Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0305861 Rosa chinensis HOM05D001115 ORTHO05D011468 1.3e-134 483.0 240 100.0
FvH4_2g36010 Fragaria vesca HOM05D001115 ORTHO05D011468 3.8e-110 401.7 241 84.6
MD15G1096800 Malus domestica HOM05D001115 ORTHO05D011468 1.6e-71 273.5 243 61.7
FAN15G0541 Fragaria x ananassa HOM05D001021 ORTHO05D000894 4.6e-71 271.9 168 81.5
CiPaw.07G206500 Carya illinoinensis HOM05D001115 ORTHO05D011468 3.6e-52 209.1 239 49.8
QL12p026643 Quercus lobata HOM05D001115 ORTHO05D011468 6.9e-51 204.9 247 49.8
QL12p029602 Quercus lobata HOM05D001115 ORTHO05D011468 6.9e-51 204.9 247 49.8
Prupe.1G451700 Prunus persica HOM05D001115 ORTHO05D011468 1.3e-49 200.7 187 59.9
Gohir.D06G095600 Gossypium hirsutum HOM05D001115 ORTHO05D011468 1.6e-47 193.7 242 45.9
Gorai.010G110100 Gossypium raimondii HOM05D001115 ORTHO05D011468 1.6e-47 193.7 242 45.9
Eucgr.C02896 Eucalyptus grandis HOM05D001115 ORTHO05D011468 8.7e-46 188.0 230 48.3
Atru.chr7.2150 Acer truncatum HOM05D001115 ORTHO05D011468 1.9e-45 186.8 240 44.6
Thecc.09G040900 Theobroma cacao HOM05D001115 ORTHO05D011468 3.7e-44 182.6 240 44.2
Cc08_g09090 Coffea canephora HOM05D001115 ORTHO05D011468 1.4e-43 180.6 186 50.5
Ciclev10010490m.g Citrus clementina HOM05D001115 ORTHO05D011468 9.0e-43 177.9 191 51.8
MD08G1117200 Malus domestica HOM05D001115 ORTHO05D011468 1.2e-42 177.6 153 59.5
Nn3g18076 Nelumbo nucifera HOM05D001115 ORTHO05D011468 9.9e-42 174.5 198 46.5
PGR044G2696 Punica granatum HOM05D001115 ORTHO05D011468 9.9e-42 174.5 193 49.7
TWI34G1268 Tripterygium wilfordii HOM05D001115 ORTHO05D011468 3.8e-41 172.6 240 44.2
Actinidia15732 Actinidia chinensis HOM05D001115 ORTHO05D011468 2.7e-39 166.4 188 48.9
Potri.018G038400 Populus trichocarpa HOM05D001115 ORTHO05D011468 5.3e-35 152.1 242 42.6
Potri.006G241400 Populus trichocarpa HOM05D001115 ORTHO05D011468 2.2e-33 146.7 241 41.1
Gohir.A06G095500 Gossypium hirsutum HOM05D001115 ORTHO05D011468 2.9e-33 146.4 243 39.1
Dinv14233 Davidia involucrata HOM05D001115 ORTHO05D011468 3.5e-31 139.4 162 49.4
GSVIVG01035661001 Vitis vinifera HOM05D001115 ORTHO05D011468 1.4e-27 127.5 148 46.6
Manes.03G061200 Manihot esculenta HOM05D001115 ORTHO05D011468 3.8e-25 119.4 191 38.7
Sabra18G0038800 Salix brachista HOM05D001115 ORTHO05D011468 1.2e-23 114.4 240 35.4
Cc06_g18740 Coffea canephora HOM05D001115 ORTHO05D011468 2.1e-23 113.6 131 48.1
vmacro05362 Vaccinium macrocarpon HOM05D001115 ORTHO05D011468 1.2e-18 97.8 185 36.2
ATR0680G167 Amborella trichopoda HOM05D001115 ORTHO05D001023 1.1e-16 91.3 191 29.3
CANSAT78G1646 Cannabis sativa HOM05D001115 ORTHO05D001023 4.2e-16 89.4 190 33.7
Nitab4.5_0002526g0050 Nicotiana tabacum HOM05D001115 ORTHO05D001023 4.2e-16 89.4 210 30.5
Rhsim07G0153200 Rhododendron simsii HOM05D001115 ORTHO05D011468 4.2e-16 89.4 181 33.7
Nitab4.5_0000512g0160 Nicotiana tabacum HOM05D001115 ORTHO05D001023 7.2e-16 88.6 210 30.5
vmacro09277 Vaccinium macrocarpon HOM05D001115 ORTHO05D001023 1.6e-15 87.4 177 33.9
TWI18G0226 Tripterygium wilfordii HOM05D001115 ORTHO05D001023 2.7e-15 86.7 169 33.7
Dinv02169 Davidia involucrata HOM05D001115 ORTHO05D001023 4.7e-15 85.9 174 32.2
Os04g0679900 Oryza sativa ssp. japonica HOM05D001115 ORTHO05D001023 4.7e-15 85.9 177 32.2
Actinidia09860 Actinidia chinensis HOM05D001115 ORTHO05D001023 7.9e-15 85.1 179 33.0
Peaxi162Scf00132g00422 Petunia axillaris HOM05D001115 ORTHO05D001023 7.9e-15 85.1 205 31.2
AL3G53850 Arabidopsis lyrata HOM05D001115 ORTHO05D001023 1.4e-14 84.3 183 30.6
Oeu017970.1 Olea europaea HOM05D001115 ORTHO05D001023 1.8e-14 84.0 175 32.0
TWI36G0781 Tripterygium wilfordii HOM05D001115 ORTHO05D001023 1.8e-14 84.0 169 32.5
Actinidia11044 Actinidia chinensis HOM05D001115 ORTHO05D001023 2.3e-14 83.6 179 31.3
CSS0040668 Camellia sinensis var. sinensis HOM05D001115 ORTHO05D001023 2.3e-14 83.6 178 32.0
Carub.0003s3526 Capsella rubella HOM05D001115 ORTHO05D001023 2.3e-14 83.6 183 30.6
Dinv12923 Davidia involucrata HOM05D001115 ORTHO05D001023 5.1e-14 82.4 174 31.6
AT2G20740 Arabidopsis thaliana HOM05D001115 ORTHO05D001023 6.7e-14 82.0 183 30.1
Prupe.3G155500 Prunus persica HOM05D001115 ORTHO05D001023 6.7e-14 82.0 194 32.5
Migut.H01075 Erythranthe guttata HOM05D001115 ORTHO05D001023 8.8e-14 81.6 184 31.5
Hma1.2p1_1201F.1_g266710 Hydrangea macrophylla HOM05D001115 ORTHO05D001023 8.8e-14 81.6 181 30.4
Solyc07g054160.3 Solanum lycopersicum HOM05D001115 ORTHO05D001023 8.8e-14 81.6 186 31.2
Sopen07g028090 Solanum pennellii HOM05D001115 ORTHO05D001023 1.1e-13 81.3 186 31.2
FAN27G3018 Fragaria x ananassa HOM05D001115 ORTHO05D011468 1.5e-13 80.9 42 90.5
MD17G1242500 Malus domestica HOM05D001115 ORTHO05D001023 1.5e-13 80.9 172 33.1
Lsat_1_v5_gn_8_132900 Lactuca sativa HOM05D001115 ORTHO05D001023 2.0e-13 80.5 186 31.7
Sp3g33990 Schrenkiella parvula HOM05D001115 ORTHO05D001023 2.0e-13 80.5 193 30.6
Atru.chr6.3006 Acer truncatum HOM05D001115 ORTHO05D001023 2.6e-13 80.1 168 31.5
CAN.G248.20 Capsicum annuum HOM05D001115 ORTHO05D001023 2.6e-13 80.1 213 30.0
Ca_25914_v3 Cicer arietinum L. HOM05D001115 ORTHO05D001023 3.3e-13 79.7 222 31.1
Lalb_Chr19g0135301 Lupinus albus HOM05D001115 ORTHO05D001023 3.3e-13 79.7 216 29.6
TPR.G21758 Trifolium pratense HOM05D001115 ORTHO05D001023 3.3e-13 79.7 212 30.7
CAN.G1164.11 Capsicum annuum HOM05D001115 ORTHO05D001023 4.4e-13 79.3 169 32.0
CARHR111410 Cardamine hirsuta HOM05D001115 ORTHO05D001023 4.4e-13 79.3 183 30.6
PSO675G8670 Papaver somniferum HOM05D001115 ORTHO05D001023 4.4e-13 79.3 193 31.1
Thecc.02G177800 Theobroma cacao HOM05D001115 ORTHO05D001023 5.7e-13 79.0 205 29.8
Zm00001eb065970 Zea mays HOM05D001115 ORTHO05D001023 5.7e-13 79.0 212 28.8
Duzib248G1488 Durio zibethinus HOM05D001115 ORTHO05D001023 7.4e-13 78.6 172 32.6
PGSC0003DMG400018311 Solanum tuberosum HOM05D001115 ORTHO05D001023 7.4e-13 78.6 170 32.4
Eucgr.A01807 Eucalyptus grandis HOM05D001115 ORTHO05D001023 9.7e-13 78.2 169 30.2
MSTRG.12313 Avicennia marina HOM05D001115 ORTHO05D001023 1.3e-12 77.8 172 30.2
CiPaw.04G125100 Carya illinoinensis HOM05D001115 ORTHO05D001023 1.3e-12 77.8 190 29.5
Glyma.12G111700 Glycine max HOM05D001115 ORTHO05D001023 1.3e-12 77.8 173 31.2
Thhalv10002095m.g Eutrema salsugineum HOM05D001115 ORTHO05D001023 1.7e-12 77.4 193 29.5
PGSC0003DMG400022440 Solanum tuberosum HOM05D001115 ORTHO05D001023 1.7e-12 77.4 168 32.1
Duzib052G0128 Durio zibethinus HOM05D001115 ORTHO05D001023 2.8e-12 76.6 185 30.8
RcHm_v2.0_Chr2g0126211 Rosa chinensis HOM05D001115 ORTHO05D001023 2.8e-12 76.6 194 30.4
Sopen02g023300 Solanum pennellii HOM05D001115 ORTHO05D001023 2.8e-12 76.6 187 30.5
TAR624G0150 Trochodendron aralioides HOM05D001115 ORTHO05D001023 2.8e-12 76.6 169 33.1
C07p00170 Brassica napus HOM05D001115 ORTHO05D001023 3.7e-12 76.3 174 33.9
BolC7t40468H Brassica oleracea HOM05D001115 ORTHO05D001023 3.7e-12 76.3 174 33.9
TAR626G1725 Trochodendron aralioides HOM05D001115 ORTHO05D001023 3.7e-12 76.3 169 33.1
BcaC06g36765 Brassica carinata HOM05D001115 ORTHO05D001023 4.8e-12 75.9 174 33.9
MBI17_g43193_MAGBIO Magnolia biondii HOM05D001115 ORTHO05D001023 4.8e-12 75.9 189 29.6
THA.LOC104814499 Tarenaya hassleriana HOM05D001115 ORTHO05D001023 6.3e-12 75.5 169 30.2
Glyma.06G293700 Glycine max HOM05D001115 ORTHO05D001023 8.2e-12 75.1 173 30.6
Cpa.g.sc27.59 Carica papaya HOM05D001115 ORTHO05D001023 1.1e-11 74.7 197 27.4
CiPaw.03G175400 Carya illinoinensis HOM05D001115 ORTHO05D001023 1.1e-11 74.7 178 30.9
COL.COLO4_07553 Corchorus olitorius HOM05D001115 ORTHO05D001023 1.4e-11 74.3 178 30.9
Lj3g0023189 Lotus japonicus HOM05D001115 ORTHO05D001023 1.4e-11 74.3 173 31.8
Manes.13G147500 Manihot esculenta HOM05D001115 ORTHO05D001023 1.8e-11 73.9 171 32.7
Phvul.011G117300 Phaseolus vulgaris HOM05D001115 ORTHO05D001023 1.8e-11 73.9 173 30.1
Rhsim04G0067900 Rhododendron simsii HOM05D001115 ORTHO05D001023 1.8e-11 73.9 147 34.0
RhsimUnG0037000 Rhododendron simsii HOM05D001115 ORTHO05D001023 1.8e-11 73.9 147 34.0
VMungo1127G0219 Vigna mungo HOM05D001115 ORTHO05D001023 1.8e-11 73.9 195 28.7
BcaB03g16867 Brassica carinata HOM05D001115 ORTHO05D001023 2.4e-11 73.6 174 33.3
A07p00030 Brassica napus HOM05D001115 ORTHO05D001023 4.1e-11 72.8 179 32.4
HPP92_021013 Vanilla planifolia HOM05D001115 ORTHO05D001023 4.1e-11 72.8 197 28.4
BraA07t27795Z Brassica rapa HOM05D001115 ORTHO05D001023 5.3e-11 72.4 179 32.4
Potri.013G134200 Populus trichocarpa HOM05D001115 ORTHO05D001023 5.3e-11 72.4 214 29.0
Dinv07543 Davidia involucrata HOM05D001115 ORTHO05D001023 6.9e-11 72.0 189 28.0
Solyc02g078450.3 Solanum lycopersicum HOM05D001115 ORTHO05D001023 9.1e-11 71.6 168 32.1
Cpa.g.sc34.143 Carica papaya HOM05D001115 ORTHO05D001023 2.6e-10 70.1 164 29.3
Oeu058381.1 Olea europaea HOM05D001115 ORTHO05D001023 2.6e-10 70.1 171 30.4
SGA_v2.0_scaffold109G31116 Striga asiatica HOM05D001115 ORTHO05D001023 2.6e-10 70.1 165 30.3
FvH4_6g26130 Fragaria vesca HOM05D001115 ORTHO05D001023 3.4e-10 69.7 198 29.8
HanXRQChr17g0553551 Helianthus annuus HOM05D001115 ORTHO05D001023 4.5e-10 69.3 153 30.1
Nn1g06594 Nelumbo nucifera HOM05D001115 ORTHO05D001023 7.7e-10 68.6 213 26.3
PGR004G1130 Punica granatum HOM05D001115 ORTHO05D001023 7.7e-10 68.6 188 29.8
GSVIVG01030374001 Vitis vinifera HOM05D001115 ORTHO05D001023 7.7e-10 68.6 163 27.0
ClCG02G017570 Citrullus lanatus HOM05D001115 ORTHO05D001023 1.0e-09 68.2 170 30.0
Potri.019G101800 Populus trichocarpa HOM05D001115 ORTHO05D001023 1.3e-09 67.8 176 29.0
Lj2A287T55 Lonicera japonica HOM05D001115 ORTHO05D001023 1.7e-09 67.4 164 31.1
arahy.Tifrunner.gnm1.ann1.E3DXNV Arachis hypogaea HOM05D001115 ORTHO05D001023 8.5e-09 65.1 173 27.7
CSS0027947 Camellia sinensis var. sinensis HOM05D001115 ORTHO05D001023 8.5e-09 65.1 199 28.1
Aqoxy1G02522 Aquilegia oxysepala HOM05D001115 ORTHO05D001023 1.1e-08 64.7 178 27.0
MELO3C013608.2 Cucumis melo HOM05D001115 ORTHO05D001023 1.1e-08 64.7 170 27.6
Rhsim02G0127800 Rhododendron simsii HOM05D001115 ORTHO05D001023 1.1e-08 64.7 195 27.2
HPP92_027299 Vanilla planifolia HOM05D001115 ORTHO05D001023 1.1e-08 64.7 156 28.8
Atru.chr10.1912 Acer truncatum HOM05D001115 ORTHO05D001023 1.4e-08 64.3 164 29.9
PGR042G0194 Punica granatum HOM05D001115 ORTHO05D001023 1.4e-08 64.3 171 27.5
SEGI_39764 Sequoiadendron giganteum HOM05D001115 ORTHO05D001023 2.5e-08 63.5 152 32.9
Sabra19G0112900 Salix brachista HOM05D001115 ORTHO05D001023 3.2e-08 63.2 250 26.4
TWI38G2403 Tripterygium wilfordii HOM05D001115 ORTHO05D001023 3.2e-08 63.2 195 28.7
Sabra06G0188800 Salix brachista HOM05D001115 ORTHO05D011468 4.2e-08 62.8 114 41.2
Cc02_g13180 Coffea canephora HOM05D001115 ORTHO05D001023 7.2e-08 62.0 200 25.5
RcHm_v2.0_Chr5g0008101 Rosa chinensis HOM05D001115 ORTHO05D001023 7.2e-08 62.0 212 25.9
Aa31LG8G17760 Aethionema arabicum HOM05D001115 ORTHO05D001023 9.4e-08 61.6 216 26.4
Ciclev10016622m.g Citrus clementina HOM05D001115 ORTHO05D001023 9.4e-08 61.6 178 28.7
ECA246G2980 Erigeron canadensis HOM05D001115 ORTHO05D001023 9.4e-08 61.6 161 29.8
QL08p038410 Quercus lobata HOM05D001115 ORTHO05D001023 9.4e-08 61.6 169 27.2
FvH4_3g04940 Fragaria vesca HOM05D001115 ORTHO05D001023 1.2e-07 61.2 186 26.3
QL05p039812 Quercus lobata HOM05D001115 ORTHO05D001023 1.2e-07 61.2 189 28.0
Actinidia07579 Actinidia chinensis HOM05D001115 ORTHO05D001023 1.6e-07 60.8 196 26.0
AUR62037360 Chenopodium quinoa HOM05D001115 ORTHO05D001023 1.6e-07 60.8 161 28.0
MD05G1314500 Malus domestica HOM05D001115 ORTHO05D001023 2.1e-07 60.5 165 32.7
Nitab4.5_0002158g0030 Nicotiana tabacum HOM05D001115 ORTHO05D001023 2.1e-07 60.5 136 30.9
Lalb_Chr21g0314211 Lupinus albus HOM05D001115 ORTHO05D001023 3.6e-07 59.7 199 29.1
Nn1g04044 Nelumbo nucifera HOM05D001115 ORTHO05D001023 3.6e-07 59.7 138 33.3
FAN11G0571 Fragaria x ananassa HOM05D001115 ORTHO05D001023 4.7e-07 59.3 186 25.8
FAN16G2292 Fragaria x ananassa HOM05D001115 ORTHO05D001023 4.7e-07 59.3 186 25.8
FAN21G2614 Fragaria x ananassa HOM05D001115 ORTHO05D001023 4.7e-07 59.3 186 25.8
FAN25G2831 Fragaria x ananassa HOM05D001115 ORTHO05D001023 4.7e-07 59.3 186 25.8
CSS0001393 Camellia sinensis var. sinensis HOM05D001115 ORTHO05D001023 6.1e-07 58.9 168 29.2
Duzib235G0287 Durio zibethinus HOM05D001115 ORTHO05D001023 6.1e-07 58.9 188 27.7
GSVIVG01002019001 Vitis vinifera HOM05D001115 ORTHO05D001023 6.1e-07 58.9 190 27.4
DCAR_004081 Daucus carota HOM05D001115 ORTHO05D001023 8.0e-07 58.5 157 28.0
arahy.Tifrunner.gnm1.ann1.4RWK86 Arachis hypogaea HOM05D001115 ORTHO05D001023 1.0e-06 58.2 193 27.5
arahy.Tifrunner.gnm1.ann1.UVUE9D Arachis hypogaea HOM05D001115 ORTHO05D001023 1.4e-06 57.8 193 27.5
Pp3c27_2590 Physcomitrium patens HOM05D001115 ORTHO05D001023 1.4e-06 57.8 199 27.1
arahy.Tifrunner.gnm1.ann1.ALBM4S Arachis hypogaea HOM05D001115 ORTHO05D001023 1.8e-06 57.4 190 28.9
Potri.004G041500 Populus trichocarpa HOM05D001115 ORTHO05D001023 1.8e-06 57.4 156 28.8
VMungo0720G0795 Vigna mungo HOM05D001115 ORTHO05D001023 2.3e-06 57.0 178 27.5
Lj5g0023490 Lotus japonicus HOM05D001115 ORTHO05D001023 3.9e-06 56.2 192 27.6
Manes.16G026100 Manihot esculenta HOM05D001115 ORTHO05D001023 3.9e-06 56.2 167 27.5
CiPaw.09G058100 Carya illinoinensis HOM05D001115 ORTHO05D001023 6.7e-06 55.5 173 26.6
CiPaw.10G047300 Carya illinoinensis HOM05D001115 ORTHO05D001023 6.7e-06 55.5 173 27.7
Prupe.4G044700 Prunus persica HOM05D001115 ORTHO05D001023 6.7e-06 55.5 181 26.5
SMO134G0242 Selaginella moellendorffii HOM05D001115 ORTHO05D001023 6.7e-06 55.5 185 26.5
Gohir.A10G024600 Gossypium hirsutum HOM05D001115 ORTHO05D001023 8.8e-06 55.1 186 24.7
TAR365G0159 Trochodendron aralioides HOM05D001115 ORTHO05D001023 8.8e-06 55.1 244 24.2


User provided reference genes

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