Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0305551 Rosa chinensis HOM05D003500 ORTHO05D003919 4.0e-126 454.9 253 100.0
FAN20G2191 Fragaria x ananassa HOM05D003500 ORTHO05D003919 6.9e-94 347.8 261 78.5
FvH4_2g36330 Fragaria vesca HOM05D003500 ORTHO05D003919 5.1e-89 331.6 262 75.2
FAN27G2449 Fragaria x ananassa HOM05D003500 ORTHO05D003919 8.2e-87 324.3 262 74.0
Prupe.1G454700 Prunus persica HOM05D003500 ORTHO05D003919 8.6e-52 208.0 269 56.1
MD15G1099900 Malus domestica HOM05D003500 ORTHO05D003919 5.9e-45 185.3 294 51.0
QL12p026085 Quercus lobata HOM05D003500 ORTHO05D003919 6.1e-42 175.3 288 45.8
CiPaw.07G208500 Carya illinoinensis HOM05D003500 ORTHO05D003919 9.2e-38 161.4 294 43.5
Haze_21819 Corylus avellana HOM05D003500 ORTHO05D003919 3.5e-37 159.5 304 43.4
Actinidia14650 Actinidia chinensis HOM05D003500 ORTHO05D003919 6.0e-37 158.7 289 43.6
Actinidia15719 Actinidia chinensis HOM05D003500 ORTHO05D003919 1.3e-36 157.5 287 44.6
Cfa013328 Carpinus fangiana HOM05D003500 ORTHO05D003919 2.3e-36 156.8 294 43.5
TAR624G1157 Trochodendron aralioides HOM05D003500 ORTHO05D003919 3.9e-36 156.0 295 39.3
MELO3C011162.2 Cucumis melo HOM05D003500 ORTHO05D003919 8.6e-36 154.8 288 42.4
Gohir.A07G024400 Gossypium hirsutum HOM05D003500 ORTHO05D003919 2.5e-35 153.3 285 42.8
Gorai.001G029300 Gossypium raimondii HOM05D003500 ORTHO05D003919 4.7e-34 149.1 263 42.2
Sabra18G0036300 Salix brachista HOM05D003500 ORTHO05D003919 4.7e-34 149.1 273 41.4
Gohir.D07G028000 Gossypium hirsutum HOM05D003500 ORTHO05D003919 6.2e-34 148.7 286 39.9
Potri.018G035800 Populus trichocarpa HOM05D003500 ORTHO05D003919 1.8e-33 147.1 272 40.8
CsaV3_2G031120 Cucumis sativus L. HOM05D003500 ORTHO05D003919 2.3e-33 146.7 294 40.8
Thecc.09G037900 Theobroma cacao HOM05D003500 ORTHO05D003919 6.8e-33 145.2 288 39.2
Hma1.2p1_0140F.1_g063720 Hydrangea macrophylla HOM05D003500 ORTHO05D003919 8.9e-33 144.8 296 40.9
arahy.Tifrunner.gnm1.ann1.V41S3G Arachis hypogaea HOM05D003500 ORTHO05D003919 3.4e-32 142.9 272 43.8
CSS0048332 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 4.4e-32 142.5 290 40.0
Rhsim07G0154900 Rhododendron simsii HOM05D003500 ORTHO05D003919 4.4e-32 142.5 297 39.1
ClCG08G012430 Citrullus lanatus HOM05D003500 ORTHO05D003919 9.8e-32 141.4 292 42.1
Dinv14210 Davidia involucrata HOM05D003500 ORTHO05D003919 1.7e-31 140.6 293 41.0
Eucgr.C02880 Eucalyptus grandis HOM05D003500 ORTHO05D003919 2.9e-31 139.8 285 41.4
GSVIVG01035753001 Vitis vinifera HOM05D003500 ORTHO05D003919 4.9e-31 139.0 297 40.7
Lj8A606T22 Lonicera japonica HOM05D003500 ORTHO05D003919 6.4e-31 138.7 281 39.1
TWI32G0121 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 6.4e-31 138.7 284 38.4
Atru.chr7.2303 Acer truncatum HOM05D003500 ORTHO05D003919 2.4e-30 136.7 326 39.0
CANSAT35G1218 Cannabis sativa HOM05D003500 ORTHO05D003919 2.7e-29 133.3 297 38.0
Sc09g0008940 Simmondsia chinensis HOM05D003500 ORTHO05D003919 2.7e-29 133.3 279 36.2
arahy.Tifrunner.gnm1.ann1.HR3BJH Arachis hypogaea HOM05D003500 ORTHO05D003919 7.8e-29 131.7 270 42.2
Ciclev10009124m.g Citrus clementina HOM05D003500 ORTHO05D003919 1.0e-28 131.3 287 39.4
Lalb_Chr03g0029341 Lupinus albus HOM05D003500 ORTHO05D003919 1.3e-28 131.0 271 41.7
Manes.16G069800 Manihot esculenta HOM05D003500 ORTHO05D003919 3.0e-28 129.8 283 38.5
SGA_v2.0_scaffold169G38640 Striga asiatica HOM05D003500 ORTHO05D003919 3.0e-28 129.8 270 40.4
Duzib187G1538 Durio zibethinus HOM05D003500 ORTHO05D003919 1.5e-27 127.5 283 37.8
TPR.G21779 Trifolium pratense HOM05D003500 ORTHO05D003919 1.5e-27 127.5 267 39.3
Glyma.12G113900 Glycine max HOM05D003500 ORTHO05D003919 2.5e-27 126.7 251 41.8
Duzib168G0612 Durio zibethinus HOM05D003500 ORTHO05D003919 5.6e-27 125.6 295 38.0
TPR.G31013 Trifolium pratense HOM05D003500 ORTHO05D003919 9.5e-27 124.8 267 40.4
VMungo1127G1234 Vigna mungo HOM05D003500 ORTHO05D003919 2.1e-26 123.6 261 39.5
PGR044G1892 Punica granatum HOM05D003500 ORTHO05D003919 1.1e-25 121.3 281 37.7
AUR62024822 Chenopodium quinoa HOM05D003500 ORTHO05D003919 2.3e-25 120.2 277 39.4
Migut.E01507 Erythranthe guttata HOM05D003500 ORTHO05D003919 4.0e-25 119.4 254 37.0
Lj3g0003659 Lotus japonicus HOM05D003500 ORTHO05D003919 5.2e-25 119.0 276 37.3
EL10Ac2g02525 Beta vulgaris HOM05D003500 ORTHO05D003919 8.9e-25 118.2 265 38.9
Ca_26668_v3 Cicer arietinum L. HOM05D003500 ORTHO05D003919 1.2e-24 117.9 258 39.1
Nitab4.5_0002393g0050 Nicotiana tabacum HOM05D003500 ORTHO05D003919 1.5e-24 117.5 287 36.2
Psat7g063400 Pisum sativum HOM05D003500 ORTHO05D003919 1.5e-24 117.5 273 38.8
vmacro05351 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 2.6e-24 116.7 274 39.4
Medtr6g007370 Medicago truncatula HOM05D003500 ORTHO05D003919 3.4e-24 116.3 257 41.6
Medtr7g446310 Medicago truncatula HOM05D003500 ORTHO05D003919 3.4e-24 116.3 257 41.6
Phvul.011G117800 Phaseolus vulgaris HOM05D003500 ORTHO05D003919 3.4e-24 116.3 255 37.3
AUR62032393 Chenopodium quinoa HOM05D003500 ORTHO05D003919 5.8e-24 115.5 275 37.5
Cfa002069 Carpinus fangiana HOM05D003500 ORTHO05D003919 7.5e-24 115.2 271 36.5
Sopen08g021950 Solanum pennellii HOM05D003500 ORTHO05D003919 1.3e-23 114.4 290 35.2
Aa31LG2G16940 Aethionema arabicum HOM05D003500 ORTHO05D003919 1.7e-23 114.0 281 35.6
TAR636G0685 Trochodendron aralioides HOM05D003500 ORTHO05D003919 1.7e-23 114.0 271 37.3
MSTRG.14007 Avicennia marina HOM05D003500 ORTHO05D003919 3.7e-23 112.8 293 39.6
DCAR_003060 Daucus carota HOM05D003500 ORTHO05D003919 6.4e-23 112.1 271 38.7
Solyc08g068060.3 Solanum lycopersicum HOM05D003500 ORTHO05D003919 8.3e-23 111.7 288 35.4
Prupe.3G070800 Prunus persica HOM05D003500 ORTHO05D003919 1.1e-22 111.3 280 35.7
THA.LOC104818564 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 1.9e-22 110.5 291 35.1
PGR102G2146 Punica granatum HOM05D003500 ORTHO05D003919 4.1e-22 109.4 262 37.8
PGSC0003DMG400014491 Solanum tuberosum HOM05D003500 ORTHO05D003919 1.6e-21 107.5 291 33.7
CAN.G886.10 Capsicum annuum HOM05D003500 ORTHO05D003919 2.1e-21 107.1 292 33.9
Haze_16428 Corylus avellana HOM05D003500 ORTHO05D003919 4.6e-21 105.9 292 33.9
PSO782G3147 Papaver somniferum HOM05D003500 ORTHO05D003919 6.0e-21 105.5 341 31.7
Dinv30238 Davidia involucrata HOM05D003500 ORTHO05D003919 7.8e-21 105.1 242 39.3
HanXRQChr01g0029371 Helianthus annuus HOM05D003500 ORTHO05D003919 1.0e-20 104.8 266 33.5
BolC1t00621H Brassica oleracea HOM05D003500 ORTHO05D003919 1.3e-20 104.4 274 33.2
RcHm_v2.0_Chr2g0137891 Rosa chinensis HOM05D003500 ORTHO05D003919 3.0e-20 103.2 259 34.4
vmacro18911 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 3.0e-20 103.2 299 32.4
BcaB03g12755 Brassica carinata HOM05D003500 ORTHO05D003919 6.6e-20 102.1 277 32.9
AT4G32680 Arabidopsis thaliana HOM05D003500 ORTHO05D003919 8.6e-20 101.7 284 32.7
CARHR240660 Cardamine hirsuta HOM05D003500 ORTHO05D003919 1.1e-19 101.3 272 33.5
Potri.003G055200 Populus trichocarpa HOM05D003500 ORTHO05D003919 1.1e-19 101.3 280 33.9
BraA08t33760Z Brassica rapa HOM05D003500 ORTHO05D003919 1.5e-19 100.9 278 32.7
Thhalv10025931m.g Eutrema salsugineum HOM05D003500 ORTHO05D003919 1.5e-19 100.9 282 31.2
A01p05660 Brassica napus HOM05D003500 ORTHO05D003919 2.5e-19 100.1 280 34.3
FvH4_6g31220 Fragaria vesca HOM05D003500 ORTHO05D003919 3.3e-19 99.8 256 34.0
PSO063G0209 Papaver somniferum HOM05D003500 ORTHO05D003919 4.3e-19 99.4 341 31.7
Sp7g30440 Schrenkiella parvula HOM05D003500 ORTHO05D003919 4.3e-19 99.4 285 31.9
BcaC01g01007 Brassica carinata HOM05D003500 ORTHO05D003919 5.6e-19 99.0 264 33.3
Ah.10g025530 Amaranthus hybridus HOM05D003500 ORTHO05D003919 7.3e-19 98.6 270 35.2
Aqoxy7G01735 Aquilegia oxysepala HOM05D003500 ORTHO05D003919 1.2e-18 97.8 314 32.8
C03p87180 Brassica napus HOM05D003500 ORTHO05D003919 1.2e-18 97.8 278 32.7
BolC3t21020H Brassica oleracea HOM05D003500 ORTHO05D003919 1.2e-18 97.8 278 32.7
FAN14G5419 Fragaria x ananassa HOM05D003500 ORTHO05D003919 1.2e-18 97.8 254 33.9
Carub.0007s0785 Capsella rubella HOM05D003500 ORTHO05D003919 1.6e-18 97.4 279 33.7
TWI18G0570 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 6.2e-18 95.5 267 33.3
Lsat_1_v5_gn_1_49081 Lactuca sativa HOM05D003500 ORTHO05D003919 1.1e-17 94.7 269 35.3
AL7G19060 Arabidopsis lyrata HOM05D003500 ORTHO05D003919 1.4e-17 94.4 283 31.8
BraA01t00536Z Brassica rapa HOM05D003500 ORTHO05D003919 1.8e-17 94.0 277 32.9
MD17G1194800 Malus domestica HOM05D003500 ORTHO05D003919 3.1e-17 93.2 277 33.2
BcaC09g52062 Brassica carinata HOM05D003500 ORTHO05D003919 1.2e-16 91.3 286 30.8
Oeu014656.1 Olea europaea HOM05D003500 ORTHO05D003919 3.4e-16 89.7 209 34.9
Sed0003187 Sechium edule HOM05D003500 ORTHO05D003919 1.3e-15 87.8 298 30.5
Actinidia32755 Actinidia chinensis HOM05D003500 ORTHO05D003919 1.7e-15 87.4 258 35.7
C06p07810 Brassica napus HOM05D003500 ORTHO05D003919 1.7e-15 87.4 264 31.1
Dinv30507 Davidia involucrata HOM05D003500 ORTHO05D003919 2.9e-15 86.7 273 31.9
Nitab4.5_0000250g0140 Nicotiana tabacum HOM05D003500 ORTHO05D003919 2.9e-15 86.7 288 33.0
Oeu000451.1 Olea europaea HOM05D003500 ORTHO05D003919 2.9e-15 86.7 293 32.4
Cc08_g08590 Coffea canephora HOM05D003500 ORTHO05D003919 3.8e-15 86.3 281 30.2
Potri.006G244600 Populus trichocarpa HOM05D003500 ORTHO05D003919 3.8e-15 86.3 226 35.8
BolC6t35867H Brassica oleracea HOM05D003500 ORTHO05D003919 6.4e-15 85.5 266 30.5
BraA06t23403Z Brassica rapa HOM05D003500 ORTHO05D003919 1.1e-14 84.7 255 30.6
Migut.D01030 Erythranthe guttata HOM05D003500 ORTHO05D003919 1.1e-14 84.7 262 29.8
Sc12g0009290 Simmondsia chinensis HOM05D003500 ORTHO05D003919 1.1e-14 84.7 264 31.8
HPP92_005532 Vanilla planifolia HOM05D003500 ORTHO05D003919 1.4e-14 84.3 273 31.1
A06p01860 Brassica napus HOM05D003500 ORTHO05D003919 1.9e-14 84.0 264 30.3
CiPaw.01G239100 Carya illinoinensis HOM05D003500 ORTHO05D003919 4.1e-14 82.8 187 35.8
Ciclev10027012m.g Citrus clementina HOM05D003500 ORTHO05D003919 5.4e-14 82.4 277 33.9
Sed0000644 Sechium edule HOM05D003500 ORTHO05D003919 7.1e-14 82.0 226 32.3
AT1G52343 Arabidopsis thaliana HOM05D003500 ORTHO05D003919 4.6e-13 79.3 253 32.0
VMungo0331G1412 Vigna mungo HOM05D003500 ORTHO05D003919 4.6e-13 79.3 307 29.3
ECA248G2427 Erigeron canadensis HOM05D002222 ORTHO05D002354 7.8e-13 78.6 289 28.7
Peaxi162Scf00105g00615 Petunia axillaris HOM05D003500 ORTHO05D003919 7.8e-13 78.6 288 32.6
CsaV3_3G025090 Cucumis sativus L. HOM05D003500 ORTHO05D003919 1.0e-12 78.2 302 28.8
Hund25650 Selenicereus undatus HOM05D003500 ORTHO05D003919 1.0e-12 78.2 258 31.4
Sp1g38960 Schrenkiella parvula HOM05D003500 ORTHO05D003919 2.3e-12 77.0 254 30.3
THA.LOC104810618 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 2.3e-12 77.0 268 31.7
QL05p023510 Quercus lobata HOM05D003500 ORTHO05D003919 3.0e-12 76.6 135 37.0
ClCG07G013080 Citrullus lanatus HOM05D003500 ORTHO05D003919 3.9e-12 76.3 303 28.1
Thhalv10012010m.g Eutrema salsugineum HOM05D003500 ORTHO05D003919 3.9e-12 76.3 265 31.3
SalBow2G3431 Salvia bowleyana HOM05D003500 ORTHO05D003919 5.1e-12 75.9 255 29.0
Ca_20390_v3 Cicer arietinum L. HOM05D003500 ORTHO05D003919 6.6e-12 75.5 263 31.6
Migut.I00867 Erythranthe guttata HOM05D003500 ORTHO05D003919 6.6e-12 75.5 253 32.0
BcaC08g43415 Brassica carinata HOM05D003500 ORTHO05D003919 1.1e-11 74.7 258 28.7
Thecc.06G088400 Theobroma cacao HOM05D003500 ORTHO05D003919 1.5e-11 74.3 179 34.1
AL7G19270 Arabidopsis lyrata HOM05D002156 ORTHO05D003919 3.3e-11 73.2 201 33.8
MSTRG.4733 Avicennia marina HOM05D003500 ORTHO05D003919 3.3e-11 73.2 271 29.9
Os01g0863400 Oryza sativa ssp. japonica HOM05D003500 ORTHO05D003919 3.3e-11 73.2 301 26.9
Rhsim08G0221500 Rhododendron simsii HOM05D003500 ORTHO05D003919 3.3e-11 73.2 179 32.4
A08p18080 Brassica napus HOM05D003500 ORTHO05D003919 4.3e-11 72.8 129 35.7
Glyma.08G206700 Glycine max HOM05D003500 ORTHO05D003919 4.3e-11 72.8 317 30.0
Carub.0001s4135 Capsella rubella HOM05D003500 ORTHO05D003919 5.6e-11 72.4 268 30.2
COL.COLO4_30382 Corchorus olitorius HOM05D003500 ORTHO05D003919 5.6e-11 72.4 175 30.3
SalBow2G0526 Salvia bowleyana HOM05D003500 ORTHO05D003919 5.6e-11 72.4 263 29.3
SGA_v2.0_scaffold68G23002 Striga asiatica HOM05D003500 ORTHO05D003919 7.3e-11 72.0 266 29.7
C01p06230 Brassica napus HOM05D003500 ORTHO05D003919 9.6e-11 71.6 184 31.5
COL.COLO4_18713 Corchorus olitorius HOM05D003500 ORTHO05D003919 9.6e-11 71.6 250 28.4
MBI11_g07535_MAGBIO Magnolia biondii HOM05D003500 ORTHO05D003919 9.6e-11 71.6 265 29.8
Medtr4g012520 Medicago truncatula HOM05D003500 ORTHO05D003919 1.6e-10 70.9 282 29.8
ECA233G0641 Erigeron canadensis HOM05D003500 ORTHO05D003919 2.1e-10 70.5 251 29.1
unitig_32.g11118 Utricularia gibba HOM05D003500 ORTHO05D003919 2.1e-10 70.5 286 29.0
arahy.Tifrunner.gnm1.ann1.AD7SDK Arachis hypogaea HOM05D003500 ORTHO05D003919 3.6e-10 69.7 291 28.2
Duzib235G1266 Durio zibethinus HOM05D003500 ORTHO05D003919 3.6e-10 69.7 141 34.8
Sabra06G0191500 Salix brachista HOM05D003500 ORTHO05D003919 4.7e-10 69.3 105 47.6
Zm00001eb366780 Zea mays HOM05D039918 ORTHO05D003919 4.7e-10 69.3 126 35.7
ATR0051G010 Amborella trichopoda HOM05D003500 ORTHO05D003919 6.2e-10 68.9 130 36.9
arahy.Tifrunner.gnm1.ann1.Y86J0E Arachis hypogaea HOM05D003500 ORTHO05D003919 1.1e-09 68.2 301 29.2
CANSAT56G2888 Cannabis sativa HOM05D003500 ORTHO05D003919 1.1e-09 68.2 189 31.7
CARHR042490 Cardamine hirsuta HOM05D003500 ORTHO05D003919 1.1e-09 68.2 263 30.4
Manes.11G047100 Manihot esculenta HOM05D003500 ORTHO05D003919 1.1e-09 68.2 273 28.2
HanXRQChr02g0053631 Helianthus annuus HOM05D003500 ORTHO05D003919 1.8e-09 67.4 252 31.3
AL1G60570 Arabidopsis lyrata HOM05D003500 ORTHO05D003919 2.4e-09 67.0 245 29.4
Eucgr.F03015 Eucalyptus grandis HOM05D003500 ORTHO05D003919 4.0e-09 66.2 255 30.6
BcaB02g11002 Brassica carinata HOM05D003500 ORTHO05D003919 5.2e-09 65.9 250 29.6
Peaxi162Scf00015g10038 Petunia axillaris HOM05D003500 ORTHO05D003919 5.2e-09 65.9 173 30.6
Psat7g252240 Pisum sativum HOM05D003500 ORTHO05D003919 5.2e-09 65.9 296 29.7
Glyma.07G006100 Glycine max HOM05D003500 ORTHO05D003919 6.9e-09 65.5 300 28.7
Gohir.A02G121400 Gossypium hirsutum HOM05D003500 ORTHO05D003919 6.9e-09 65.5 137 32.8
Gohir.D03G063800 Gossypium hirsutum HOM05D003500 ORTHO05D003919 6.9e-09 65.5 136 34.6
Gorai.002G059400 Gossypium raimondii HOM05D003500 ORTHO05D003919 6.9e-09 65.5 137 33.6
Nitab4.5_0005851g0060 Nicotiana tabacum HOM05D003500 ORTHO05D003919 9.0e-09 65.1 181 32.6
Sed0015651 Sechium edule HOM05D003500 ORTHO05D003919 1.2e-08 64.7 289 28.7
Solyc03g120180.3 Solanum lycopersicum HOM05D003500 ORTHO05D003919 1.2e-08 64.7 135 37.0
Manes.04G123600 Manihot esculenta HOM05D003500 ORTHO05D003919 3.4e-08 63.2 216 30.1
HanXRQChr17g0541731 Helianthus annuus HOM05D003500 ORTHO05D003919 9.9e-08 61.6 248 27.8
CSS0016282 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 1.3e-07 61.2 80 47.5
CSS0048346 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 1.3e-07 61.2 80 47.5
Lalb_Chr04g0262681 Lupinus albus HOM05D003500 ORTHO05D003919 1.3e-07 61.2 300 27.0
Nitab4.5_0000671g0100 Nicotiana tabacum HOM05D003500 ORTHO05D003919 1.3e-07 61.2 206 29.6
Cpa.g.sc205.12 Carica papaya HOM05D003500 ORTHO05D003919 1.7e-07 60.8 61 60.7
unitig_899.g14777 Utricularia gibba HOM05D003500 ORTHO05D003919 2.2e-07 60.5 242 32.6
Peaxi162Scf01026g00254 Petunia axillaris HOM05D003500 ORTHO05D003919 6.4e-07 58.9 263 29.7
Phvul.010G150500 Phaseolus vulgaris HOM05D003500 ORTHO05D003919 8.4e-07 58.5 325 27.7
Lalb_Chr01g0012691 Lupinus albus HOM05D003500 ORTHO05D003919 4.2e-06 56.2 131 29.8
Mapoly0020s0159 Marchantia polymorpha HOM05D003500 ORTHO05D003919 7.1e-06 55.5 302 24.5
Lsat_1_v5_gn_6_63900 Lactuca sativa HOM05D003500 ORTHO05D003919 9.3e-06 55.1 241 28.6


User provided reference genes

Program Settings