Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0305881 Rosa chinensis HOM05D005681 ORTHO05D007274 1.2e-155 553.1 280 100.0
FvH4_2g35990 Fragaria vesca HOM05D005681 ORTHO05D007274 2.7e-139 498.8 281 90.4
FAN20G2636 Fragaria x ananassa HOM05D005681 ORTHO05D007274 3.9e-138 495.0 281 90.7
MD15G1096600 Malus domestica HOM05D005681 ORTHO05D007274 1.5e-129 466.5 280 83.6
Prupe.1G451500 Prunus persica HOM05D005681 ORTHO05D007274 3.6e-128 461.8 280 82.9
FAN15G0799 Fragaria x ananassa HOM05D004668 ORTHO05D006460 4.4e-126 454.9 257 90.3
TWI32G1178 Tripterygium wilfordii HOM05D005681 ORTHO05D007274 5.1e-122 441.4 280 80.4
Gorai.010G110300 Gossypium raimondii HOM05D005681 ORTHO05D007274 4.3e-121 438.3 280 79.6
Duzib150G0332 Durio zibethinus HOM05D005681 ORTHO05D007274 4.8e-120 434.9 280 79.3
Gohir.A06G095700 Gossypium hirsutum HOM05D005681 ORTHO05D007274 3.1e-119 432.2 280 78.9
CiPaw.08G024200 Carya illinoinensis HOM05D005681 ORTHO05D007274 9.0e-119 430.6 280 77.1
Hma1.2p1_0140F.1_g063453 Hydrangea macrophylla HOM05D005681 ORTHO05D007274 7.6e-118 427.6 280 78.9
Hma1.2p1_0140F.1_g063456 Hydrangea macrophylla HOM05D005681 ORTHO05D007274 7.6e-118 427.6 280 78.9
Gorai.009G051200 Gossypium raimondii HOM05D005681 ORTHO05D007274 1.3e-117 426.8 280 77.1
TWI34G0866 Tripterygium wilfordii HOM05D005681 ORTHO05D007274 1.3e-117 426.8 280 78.2
Lj1g0012145 Lotus japonicus HOM05D005681 ORTHO05D007274 8.4e-117 424.1 280 77.1
Gohir.A05G047800 Gossypium hirsutum HOM05D005681 ORTHO05D007274 1.1e-116 423.7 280 76.4
Gohir.D05G049900 Gossypium hirsutum HOM05D005681 ORTHO05D007274 1.4e-116 423.3 280 76.8
Thecc.09G041100 Theobroma cacao HOM05D005681 ORTHO05D007274 2.4e-116 422.5 280 77.5
Dinv30262 Davidia involucrata HOM05D005681 ORTHO05D007274 3.2e-116 422.2 280 77.9
Ciclev10009066m.g Citrus clementina HOM05D005681 ORTHO05D007274 7.1e-116 421.0 280 75.7
THA.LOC104803765 Tarenaya hassleriana HOM05D005681 ORTHO05D007274 7.1e-116 421.0 282 76.6
MELO3C011155.2 Cucumis melo HOM05D005681 ORTHO05D007274 1.6e-115 419.9 281 76.5
Manes.03G061300 Manihot esculenta HOM05D005681 ORTHO05D007274 3.5e-115 418.7 280 74.6
Atru.chr7.2148 Acer truncatum HOM05D005681 ORTHO05D007274 4.6e-115 418.3 278 75.9
ClCG08G012350 Citrullus lanatus HOM05D005681 ORTHO05D007274 7.9e-115 417.5 280 76.4
GSVIVG01035659001 Vitis vinifera HOM05D005681 ORTHO05D007274 3.0e-114 415.6 280 75.0
Cfa013349 Carpinus fangiana HOM05D004668 ORTHO05D006460 8.7e-114 414.1 279 73.8
PGR044G0773 Punica granatum HOM05D005681 ORTHO05D007274 1.5e-113 413.3 280 75.0
MD08G1117000 Malus domestica HOM05D005681 ORTHO05D007274 2.5e-113 412.5 275 78.2
TAR626G1886 Trochodendron aralioides HOM05D005681 ORTHO05D007274 1.6e-112 409.8 280 74.6
Glyma.04G080900 Glycine max HOM05D005681 ORTHO05D007274 8.1e-112 407.5 280 75.7
Glyma.06G082600 Glycine max HOM05D005681 ORTHO05D007274 8.1e-112 407.5 280 75.7
Ca_15613_v3 Cicer arietinum L. HOM05D005681 ORTHO05D007274 1.4e-111 406.8 280 74.6
Eucgr.C02898 Eucalyptus grandis HOM05D005681 ORTHO05D007274 1.4e-111 406.8 282 74.8
Sc23g0005990 Simmondsia chinensis HOM05D005681 ORTHO05D007274 5.3e-111 404.8 280 73.2
COL.COLO4_18685 Corchorus olitorius HOM05D005681 ORTHO05D007274 6.9e-111 404.4 301 70.1
Psat0s2259g0040 Pisum sativum HOM05D005681 ORTHO05D007274 1.5e-110 403.3 280 73.2
TPR.G1346 Trifolium pratense HOM05D005681 ORTHO05D007274 2.0e-110 402.9 281 73.7
Sed0026422 Sechium edule HOM05D005681 ORTHO05D007274 1.0e-109 400.6 280 72.5
Dinv14236 Davidia involucrata HOM05D005681 ORTHO05D007274 2.9e-109 399.1 281 74.7
VMungo1309G2636 Vigna mungo HOM05D005681 ORTHO05D007274 2.9e-109 399.1 280 74.3
Lalb_Chr08g0243221 Lupinus albus HOM05D005681 ORTHO05D007274 3.8e-109 398.7 281 71.9
Sed0017759 Sechium edule HOM05D005681 ORTHO05D007274 1.4e-108 396.7 280 71.4
Thhalv10025880m.g Eutrema salsugineum HOM05D005681 ORTHO05D007274 2.5e-108 396.0 281 73.7
Peaxi162Scf00523g00017 Petunia axillaris HOM05D005681 ORTHO05D007274 2.5e-108 396.0 286 70.6
arahy.Tifrunner.gnm1.ann1.M4G12U Arachis hypogaea HOM05D005681 ORTHO05D007274 3.2e-108 395.6 280 71.8
CSS0039623 Camellia sinensis var. sinensis HOM05D005681 ORTHO05D007274 3.2e-108 395.6 282 72.7
Carub.0007s0774 Capsella rubella HOM05D005681 ORTHO05D007274 3.2e-108 395.6 281 74.0
Potri.006G241200 Populus trichocarpa HOM05D005681 ORTHO05D007274 5.5e-108 394.8 280 73.9
Phvul.009G107000 Phaseolus vulgaris HOM05D005681 ORTHO05D007274 7.1e-108 394.4 279 73.5
Solyc08g068350.3 Solanum lycopersicum HOM05D005681 ORTHO05D007274 7.1e-108 394.4 291 69.1
Actinidia31229 Actinidia chinensis HOM05D005681 ORTHO05D007274 9.3e-108 394.0 281 71.9
Nn3g18081 Nelumbo nucifera HOM05D005681 ORTHO05D007274 9.3e-108 394.0 279 71.3
Medtr3g110075 Medicago truncatula HOM05D005681 ORTHO05D007274 1.6e-107 393.3 280 72.9
QL12p029589 Quercus lobata HOM05D005681 ORTHO05D007274 2.1e-107 392.9 280 70.0
Nitab4.5_0000052g0240 Nicotiana tabacum HOM05D005681 ORTHO05D007274 2.7e-107 392.5 290 69.0
EL10Ac2g04057 Beta vulgaris HOM05D005681 ORTHO05D007274 7.9e-107 391.0 282 70.6
AT4G32750 Arabidopsis thaliana HOM05D005681 ORTHO05D007274 2.3e-106 389.4 282 73.0
Hund03415 Selenicereus undatus HOM05D005681 ORTHO05D007274 2.3e-106 389.4 280 71.1
Sopen08g022200 Solanum pennellii HOM05D005681 ORTHO05D007274 2.3e-106 389.4 294 68.4
arahy.Tifrunner.gnm1.ann1.Z4VD8H Arachis hypogaea HOM05D005681 ORTHO05D007274 3.0e-106 389.0 280 70.4
CARHR240740 Cardamine hirsuta HOM05D005681 ORTHO05D007274 3.9e-106 388.7 281 73.3
MBI01_g15703_MAGBIO Magnolia biondii HOM05D005681 ORTHO05D007274 3.9e-106 388.7 282 71.6
Aa31LG2G17210 Aethionema arabicum HOM05D005681 ORTHO05D007274 8.7e-106 387.5 279 74.6
Cc08_g09110 Coffea canephora HOM05D005681 ORTHO05D007274 8.7e-106 387.5 287 69.7
Actinidia13315 Actinidia chinensis HOM05D005681 ORTHO05D007274 1.1e-105 387.1 281 71.5
PGSC0003DMG400010842 Solanum tuberosum HOM05D005681 ORTHO05D007274 1.1e-105 387.1 294 68.4
Lsat_1_v5_gn_5_33341 Lactuca sativa HOM05D005681 ORTHO05D007274 1.5e-105 386.7 287 69.7
Nitab4.5_0011506g0010 Nicotiana tabacum HOM05D005681 ORTHO05D007274 1.5e-105 386.7 290 68.6
Sp7g30510 Schrenkiella parvula HOM05D005681 ORTHO05D007274 1.5e-105 386.7 283 72.4
AUR62009315 Chenopodium quinoa HOM05D005681 ORTHO05D007274 3.3e-105 385.6 280 70.7
Ah.10g035130 Amaranthus hybridus HOM05D005681 ORTHO05D007274 4.3e-105 385.2 280 70.0
AL7G19000 Arabidopsis lyrata HOM05D005681 ORTHO05D007274 4.3e-105 385.2 281 73.0
Haze_21866 Corylus avellana HOM05D005681 ORTHO05D007274 2.1e-104 382.9 356 59.0
BcaB03g12761 Brassica carinata HOM05D005681 ORTHO05D007274 2.8e-104 382.5 281 70.8
CAN.G21.34 Capsicum annuum HOM05D005681 ORTHO05D007274 4.8e-104 381.7 294 67.0
PSO782G3698 Papaver somniferum HOM05D005681 ORTHO05D007274 4.8e-104 381.7 280 69.6
PSO566G0344 Papaver somniferum HOM05D005681 ORTHO05D007274 4.0e-103 378.6 280 69.6
vmacro05364 Vaccinium macrocarpon HOM05D005681 ORTHO05D007274 1.0e-101 374.0 277 69.3
A08p17930 Brassica napus HOM05D005681 ORTHO05D007274 1.3e-101 373.6 282 70.9
BraA08t33745Z Brassica rapa HOM05D005681 ORTHO05D007274 1.3e-101 373.6 282 70.9
Aqoxy7G01593 Aquilegia oxysepala HOM05D005681 ORTHO05D007274 2.2e-101 372.9 280 66.4
SalBow4G0279 Salvia bowleyana HOM05D005681 ORTHO05D007274 2.9e-101 372.5 285 66.3
BolC3t21001H Brassica oleracea HOM05D005681 ORTHO05D007274 4.9e-101 371.7 282 69.9
Rhsim07G0152800 Rhododendron simsii HOM05D005681 ORTHO05D007274 6.5e-101 371.3 275 70.9
C03p87050 Brassica napus HOM05D005681 ORTHO05D007274 8.4e-101 370.9 282 69.9
SGA_v2.0_scaffold243G44291 Striga asiatica HOM05D005681 ORTHO05D007274 1.9e-100 369.8 296 65.5
Sabra06G0188600 Salix brachista HOM05D005681 ORTHO05D007274 2.5e-100 369.4 280 69.3
MSTRG.25900 Avicennia marina HOM05D005681 ORTHO05D007274 1.6e-99 366.7 284 66.2
Potri.018G038600 Populus trichocarpa HOM05D005681 ORTHO05D007274 1.6e-99 366.7 280 68.6
Sabra18G0039000 Salix brachista HOM05D005681 ORTHO05D007274 2.1e-99 366.3 280 68.6
CANSAT80G1365 Cannabis sativa HOM05D005681 ORTHO05D007274 3.5e-99 365.5 279 68.8
Cpa.g.sc78.73 Carica papaya HOM05D005681 ORTHO05D007274 4.6e-99 365.2 434 49.8
ATR0315G043 Amborella trichopoda HOM05D005681 ORTHO05D007274 3.3e-97 359.0 277 68.2
CSS0012406 Camellia sinensis var. sinensis HOM05D005681 ORTHO05D007274 7.4e-97 357.8 269 69.1
Lj7A706G35 Lonicera japonica HOM05D005681 ORTHO05D007274 3.7e-96 355.5 279 67.4
Migut.A00229 Erythranthe guttata HOM05D005681 ORTHO05D007274 9.0e-95 350.9 286 63.3
HPP92_006301 Vanilla planifolia HOM05D005681 ORTHO05D007274 1.5e-94 350.1 279 63.8
HPP92_006306 Vanilla planifolia HOM05D005681 ORTHO05D007274 2.9e-93 345.9 279 63.1
HanXRQChr08g0236281 Helianthus annuus HOM05D005681 ORTHO05D007274 9.4e-92 340.9 270 65.9
Nn2g11688 Nelumbo nucifera HOM05D005681 ORTHO05D007274 1.3e-88 330.5 238 72.3
BcaC09g52069 Brassica carinata HOM05D005681 ORTHO05D007274 4.1e-87 325.5 272 66.5
A01p05570 Brassica napus HOM05D005681 ORTHO05D007274 3.4e-86 322.4 275 65.8
Gohir.D06G095800 Gossypium hirsutum HOM05D005681 ORTHO05D007274 7.2e-84 314.7 206 77.2
Duzib168G1957 Durio zibethinus HOM05D005681 ORTHO05D007274 5.1e-82 308.5 277 61.7
Os02g0272400 Oryza sativa ssp. japonica HOM05D005681 ORTHO05D007274 5.1e-82 308.5 277 57.0
CsaV3_2G031020 Cucumis sativus L. HOM05D005681 ORTHO05D007274 2.0e-81 306.6 202 76.7
ECA246G0085 Erigeron canadensis HOM05D005681 ORTHO05D007274 4.8e-80 302.0 240 67.9
BolC7t46377H Brassica oleracea HOM05D005681 ORTHO05D007274 4.1e-79 298.9 214 73.4
Zm00001eb203450 Zea mays HOM05D005681 ORTHO05D007274 1.1e-76 290.8 279 53.8
Dinv30480 Davidia involucrata HOM05D005681 ORTHO05D007274 2.5e-76 289.7 262 59.5
AUR62043614 Chenopodium quinoa HOM05D005681 ORTHO05D007274 9.1e-71 271.2 280 54.6
AUR62029668 Chenopodium quinoa HOM05D005681 ORTHO05D007274 2.0e-70 270.0 280 54.6
AagrBONN_evm.TU.Sc2ySwM_362.2150 Anthoceros agrestis HOM05D005681 ORTHO05D007274 2.9e-69 266.2 276 50.7
Mapoly0093s0011 Marchantia polymorpha HOM05D005681 ORTHO05D007274 7.2e-68 261.5 276 52.9
Lsat_1_v5_gn_1_49740 Lactuca sativa HOM05D005681 ORTHO05D007274 1.3e-64 250.8 281 49.1
CDE04G0437 Ceratophyllum demersum HOM05D005681 ORTHO05D007274 1.8e-63 246.9 271 49.1
BcaNung03601 Brassica carinata HOM05D005681 ORTHO05D007274 9.1e-63 244.6 257 58.8
Pp3c7_12500 Physcomitrium patens HOM05D005681 ORTHO05D007274 4.5e-62 242.3 271 47.2
DCAR_000748 Daucus carota HOM05D005681 ORTHO05D007274 1.8e-58 230.3 150 74.0
Pp3c2_21260 Physcomitrium patens HOM05D005681 ORTHO05D007274 3.0e-58 229.6 275 48.4
Oeu008286.1 Olea europaea HOM05D005681 ORTHO05D007274 2.6e-57 226.5 152 75.0
SMO347G0207 Selaginella moellendorffii HOM05D005681 ORTHO05D007274 1.3e-56 224.2 273 46.9
Oeu008289.1 Olea europaea HOM05D005681 ORTHO05D007274 5.4e-55 218.8 152 73.0
BcaNung04523 Brassica carinata HOM05D005681 ORTHO05D007274 7.2e-52 208.4 222 56.8
C07p59310 Brassica napus HOM05D005681 ORTHO05D007274 1.6e-51 207.2 269 50.9
BraA01t00528Z Brassica rapa HOM05D005681 ORTHO05D007274 5.2e-50 202.2 148 73.6
MBI01_g30752_MAGBIO Magnolia biondii HOM05D005681 ORTHO05D007274 4.3e-36 156.0 145 59.3
AUR62043618 Chenopodium quinoa HOM05D005681 ORTHO05D007274 2.1e-35 153.7 117 68.4
Oeu012191.1 Olea europaea HOM05D005681 ORTHO05D007274 2.1e-35 153.7 133 60.9
ATR0051G031 Amborella trichopoda HOM05D005681 ORTHO05D007274 4.3e-20 102.8 84 60.7
Oeu031829.2 Olea europaea HOM05D005681 ORTHO05D007274 6.2e-19 99.0 128 44.5
A03p61560 Brassica napus HOM05D005681 ORTHO05D040333 1.7e-16 90.9 244 38.5
BraA03t15198Z Brassica rapa HOM05D005681 ORTHO05D040333 4.8e-11 72.8 180 39.4


User provided reference genes

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