Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0305451 Rosa chinensis HOM05D005081 ORTHO05D005506 1.1e-126 456.8 271 100.0
FAN20G0355 Fragaria x ananassa HOM05D026897 ORTHO05D005506 1.4e-84 317.0 279 76.7
FvH4_2g36450 Fragaria vesca HOM05D026897 ORTHO05D005506 4.1e-84 315.5 279 68.8
FAN27G3206 Fragaria x ananassa HOM05D026897 ORTHO05D005506 1.9e-81 306.6 276 67.0
FAN15G2850 Fragaria x ananassa HOM05D026897 ORTHO05D005506 6.3e-77 291.6 279 64.2
MD15G1102900 Malus domestica HOM05D005081 ORTHO05D005506 3.2e-44 183.0 276 44.9
MD08G1124200 Malus domestica HOM05D005081 ORTHO05D005506 1.7e-42 177.2 287 42.5
Prupe.1G455900 Prunus persica HOM05D005081 ORTHO05D005506 2.3e-42 176.8 278 42.8
QL12p025899 Quercus lobata HOM05D005081 ORTHO05D005506 3.4e-30 136.3 186 42.5
Duzib168G0721 Durio zibethinus HOM05D005081 ORTHO05D005506 1.5e-25 120.9 182 41.8
Thecc.09G002900 Theobroma cacao HOM05D005081 ORTHO05D005506 4.0e-23 112.8 164 39.0
TAR625G0352 Trochodendron aralioides HOM05D005081 ORTHO05D005506 1.7e-21 107.5 177 39.5
TAR383G1035 Trochodendron aralioides HOM05D005081 ORTHO05D005506 2.9e-21 106.7 155 42.6
Atru.chr7.2685 Acer truncatum HOM05D005081 ORTHO05D005506 3.8e-21 106.3 146 45.9
Lalb_Chr11g0064261 Lupinus albus HOM05D005081 ORTHO05D005506 3.5e-19 99.8 154 40.3
MBI13_g31561_MAGBIO Magnolia biondii HOM05D005081 ORTHO05D005506 9.6e-17 91.7 173 40.5
GSVIVG01035163001 Vitis vinifera HOM05D005081 ORTHO05D005506 1.2e-16 91.3 163 38.7
CiPaw.15G154600 Carya illinoinensis HOM05D005081 ORTHO05D005506 2.1e-16 90.5 170 37.1
MBI16_g18201_MAGBIO Magnolia biondii HOM05D005081 ORTHO05D005506 2.1e-16 90.5 169 37.3
Aqoxy7G02679 Aquilegia oxysepala HOM05D005081 ORTHO05D005506 2.8e-16 90.1 170 40.0
QL11p009451 Quercus lobata HOM05D005081 ORTHO05D005506 4.7e-16 89.4 179 34.6
FAN12G4058 Fragaria x ananassa HOM05D005081 ORTHO05D005506 1.1e-15 88.2 163 35.0
FvH4_4g06450 Fragaria vesca HOM05D005081 ORTHO05D005506 1.4e-15 87.8 162 35.2
Nitab4.5_0010835g0010 Nicotiana tabacum HOM05D005081 ORTHO05D005506 2.4e-15 87.0 172 34.9
vmacro20793 Vaccinium macrocarpon HOM05D005081 ORTHO05D005506 2.4e-15 87.0 170 38.2
CiPaw.16G103000 Carya illinoinensis HOM05D005081 ORTHO05D005506 9.0e-15 85.1 164 34.8
PGSC0003DMG400013692 Solanum tuberosum HOM05D005081 ORTHO05D005506 9.0e-15 85.1 194 35.1
Glyma.04G077700 Glycine max HOM05D027503 ORTHO05D005506 1.2e-14 84.7 115 40.0
CSS0043250 Camellia sinensis var. sinensis HOM05D005081 ORTHO05D005506 1.5e-14 84.3 157 34.4
Glyma.06G078900 Glycine max HOM05D027503 ORTHO05D005506 2.6e-14 83.6 116 37.1
Nitab4.5_0011475g0010 Nicotiana tabacum HOM05D005081 ORTHO05D005506 3.4e-14 83.2 173 33.5
Actinidia31880 Actinidia chinensis HOM05D005081 ORTHO05D005506 4.4e-14 82.8 173 34.7
Actinidia38513 Actinidia chinensis HOM05D005081 ORTHO05D005506 5.8e-14 82.4 161 32.3
Sopen00g006190 Solanum pennellii HOM05D005081 ORTHO05D005506 7.6e-14 82.0 197 34.5
Actinidia29969 Actinidia chinensis HOM05D005081 ORTHO05D005506 2.2e-13 80.5 161 32.9
Manes.15G189400 Manihot esculenta HOM05D005081 ORTHO05D005506 2.2e-13 80.5 171 33.3
MSTRG.10457 Avicennia marina HOM05D005081 ORTHO05D005506 2.9e-13 80.1 170 32.4
Hma1.2p1_0022F.1_g014780 Hydrangea macrophylla HOM05D005081 ORTHO05D005506 2.9e-13 80.1 173 35.3
Nitab4.5_0000833g0060 Nicotiana tabacum HOM05D005081 ORTHO05D005506 2.9e-13 80.1 172 33.1
Lsat_1_v5_gn_7_59220 Lactuca sativa HOM05D005081 ORTHO05D005506 3.8e-13 79.7 158 34.8
Cpa.g.sc115.44 Carica papaya HOM05D005081 ORTHO05D005506 4.9e-13 79.3 191 31.9
FAN07G0684 Fragaria x ananassa HOM05D005081 ORTHO05D005506 6.4e-13 79.0 163 33.1
Oeu044689.1 Olea europaea HOM05D005081 ORTHO05D005506 6.4e-13 79.0 174 35.1
CsaV3_1G032220 Cucumis sativus L. HOM05D005081 ORTHO05D005506 8.4e-13 78.6 282 27.0
Duzib170G0058 Durio zibethinus HOM05D005081 ORTHO05D005506 1.1e-12 78.2 164 32.9
FAN22G0520 Fragaria x ananassa HOM05D005081 ORTHO05D005506 1.1e-12 78.2 163 33.1
PSO170G2950 Papaver somniferum HOM05D005081 ORTHO05D005506 1.1e-12 78.2 173 34.1
FAN17G0390 Fragaria x ananassa HOM05D005081 ORTHO05D005506 1.9e-12 77.4 160 33.1
PSO063G3463 Papaver somniferum HOM05D005081 ORTHO05D005506 1.9e-12 77.4 174 35.1
Sed0028150 Sechium edule HOM05D005081 ORTHO05D005506 1.9e-12 77.4 165 32.1
Gohir.D04G006900 Gossypium hirsutum HOM05D005081 ORTHO05D005506 2.4e-12 77.0 172 36.0
Hma1.2p1_0022F.1_g014783 Hydrangea macrophylla HOM05D005081 ORTHO05D005506 2.4e-12 77.0 180 34.4
Solyc05g046310.3 Solanum lycopersicum HOM05D005081 ORTHO05D005506 2.4e-12 77.0 192 31.8
ClCG06G014000 Citrullus lanatus HOM05D005081 ORTHO05D005506 3.2e-12 76.6 173 30.1
Gohir.A05G408500 Gossypium hirsutum HOM05D005081 ORTHO05D005506 3.2e-12 76.6 173 35.8
MD13G1236100 Malus domestica HOM05D005081 ORTHO05D005506 3.2e-12 76.6 163 35.6
ECA240G1118 Erigeron canadensis HOM05D005081 ORTHO05D005506 1.2e-11 74.7 163 32.5
Nitab4.5_0000053g0180 Nicotiana tabacum HOM05D005081 ORTHO05D005506 1.2e-11 74.7 169 34.3
Haze_19038 Corylus avellana HOM05D001026 ORTHO05D003027 1.6e-11 74.3 197 32.5
MELO3C017390.2 Cucumis melo HOM05D005081 ORTHO05D005506 1.6e-11 74.3 180 29.4
HanXRQChr03g0067191 Helianthus annuus HOM05D005081 ORTHO05D005506 2.1e-11 73.9 162 30.9
Rhsim01G0113200 Rhododendron simsii HOM05D005081 ORTHO05D005506 3.5e-11 73.2 164 34.8
Eucgr.C02188 Eucalyptus grandis HOM05D005081 ORTHO05D005506 4.6e-11 72.8 156 29.5
TWI32G0620 Tripterygium wilfordii HOM05D005081 ORTHO05D005506 4.6e-11 72.8 164 34.1
Prupe.1G067800 Prunus persica HOM05D005081 ORTHO05D005506 7.8e-11 72.0 163 36.8
Atru.chr12.2077 Acer truncatum HOM05D005081 ORTHO05D005506 1.0e-10 71.6 171 32.2
Ciclev10012648m.g Citrus clementina HOM05D005081 ORTHO05D005506 1.0e-10 71.6 159 33.3
SGA_v2.0_scaffold63G21842 Striga asiatica HOM05D005081 ORTHO05D005506 1.0e-10 71.6 177 28.8
RcHm_v2.0_Chr4g0398241 Rosa chinensis HOM05D005081 ORTHO05D005506 1.3e-10 71.2 194 30.9
Oeu008926.1 Olea europaea HOM05D005081 ORTHO05D005506 2.3e-10 70.5 175 32.0
AUR62033253 Chenopodium quinoa HOM05D005081 ORTHO05D005506 3.0e-10 70.1 285 28.1
AUR62021338 Chenopodium quinoa HOM05D005081 ORTHO05D005506 5.1e-10 69.3 175 35.4
Psat2g035320 Pisum sativum HOM05D027503 ORTHO05D005506 1.1e-09 68.2 149 32.2
Ah.14g083630 Amaranthus hybridus HOM05D005081 ORTHO05D005506 4.3e-09 66.2 158 31.0
HanXRQChr10g0303491 Helianthus annuus HOM05D005081 ORTHO05D005506 5.6e-09 65.9 167 31.1
Migut.L01903 Erythranthe guttata HOM05D005081 ORTHO05D005506 1.3e-08 64.7 168 28.6
Medtr8g101480 Medicago truncatula HOM05D005081 ORTHO05D005506 1.6e-08 64.3 175 30.9
THA.LOC104826579 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 2.1e-08 63.9 165 29.1
MSTRG.26528 Avicennia marina HOM05D005081 ORTHO05D005506 8.1e-08 62.0 179 28.5
Glyma.08G028300 Glycine max HOM05D005081 ORTHO05D005506 1.1e-07 61.6 178 32.6
SalBow6G6882 Salvia bowleyana HOM05D005081 ORTHO05D005506 1.1e-07 61.6 192 31.2
Lalb_Chr05g0223691 Lupinus albus HOM05D005081 ORTHO05D005506 2.4e-07 60.5 175 28.6
PGR044G2548 Punica granatum HOM05D005081 ORTHO05D005506 4.0e-07 59.7 171 30.4
Thhalv10003466m.g Eutrema salsugineum HOM05D005081 ORTHO05D005506 2.0e-06 57.4 183 29.0
Peaxi162Scf00083g00112 Petunia axillaris HOM05D005081 ORTHO05D005506 2.0e-06 57.4 103 36.9
Peaxi162Scf00566g00025 Petunia axillaris HOM05D005081 ORTHO05D005506 2.6e-06 57.0 103 35.9
Peaxi162Scf01260g00001 Petunia axillaris HOM05D005081 ORTHO05D005506 5.8e-06 55.8 103 35.0


User provided reference genes

Program Settings