Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g36060 Fragaria vesca HOM05D001880 ORTHO05D005098 9.1e-103 377.1 216 100.0
RcHm_v2.0_Chr6g0305791 Rosa chinensis HOM05D001880 ORTHO05D005098 9.1e-103 377.1 216 100.0
Glyma.04G080400 Glycine max HOM05D001880 ORTHO05D005098 9.7e-97 357.1 216 84.3
MD08G1117900 Malus domestica HOM05D001880 ORTHO05D005098 9.7e-97 357.1 216 84.7
CANSAT25G1770 Cannabis sativa HOM05D001880 ORTHO05D005098 1.3e-96 356.7 216 84.7
CiPaw.08G023800 Carya illinoinensis HOM05D001880 ORTHO05D005098 2.2e-96 355.9 216 83.8
Duzib187G1109 Durio zibethinus HOM05D001880 ORTHO05D005098 1.4e-95 353.2 216 84.3
Gohir.D08G272200 Gossypium hirsutum HOM05D001880 ORTHO05D005098 1.4e-95 353.2 216 82.9
Gorai.004G290600 Gossypium raimondii HOM05D001880 ORTHO05D005098 1.4e-95 353.2 216 82.9
MD15G1097400 Malus domestica HOM05D001880 ORTHO05D005098 1.4e-95 353.2 216 83.8
vmacro07643 Vaccinium macrocarpon HOM05D001880 ORTHO05D005098 1.4e-95 353.2 216 83.3
Prupe.1G452200 Prunus persica HOM05D001880 ORTHO05D005098 2.4e-95 352.4 227 81.5
Migut.A00247 Erythranthe guttata HOM05D001880 ORTHO05D005098 4.1e-95 351.7 216 82.9
Glyma.06G082100 Glycine max HOM05D001880 ORTHO05D005098 4.1e-95 351.7 216 83.3
VMungo1309G0461 Vigna mungo HOM05D001880 ORTHO05D005098 4.1e-95 351.7 215 82.8
COL.COLO4_18693 Corchorus olitorius HOM05D001880 ORTHO05D005098 5.3e-95 351.3 216 84.7
Lalb_Chr08g0243251 Lupinus albus HOM05D001880 ORTHO05D005098 5.3e-95 351.3 216 83.3
Potri.018G037800 Populus trichocarpa HOM05D001880 ORTHO05D005098 5.3e-95 351.3 216 81.5
THA.LOC104815053 Tarenaya hassleriana HOM05D001880 ORTHO05D005098 5.3e-95 351.3 216 81.9
Manes.16G065900 Manihot esculenta HOM05D001880 ORTHO05D005098 9.1e-95 350.5 216 81.9
TWI32G1114 Tripterygium wilfordii HOM05D001880 ORTHO05D005098 1.2e-94 350.1 216 84.3
Phvul.009G106500 Phaseolus vulgaris HOM05D001880 ORTHO05D005098 1.6e-94 349.7 216 82.4
Eucgr.C01583 Eucalyptus grandis HOM05D001880 ORTHO05D005098 2.0e-94 349.4 216 81.0
Potri.006G241900 Populus trichocarpa HOM05D001880 ORTHO05D005098 2.7e-94 349.0 216 82.4
arahy.Tifrunner.gnm1.ann1.0TS4QU Arachis hypogaea HOM05D001880 ORTHO05D005098 3.5e-94 348.6 216 81.5
arahy.Tifrunner.gnm1.ann1.I4CW6I Arachis hypogaea HOM05D001880 ORTHO05D005098 3.5e-94 348.6 216 81.5
CSS0008123 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 3.5e-94 348.6 216 82.4
CSS0050171 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 3.5e-94 348.6 216 82.4
Cpa.g.sc78.78 Carica papaya HOM05D001880 ORTHO05D005098 3.5e-94 348.6 216 83.8
Gohir.A08G250700 Gossypium hirsutum HOM05D001880 ORTHO05D005098 3.5e-94 348.6 216 81.9
ClCG11G014050 Citrullus lanatus HOM05D001880 ORTHO05D005098 4.5e-94 348.2 216 82.4
Lj1g0025868 Lotus japonicus HOM05D001880 ORTHO05D005098 4.5e-94 348.2 220 81.8
Cfa013347 Carpinus fangiana HOM05D001880 ORTHO05D005098 5.9e-94 347.8 215 81.9
Nn3g18068 Nelumbo nucifera HOM05D001880 ORTHO05D005098 5.9e-94 347.8 216 81.5
Psat0s4721g0040 Pisum sativum HOM05D001880 ORTHO05D005098 5.9e-94 347.8 216 81.9
Lalb_Chr23g0269461 Lupinus albus HOM05D001880 ORTHO05D005098 7.7e-94 347.4 216 82.4
Aqoxy7G01618 Aquilegia oxysepala HOM05D001880 ORTHO05D005098 1.7e-93 346.3 216 81.0
Duzib150G0439 Durio zibethinus HOM05D001880 ORTHO05D005098 1.7e-93 346.3 216 81.5
Lalb_Chr11g0064351 Lupinus albus HOM05D001880 ORTHO05D005098 1.7e-93 346.3 216 81.5
PGR044G1166 Punica granatum HOM05D001880 ORTHO05D005098 1.7e-93 346.3 216 83.3
Thecc.09G040200 Theobroma cacao HOM05D001880 ORTHO05D005098 1.7e-93 346.3 216 81.5
Atru.chr7.2156 Acer truncatum HOM05D001880 ORTHO05D005098 2.2e-93 345.9 216 81.0
Ciclev10009455m.g Citrus clementina HOM05D001880 ORTHO05D005098 2.2e-93 345.9 216 81.0
TPR.G1376 Trifolium pratense HOM05D001880 ORTHO05D005098 2.9e-93 345.5 216 85.2
TWI63G1366 Tripterygium wilfordii HOM05D001880 ORTHO05D005098 2.9e-93 345.5 216 81.9
MELO3C003579.2 Cucumis melo HOM05D001880 ORTHO05D005098 3.8e-93 345.1 216 81.9
CsaV3_3G047450 Cucumis sativus L. HOM05D001880 ORTHO05D005098 3.8e-93 345.1 216 81.9
Sed0004320 Sechium edule HOM05D001880 ORTHO05D005098 3.8e-93 345.1 216 81.0
TAR383G0375 Trochodendron aralioides HOM05D001880 ORTHO05D005098 3.8e-93 345.1 216 81.9
ATR0315G044 Amborella trichopoda HOM05D001880 ORTHO05D005098 5.0e-93 344.7 216 81.5
Gohir.A05G048200 Gossypium hirsutum HOM05D001880 ORTHO05D005098 5.0e-93 344.7 216 84.3
Medtr3g110022 Medicago truncatula HOM05D001880 ORTHO05D005098 5.0e-93 344.7 216 81.5
PSO210G6462 Papaver somniferum HOM05D001880 ORTHO05D005098 6.5e-93 344.4 216 80.6
Gohir.D05G049500 Gossypium hirsutum HOM05D001880 ORTHO05D005098 8.5e-93 344.0 216 83.8
Hma1.2p1_0422F.1_g150140 Hydrangea macrophylla HOM05D001880 ORTHO05D005098 8.5e-93 344.0 216 81.0
PSO210G1422 Papaver somniferum HOM05D001880 ORTHO05D005098 1.5e-92 343.2 216 80.1
CiPaw.07G206800 Carya illinoinensis HOM05D001880 ORTHO05D005098 2.5e-92 342.4 215 79.5
Hma1.2p1_0140F.1_g063500 Hydrangea macrophylla HOM05D001880 ORTHO05D005098 2.5e-92 342.4 216 80.6
Sed0015028 Sechium edule HOM05D001880 ORTHO05D005098 3.2e-92 342.0 216 80.6
THA.LOC104799203 Tarenaya hassleriana HOM05D001880 ORTHO05D005098 3.2e-92 342.0 216 79.6
TAR626G0694 Trochodendron aralioides HOM05D001880 ORTHO05D005098 3.2e-92 342.0 216 80.6
Gorai.009G050800 Gossypium raimondii HOM05D001880 ORTHO05D005098 4.2e-92 341.7 216 83.3
Carub.0006s0996 Capsella rubella HOM05D001880 ORTHO05D005098 5.5e-92 341.3 216 77.8
HanXRQChr07g0188141 Helianthus annuus HOM05D001880 ORTHO05D005098 5.5e-92 341.3 216 80.6
Thhalv10014652m.g Eutrema salsugineum HOM05D001880 ORTHO05D005098 9.4e-92 340.5 216 77.8
AL6G22170 Arabidopsis lyrata HOM05D001880 ORTHO05D005098 1.2e-91 340.1 216 77.3
AT5G11500 Arabidopsis thaliana HOM05D001880 ORTHO05D005098 1.2e-91 340.1 216 77.3
CARHR201720 Cardamine hirsuta HOM05D001880 ORTHO05D005098 1.2e-91 340.1 216 77.8
Sp6g32100 Schrenkiella parvula HOM05D001880 ORTHO05D005098 1.2e-91 340.1 216 77.8
BcaB08g37053 Brassica carinata HOM05D001880 ORTHO05D005098 1.6e-91 339.7 216 77.3
DCAR_004495 Daucus carota HOM05D001880 ORTHO05D005098 1.6e-91 339.7 216 80.6
HPP92_023949 Vanilla planifolia HOM05D001880 ORTHO05D005098 1.6e-91 339.7 216 78.2
BcaB01g05480 Brassica carinata HOM05D001880 ORTHO05D005098 2.7e-91 339.0 216 77.3
BcaC03g13368 Brassica carinata HOM05D001880 ORTHO05D005098 2.7e-91 339.0 216 77.3
A03p05050 Brassica napus HOM05D001880 ORTHO05D005098 2.7e-91 339.0 216 77.3
BraA03t09839Z Brassica rapa HOM05D001880 ORTHO05D005098 2.7e-91 339.0 216 77.3
DCAR_000746 Daucus carota HOM05D001880 ORTHO05D005098 2.7e-91 339.0 216 79.6
MSTRG.25891 Avicennia marina HOM05D001880 ORTHO05D005098 3.6e-91 338.6 216 79.6
C03p05780 Brassica napus HOM05D001880 ORTHO05D005098 3.6e-91 338.6 216 76.9
BolC3t13091H Brassica oleracea HOM05D001880 ORTHO05D005098 3.6e-91 338.6 216 76.9
CAN.G21.29 Capsicum annuum HOM05D001880 ORTHO05D005098 3.6e-91 338.6 216 78.7
Cc08_g09010 Coffea canephora HOM05D001880 ORTHO05D005098 4.7e-91 338.2 216 78.2
A10p26250 Brassica napus HOM05D001880 ORTHO05D005098 6.1e-91 337.8 216 76.4
BraA10t44682Z Brassica rapa HOM05D001880 ORTHO05D005098 6.1e-91 337.8 216 76.4
Manes.03G063100 Manihot esculenta HOM05D001880 ORTHO05D005098 6.1e-91 337.8 216 79.2
Peaxi162Scf00523g00111 Petunia axillaris HOM05D001880 ORTHO05D005098 6.1e-91 337.8 216 79.6
BcaC04g19219 Brassica carinata HOM05D001880 ORTHO05D005098 8.0e-91 337.4 216 76.4
C09p65340 Brassica napus HOM05D001880 ORTHO05D005098 8.0e-91 337.4 216 76.4
BolC9t59360H Brassica oleracea HOM05D001880 ORTHO05D005098 8.0e-91 337.4 216 76.4
Gohir.D07G027400 Gossypium hirsutum HOM05D001880 ORTHO05D005098 1.0e-90 337.0 216 80.1
Solyc08g068300.3 Solanum lycopersicum HOM05D001880 ORTHO05D005098 1.0e-90 337.0 216 78.7
Sopen08g022150 Solanum pennellii HOM05D001880 ORTHO05D005098 1.0e-90 337.0 216 78.7
Dinv14228 Davidia involucrata HOM05D001880 ORTHO05D005098 1.4e-90 336.7 216 80.1
PGSC0003DMG400010834 Solanum tuberosum HOM05D001880 ORTHO05D005098 1.4e-90 336.7 216 78.2
C02p05070 Brassica napus HOM05D001880 ORTHO05D005098 2.3e-90 335.9 216 76.4
FAN27G1491 Fragaria x ananassa HOM05D001880 ORTHO05D005098 2.3e-90 335.9 216 92.6
Nitab4.5_0007240g0010 Nicotiana tabacum HOM05D001880 ORTHO05D005098 2.3e-90 335.9 216 78.7
Gohir.A07G023800 Gossypium hirsutum HOM05D001880 ORTHO05D005098 3.0e-90 335.5 216 79.6
Zm00001eb350500 Zea mays HOM05D001880 ORTHO05D005098 3.0e-90 335.5 216 77.3
Aqoxy7G03843 Aquilegia oxysepala HOM05D001880 ORTHO05D005098 4.0e-90 335.1 216 77.8
CDE05G1188 Ceratophyllum demersum HOM05D001880 ORTHO05D005098 4.0e-90 335.1 216 78.2
MSTRG.1651 Avicennia marina HOM05D001880 ORTHO05D005098 5.2e-90 334.7 216 79.2
Nn2g11707 Nelumbo nucifera HOM05D001880 ORTHO05D005098 6.8e-90 334.3 216 78.7
FAN15G2674 Fragaria x ananassa HOM05D001880 ORTHO05D005098 8.8e-90 334.0 216 92.1
Nitab4.5_0000052g0180 Nicotiana tabacum HOM05D001880 ORTHO05D005098 1.2e-89 333.6 214 78.5
unitig_748.g7799 Utricularia gibba HOM05D001880 ORTHO05D005098 1.2e-89 333.6 216 76.9
Gorai.001G028600 Gossypium raimondii HOM05D001880 ORTHO05D005098 1.7e-88 329.7 215 77.7
SGA_v2.0_scaffold163G38091 Striga asiatica HOM05D001880 ORTHO05D005098 8.3e-88 327.4 221 76.9
GSVIVG01035667001 Vitis vinifera HOM05D001880 ORTHO05D005098 5.4e-87 324.7 199 83.9
BcaNung01928 Brassica carinata HOM05D001880 ORTHO05D005098 1.6e-86 323.2 221 74.2
SalBow8G4639 Salvia bowleyana HOM05D001880 ORTHO05D005098 1.6e-86 323.2 217 76.0
Hund19544 Selenicereus undatus HOM05D001880 ORTHO05D005098 3.5e-86 322.0 221 78.3
SMO134G0016 Selaginella moellendorffii HOM05D001880 ORTHO05D005098 5.5e-84 314.7 216 71.3
Rhsim03G0046500 Rhododendron simsii HOM05D001880 ORTHO05D005098 1.2e-83 313.5 216 76.4
SalBow4G0117 Salvia bowleyana HOM05D001880 ORTHO05D005098 2.7e-83 312.4 216 76.4
CBR_g39177 Chara braunii HOM05D001880 ORTHO05D005098 4.0e-82 308.5 216 71.3
Mapoly0042s0036 Marchantia polymorpha HOM05D001880 ORTHO05D005098 1.5e-81 306.6 216 70.4
CBR_g40963 Chara braunii HOM05D001880 ORTHO05D005098 4.4e-81 305.1 216 70.4
BolC2t06461H Brassica oleracea HOM05D001880 ORTHO05D005098 2.8e-80 302.4 218 70.2
Oeu014654.1 Olea europaea HOM05D001880 ORTHO05D005098 6.3e-80 301.2 216 76.9
Aa31LG3G15700 Aethionema arabicum HOM05D001758 ORTHO05D005969 8.3e-80 300.8 216 71.3
Pp3c9_4250 Physcomitrium patens HOM05D001880 ORTHO05D005098 1.8e-79 299.7 216 70.4
Lj8C597T7 Lonicera japonica HOM05D001880 ORTHO05D005098 5.4e-79 298.1 216 71.3
QL12p026578 Quercus lobata HOM05D001880 ORTHO05D005098 2.0e-78 296.2 152 94.1
SGA_v2.0_scaffold169G38642 Striga asiatica HOM05D001880 ORTHO05D005098 7.7e-78 294.3 216 71.3
Pp3c9_9290 Physcomitrium patens HOM05D001880 ORTHO05D005098 1.3e-77 293.5 216 69.0
ECA246G2183 Erigeron canadensis HOM05D001880 ORTHO05D004730 2.3e-77 292.7 181 80.1
Os01g0750500 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D005098 2.9e-77 292.4 216 66.7
PSO832G1756 Papaver somniferum HOM05D001880 ORTHO05D005098 2.9e-77 292.4 217 79.7
Dinv30256 Davidia involucrata HOM05D001880 ORTHO05D005098 5.0e-77 291.6 152 92.8
Sc09g0009110 Simmondsia chinensis HOM05D001880 ORTHO05D005098 2.5e-76 289.3 276 62.0
Ca_15617_v3 Cicer arietinum L. HOM05D001880 ORTHO05D005098 3.3e-76 288.9 152 92.1
AUR62009327 Chenopodium quinoa HOM05D001880 ORTHO05D005098 6.1e-75 284.6 216 72.7
Oeu016233.2 Olea europaea HOM05D001880 ORTHO05D005098 2.6e-73 279.3 216 74.1
Lsat_1_v5_gn_5_34021 Lactuca sativa HOM05D001880 ORTHO05D005098 9.8e-73 277.3 215 67.9
EL10Ac2g04067 Beta vulgaris HOM05D001880 ORTHO05D005098 6.4e-72 274.6 216 71.8
Zm00001eb153360 Zea mays HOM05D001880 ORTHO05D005098 5.4e-71 271.6 217 68.2
Gorai.011G152300 Gossypium raimondii HOM05D001880 ORTHO05D005098 4.6e-70 268.5 216 69.0
Ah.10g035220 Amaranthus hybridus HOM05D001880 ORTHO05D005098 6.2e-67 258.1 217 73.7
AagrBONN_evm.TU.Sc2ySwM_228.2603 Anthoceros agrestis HOM05D001880 ORTHO05D005098 4.4e-65 251.9 144 80.6
AUR62023014 Chenopodium quinoa HOM05D000682 ORTHO05D000510 6.4e-64 248.1 203 67.0
Sabra18G0038400 Salix brachista HOM05D001880 ORTHO05D005098 1.4e-63 246.9 152 80.3
Haze_21860 Corylus avellana HOM05D001880 ORTHO05D005098 4.6e-62 241.9 353 44.5
Lj8C602T7 Lonicera japonica HOM05D001880 ORTHO05D005098 4.6e-62 241.9 216 61.1
Rhsim03G0044500 Rhododendron simsii HOM05D001880 ORTHO05D005098 3.3e-60 235.7 180 72.2
PRCOL_00004463 Prasinoderma coloniale HOM05D001880 ORTHO05D005098 4.1e-55 218.8 233 55.4
MCO11G833 Micromonas commoda HOM05D001880 ORTHO05D005098 5.4e-55 218.4 219 53.4
Cc00_g02820 Coffea canephora HOM05D001880 ORTHO05D005098 8.4e-48 194.5 108 82.4
Cc03_g15000 Coffea canephora HOM05D001880 ORTHO05D005098 8.4e-48 194.5 108 82.4
Cre06.g275300 Chlamydomonas reinhardtii HOM05D001880 ORTHO05D005098 2.1e-46 189.9 219 47.9
Cfa026630 Carpinus fangiana HOM05D004477 ORTHO05D005615 1.1e-44 184.1 149 59.7
CSS0023199 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 1.2e-43 180.6 269 46.1
HPP92_023928 Vanilla planifolia HOM05D001880 ORTHO05D005098 3.8e-40 169.1 138 68.1
Lj7A706G42 Lonicera japonica HOM05D001880 ORTHO05D001339 6.4e-40 168.3 122 69.7
HPP92_023929 Vanilla planifolia HOM05D001880 ORTHO05D005098 1.3e-37 160.6 84 86.9
MBI04_g19163_MAGBIO Magnolia biondii HOM05D001880 ORTHO05D005098 6.6e-37 158.3 136 64.7
Pp3c9_8200 Physcomitrium patens HOM05D001880 ORTHO05D005098 1.1e-36 157.5 106 73.6
Sabra06G0189300 Salix brachista HOM05D001880 ORTHO05D005098 7.3e-36 154.8 81 88.9
Os05g0221400 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D005098 4.5e-33 145.6 81 84.0
Lj7A706T45 Lonicera japonica HOM05D001880 ORTHO05D005098 1.5e-28 130.6 114 63.2
Zm00001eb036010 Zea mays HOM05D001880 ORTHO05D005098 4.0e-26 122.5 106 63.2
Zm00001eb052320 Zea mays HOM05D001880 ORTHO05D005098 4.0e-26 122.5 106 63.2
Zm00001eb071380 Zea mays HOM05D001880 ORTHO05D005098 4.0e-26 122.5 106 63.2
Zm00001eb291550 Zea mays HOM05D001880 ORTHO05D005098 4.0e-26 122.5 106 63.2
Zm00001eb391830 Zea mays HOM05D001880 ORTHO05D005098 4.0e-26 122.5 106 63.2
Cc00_g34580 Coffea canephora HOM05D001880 ORTHO05D005098 9.0e-26 121.3 70 72.9
CSS0036439 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 3.5e-14 82.8 50 84.0
Gorai.011G178000 Gossypium raimondii HOM05D001880 ORTHO05D005098 9.6e-12 74.7 74 56.8
Gorai.011G118500 Gossypium raimondii HOM05D001880 ORTHO05D013650 1.5e-09 67.4 39 74.4
SalBow5G0200 Salvia bowleyana HOM05D001880 ORTHO05D355852 2.0e-09 67.0 48 68.8
SalBow8G1849 Salvia bowleyana HOM05D001880 ORTHO05D363534 2.0e-09 67.0 48 68.8
SalBow8G2043 Salvia bowleyana HOM05D001880 ORTHO05D356500 2.0e-09 67.0 48 68.8
Gorai.002G175500 Gossypium raimondii HOM05D001035 ORTHO05D013650 5.9e-09 65.5 39 71.8
Gorai.012G085200 Gossypium raimondii HOM05D001880 ORTHO05D005098 5.9e-09 65.5 43 76.7
SalBow6G5594 Salvia bowleyana HOM05D001880 ORTHO05D357349 7.6e-09 65.1 48 66.7


User provided reference genes

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