii HOM05D004021 ORTHO05D003767 5.9e-40 171.0 1333 23.3
A02p01040 Brassica napus HOM05D004021 ORTHO05D003767 7.7e-40 170.6 1246 23.7
Hund03406 Selenicereus undatus HOM05D012164 ORTHO05D003767 7.7e-40 170.6 1352 23.3
SHI18661 Sapria himalayana HOM05D004021 ORTHO05D003767 1.0e-39 170.2 1221 24.7
BraA03t09842Z Brassica rapa HOM05D004021 ORTHO05D003767 1.9e-38 166.0 1270 23.4
arahy.Tifrunner.gnm1.ann1.E545QA Arachis hypogaea HOM05D004021 ORTHO05D003767 3.2e-38 165.2 1278 23.6
BraA06t26563Z Brassica rapa HOM05D004021 ORTHO05D003767 3.2e-38 165.2 1254 24.6
BcaB01g05477 Brassica carinata HOM05D004021 ORTHO05D003767 2.1e-37 162.5 1272 24.2
Lj8P589T23 Lonicera japonica HOM05D004021 ORTHO05D003767 5.1e-36 157.9 578 29.9
Oeu012193.1 Olea europaea HOM05D004021 ORTHO05D003767 8.8e-36 157.1 1279 24.3
Dinv30474 Davidia involucrata HOM05D004021 ORTHO05D003767 2.8e-34 152.1 714 27.9
Rhsim08G0224000 Rhododendron simsii HOM05D004021 ORTHO05D003767 4.8e-34 151.4 998 26.0
Sc09g0009160 Simmondsia chinensis HOM05D012164 ORTHO05D003767 4.1e-33 148.3 1298 23.8
PSO782G1327 Papaver somniferum HOM05D004021 ORTHO05D003767 6.9e-33 147.5 1218 23.9
vmacro18883 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 1.2e-29 136.7 1265 23.1
SalBow1G4226 Salvia bowleyana HOM05D004021 ORTHO05D003767 7.4e-27 127.5 1316 22.2
MSTRG.1655 Avicennia marina HOM05D004021 ORTHO05D003767 2.8e-26 125.6 1298 23.6
Peaxi162Scf00657g00058 Petunia axillaris HOM05D004021 ORTHO05D003767 2.8e-26 125.6 1353 22.2
Cpa.g.sc7.254 Carica papaya HOM05D004021 ORTHO05D003767 7.0e-25 120.9 104 58.7
Thhalv10015703m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 4.5e-24 118.2 1255 23.0
Lalb_Chr22g0352261 Lupinus albus HOM05D004021 ORTHO05D003767 5.9e-24 117.9 460 26.5
Nitab4.5_0002178g0010 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.0e-23 117.1 620 24.2
Lalb_Chr24g0396931 Lupinus albus HOM05D004021 ORTHO05D003767 1.3e-23 116.7 1320 21.9
TAR626G0813 Trochodendron aralioides HOM05D004021 ORTHO05D003767 2.2e-23 115.9 239 36.0
Hund19530 Selenicereus undatus HOM05D012164 ORTHO05D003767 5.0e-23 114.8 1283 22.5
ECA233G1986 Erigeron canadensis HOM05D004021 ORTHO05D003767 1.9e-22 112.8 1250 23.9
EL10Ac2g04051 Beta vulgaris HOM05D012164 ORTHO05D003767 1.4e-20 106.7 1079 23.7
Lalb_Chr14g0372341 Lupinus albus HOM05D004021 ORTHO05D003767 3.0e-20 105.5 1025 22.0
Atru.chr7.2138 Acer truncatum HOM05D004021 ORTHO05D003767 5.2e-20 104.8 109 51.4
C03p05810 Brassica napus HOM05D000602 ORTHO05D006896 1.1e-19 103.6 820 22.7
AUR62041723 Chenopodium quinoa HOM05D012164 ORTHO05D003767 8.2e-18 97.4 1006 22.4
Lj8A589T33 Lonicera japonica HOM05D004021 ORTHO05D003767 1.4e-17 96.7 212 31.6
BcaNung04838 Brassica carinata HOM05D004021 ORTHO05D003767 1.8e-17 96.3 254 33.1
Aqoxy7G01578 Aquilegia oxysepala HOM05D065736 ORTHO05D038511 9.1e-17 94.0 828 21.7
Migut.E01516 Erythranthe guttata HOM05D004021 ORTHO05D003767 9.1e-17 94.0 120 42.5
Migut.A00223 Erythranthe guttata HOM05D004021 ORTHO05D003767 2.0e-16 92.8 111 44.1
A03p05080 Brassica napus HOM05D000602 ORTHO05D006896 2.6e-16 92.4 821 22.2
Nitab4.5_0000500g0270 Nicotiana tabacum HOM05D004021 ORTHO05D003767 5.9e-16 91.3 666 23.3
Lj4g0004076 Lotus japonicus HOM05D032889 ORTHO05D003767 1.3e-15 90.1 87 46.0
SGA_v2.0_scaffold169G38653 Striga asiatica HOM05D004021 ORTHO05D003767 1.9e-14 86.3 102 47.1
MSTRG.14021 Avicennia marina HOM05D004021 ORTHO05D003767 2.1e-13 82.8 94 44.7
DCAR_003118 Daucus carota HOM05D004021 ORTHO05D003767 2.7e-13 82.4 1129 21.8
AUR62009309 Chenopodium quinoa HOM05D012164 ORTHO05D003767 3.6e-13 82.0 1016 22.7
Lj8P589T28 Lonicera japonica HOM05D004021 ORTHO05D003767 6.1e-13 81.3 371 26.7
SalBow4G0344 Salvia bowleyana HOM05D004021 ORTHO05D003767 2.3e-12 79.3 120 39.2
SGA_v2.0_scaffold163G38081 Striga asiatica HOM05D004021 ORTHO05D003767 3.0e-12 79.0 119 37.8
unitig_578.g16592 Utricularia gibba HOM05D004021 ORTHO05D003767 8.8e-12 77.4 152 35.5
Aqoxy4G01254 Aquilegia oxysepala HOM05D065736 ORTHO05D038511 1.5e-11 76.6 412 24.5
Cc08_g09190 Coffea canephora HOM05D004021 ORTHO05D003767 2.0e-11 76.3 567 22.8
TAR626G1566 Trochodendron aralioides HOM05D004021 ORTHO05D003767 2.0e-11 76.3 367 26.2
ATR0315G010 Amborella trichopoda HOM05D004021 ORTHO05D003767 2.6e-11 75.9 132 32.6
Oeu015740.1 Olea europaea HOM05D004021 ORTHO05D003767 6.3e-10 71.2 273 28.6
Lalb_Chr22g0352251 Lupinus albus HOM05D004021 ORTHO05D003767 8.2e-10 70.9 525 21.7
SEGI_07029 Sequoiadendron giganteum HOM05D004021 ORTHO05D003767 4.1e-09 68.6 66 42.4
HanXRQChr09g0276591 Helianthus annuus HOM05D004021 ORTHO05D003767 7.0e-09 67.8 1199 21.3
unitig_26.g9789 Utricularia gibba HOM05D004021 ORTHO05D003767 2.0e-08 66.2 103 38.8
Glyma.17G195000 Glycine max HOM05D004021 ORTHO05D003767 2.7e-08 65.9 355 24.8
Ah.10g035100 Amaranthus hybridus HOM05D012164 ORTHO05D003767 3.5e-08 65.5 1276 22.6
CDE05G1167 Ceratophyllum demersum HOM05D004021 ORTHO05D003767 3.5e-08 65.5 93 38.7
HPP92_026866 Vanilla planifolia HOM05D004021 ORTHO05D003767 3.5e-08 65.5 166 27.1
CDE05G1483 Ceratophyllum demersum HOM05D050580 ORTHO05D003767 5.9e-08 64.7 93 37.6
Lsat_1_v5_gn_4_94561 Lactuca sativa HOM05D004021 ORTHO05D003767 5.9e-08 64.7 1249 21.0
Lsat_1_v5_gn_6_64101 Lactuca sativa HOM05D004021 ORTHO05D003767 1.0e-07 63.9 1236 22.0
Ah.16g105370 Amaranthus hybridus HOM05D012164 ORTHO05D003767 5.0e-07 61.6 66 45.5
Os01g0229300 Oryza sativa ssp. japonica HOM05D018893 ORTHO05D020945 3.2e-06 58.9 79 38.0
SEGI_32539 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 7.2e-06 57.8 107 33.6
SEGI_37840 Sequoiadendron giganteum HOM05D028836 ORTHO05D003767 7.2e-06 57.8 61 39.3


User provided reference genes

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