Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0305311 Rosa chinensis HOM05D003201 ORTHO05D008914 6.6e-162 573.9 280 100.0
FvH4_2g36540 Fragaria vesca HOM05D003201 ORTHO05D008914 5.6e-145 517.7 282 90.1
FAN15G0760 Fragaria x ananassa HOM05D003201 ORTHO05D008914 1.4e-143 513.1 282 90.1
FAN20G1097 Fragaria x ananassa HOM05D000163 ORTHO05D008914 3.6e-120 435.3 251 86.1
Prupe.1G456900 Prunus persica HOM05D003201 ORTHO05D008914 7.6e-118 427.6 281 76.9
MD15G1105100 Malus domestica HOM05D003201 ORTHO05D008914 1.2e-115 420.2 279 73.1
QL12p025722 Quercus lobata HOM05D003201 ORTHO05D008914 1.2e-110 403.7 275 69.5
CSS0009288 Camellia sinensis var. sinensis HOM05D003201 ORTHO05D008914 3.1e-103 379.0 279 65.9
CSS0050223 Camellia sinensis var. sinensis HOM05D003201 ORTHO05D008914 5.3e-103 378.3 279 65.9
ClCG08G012570 Citrullus lanatus HOM05D003201 ORTHO05D008914 2.9e-101 372.5 281 64.8
Manes.02G219100 Manihot esculenta HOM05D003201 ORTHO05D008914 4.2e-100 368.6 275 65.5
CiPaw.07G210300 Carya illinoinensis HOM05D003201 ORTHO05D008914 5.5e-100 368.2 280 63.6
MELO3C011176.2 Cucumis melo HOM05D003201 ORTHO05D008914 7.1e-100 367.9 280 63.6
Gohir.D12G205000 Gossypium hirsutum HOM05D003201 ORTHO05D008914 4.6e-99 365.2 277 62.8
Gohir.A12G202300 Gossypium hirsutum HOM05D003201 ORTHO05D008914 1.1e-97 360.5 277 62.1
CANSAT54G1971 Cannabis sativa HOM05D003201 ORTHO05D008914 1.9e-97 359.8 281 63.7
GSVIVG01035604001 Vitis vinifera HOM05D003201 ORTHO05D008914 2.5e-97 359.4 275 64.7
Aqoxy7G00979 Aquilegia oxysepala HOM05D003201 ORTHO05D008914 5.7e-97 358.2 288 62.2
Dinv37468 Davidia involucrata HOM05D003201 ORTHO05D008914 5.7e-97 358.2 235 71.5
Duzib084G1420 Durio zibethinus HOM05D003201 ORTHO05D008914 2.8e-96 355.9 285 63.2
CsaV3_2G031270 Cucumis sativus L. HOM05D003201 ORTHO05D008914 3.7e-96 355.5 284 62.3
Gorai.008G219900 Gossypium raimondii HOM05D003201 ORTHO05D008914 4.8e-96 355.1 278 61.9
Thecc.03G318200 Theobroma cacao HOM05D003201 ORTHO05D008914 1.1e-95 354.0 278 62.6
Actinidia29333 Actinidia chinensis HOM05D003201 ORTHO05D008914 9.0e-95 350.9 280 62.9
Ciclev10016172m.g Citrus clementina HOM05D003201 ORTHO05D008914 2.0e-94 349.7 275 61.8
Glyma.06G078200 Glycine max HOM05D003201 ORTHO05D008914 7.7e-94 347.8 281 60.5
Psat5g023760 Pisum sativum HOM05D003201 ORTHO05D008914 3.8e-93 345.5 284 58.1
Cpa.g.sc30.52 Carica papaya HOM05D003201 ORTHO05D008914 1.4e-92 343.6 275 58.9
TPR.G12401 Trifolium pratense HOM05D003201 ORTHO05D008914 2.5e-92 342.8 282 59.9
DCAR_002183 Daucus carota HOM05D003201 ORTHO05D008914 7.2e-92 341.3 278 60.8
Nitab4.5_0000391g0210 Nicotiana tabacum HOM05D003201 ORTHO05D008914 4.6e-91 338.6 279 60.2
Lalb_Chr11g0064231 Lupinus albus HOM05D003201 ORTHO05D008914 6.1e-91 338.2 276 62.3
FAN27G2114 Fragaria x ananassa HOM05D000163 ORTHO05D000219 1.0e-90 337.4 218 80.7
PGSC0003DMG402028340 Solanum tuberosum HOM05D003201 ORTHO05D008914 1.8e-90 336.7 280 59.6
CAN.G964.23 Capsicum annuum HOM05D003201 ORTHO05D008914 5.1e-90 335.1 280 60.0
Solyc05g012940.4 Solanum lycopersicum HOM05D003201 ORTHO05D008914 8.8e-90 334.3 281 60.5
Peaxi162Scf00314g00636 Petunia axillaris HOM05D003201 ORTHO05D008914 1.1e-89 334.0 279 59.5
Nitab4.5_0012553g0020 Nicotiana tabacum HOM05D003201 ORTHO05D008914 1.5e-89 333.6 275 59.3
Eucgr.E04307 Eucalyptus grandis HOM05D003201 ORTHO05D008914 1.7e-88 330.1 273 59.3
BraA01t01146Z Brassica rapa HOM05D003201 ORTHO05D008914 3.7e-88 328.9 273 57.1
SalBow8G4280 Salvia bowleyana HOM05D003201 ORTHO05D008914 3.7e-88 328.9 279 55.2
Sopen05g007740 Solanum pennellii HOM05D003201 ORTHO05D008914 3.7e-88 328.9 281 60.1
Hund03239 Selenicereus undatus HOM05D003201 ORTHO05D008914 1.1e-87 327.4 280 58.6
CARHR227150 Cardamine hirsuta HOM05D003201 ORTHO05D008914 1.4e-87 327.0 278 57.6
Glyma.04G077000 Glycine max HOM05D003201 ORTHO05D008914 1.4e-87 327.0 280 57.9
AUR62028026 Chenopodium quinoa HOM05D003201 ORTHO05D008914 2.4e-87 326.2 279 56.3
Lj1g0010900 Lotus japonicus HOM05D003201 ORTHO05D008914 2.4e-87 326.2 282 58.2
BolC7t45584H Brassica oleracea HOM05D000936 ORTHO05D008914 3.1e-87 325.9 276 56.9
Cc11_g12550 Coffea canephora HOM05D003201 ORTHO05D008914 3.1e-87 325.9 277 58.1
A03p52400 Brassica napus HOM05D000936 ORTHO05D008914 5.3e-87 325.1 276 57.2
BcaC06g30651 Brassica carinata HOM05D003201 ORTHO05D008914 6.9e-87 324.7 276 56.5
THA.LOC104811993 Tarenaya hassleriana HOM05D003201 ORTHO05D008914 9.1e-87 324.3 278 57.2
A01p12040 Brassica napus HOM05D003201 ORTHO05D008914 1.2e-86 323.9 273 56.8
Rhsim07G0174100 Rhododendron simsii HOM05D003201 ORTHO05D008914 1.5e-86 323.6 374 47.3
TWI18G0285 Tripterygium wilfordii HOM05D003201 ORTHO05D008914 2.6e-86 322.8 268 59.7
Aa31LG6G2740 Aethionema arabicum HOM05D003201 ORTHO05D008914 3.4e-86 322.4 279 57.7
AT4G20325 Arabidopsis thaliana HOM05D003201 ORTHO05D008914 4.5e-86 322.0 276 56.5
BcaNung03501 Brassica carinata HOM05D003201 ORTHO05D008914 4.5e-86 322.0 276 56.2
C07p50860 Brassica napus HOM05D000936 ORTHO05D008914 4.5e-86 322.0 276 56.2
BolC1t01393H Brassica oleracea HOM05D000280 ORTHO05D004510 7.7e-86 321.2 273 55.3
Potri.006G280600 Populus trichocarpa HOM05D003201 ORTHO05D008914 7.7e-86 321.2 274 61.7
Atru.BG.264.p Acer truncatum HOM05D003201 ORTHO05D008914 2.2e-85 319.7 267 61.0
SGA_v2.0_scaffold45G16974 Striga asiatica HOM05D003201 ORTHO05D008914 2.2e-85 319.7 274 55.5
C01p14340 Brassica napus HOM05D003201 ORTHO05D008914 2.9e-85 319.3 272 55.1
Thhalv10025951m.g Eutrema salsugineum HOM05D003201 ORTHO05D008914 3.8e-85 318.9 276 54.7
AL7G33570 Arabidopsis lyrata HOM05D003201 ORTHO05D008914 6.5e-85 318.2 276 56.2
Migut.E00069 Erythranthe guttata HOM05D003201 ORTHO05D008914 6.5e-85 318.2 279 54.5
HanXRQChr15g0468831 Helianthus annuus HOM05D003201 ORTHO05D008914 1.4e-84 317.0 282 55.7
arahy.Tifrunner.gnm1.ann1.6BLG7S Arachis hypogaea HOM05D003201 ORTHO05D008914 4.2e-84 315.5 306 52.3
PGR042G2091 Punica granatum HOM05D003201 ORTHO05D008914 4.2e-84 315.5 278 58.6
PSO782G1293 Papaver somniferum HOM05D003201 ORTHO05D008914 1.6e-83 313.5 283 55.5
Sp7g18670 Schrenkiella parvula HOM05D003201 ORTHO05D008914 2.1e-83 313.2 276 55.4
Carub.0007s2085 Capsella rubella HOM05D003201 ORTHO05D008914 2.7e-83 312.8 276 55.8
arahy.Tifrunner.gnm1.ann1.N5J460 Arachis hypogaea HOM05D003201 ORTHO05D008914 6.1e-83 311.6 313 50.8
BraA03t14319Z Brassica rapa HOM05D003201 ORTHO05D008914 3.0e-82 309.3 276 54.7
ECA233G2337 Erigeron canadensis HOM05D004148 ORTHO05D004709 6.7e-82 308.1 274 54.7
EL10Ac8g19259 Beta vulgaris HOM05D003201 ORTHO05D008914 7.4e-81 304.7 279 52.7
VMungo1309G0938 Vigna mungo HOM05D003201 ORTHO05D008914 1.3e-80 303.9 354 46.0
Ca_15643_v3 Cicer arietinum L. HOM05D000163 ORTHO05D000219 1.7e-80 303.5 267 54.7
BcaNung03722 Brassica carinata HOM05D000936 ORTHO05D001411 2.6e-78 296.2 276 52.2
Phvul.009G102800 Phaseolus vulgaris HOM05D003201 ORTHO05D008914 2.2e-77 293.1 204 63.7
Lsat_1_v5_gn_5_73181 Lactuca sativa HOM05D003201 ORTHO05D008914 3.6e-75 285.8 272 51.1
HPP92_024271 Vanilla planifolia HOM05D003201 ORTHO05D008914 2.0e-73 280.0 252 55.6
AUR62020698 Chenopodium quinoa HOM05D003201 ORTHO05D008914 5.3e-71 271.9 279 49.1
ATR0686G110 Amborella trichopoda HOM05D003201 ORTHO05D008914 7.0e-71 271.6 244 55.7
vmacro05085 Vaccinium macrocarpon HOM05D003201 ORTHO05D008914 1.3e-69 267.3 499 35.1
Sc23g0004340 Simmondsia chinensis HOM05D003201 ORTHO05D008914 8.5e-69 264.6 209 59.8
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 4.7e-67 258.8 317 47.6
SEGI_35572 Sequoiadendron giganteum HOM05D003201 ORTHO05D008914 3.7e-64 249.2 281 45.9
TAR636G2614 Trochodendron aralioides HOM05D003201 ORTHO05D008914 8.3e-64 248.1 156 73.7
Sed0017242 Sechium edule HOM05D003201 ORTHO05D008914 8.3e-56 221.5 186 60.8
Potri.006G281101 Populus trichocarpa HOM05D003201 ORTHO05D008914 1.2e-54 217.6 166 63.9
Mapoly0037s0034 Marchantia polymorpha HOM05D003201 ORTHO05D008914 1.6e-51 207.2 209 45.5
AagrBONN_evm.TU.Sc2ySwM_344.2003 Anthoceros agrestis HOM05D003201 ORTHO05D008914 3.4e-49 199.5 213 46.5
unitig_32.g11042 Utricularia gibba HOM05D003201 ORTHO05D008914 3.9e-45 186.0 190 52.1
SMO115G0061 Selaginella moellendorffii HOM05D003201 ORTHO05D008914 5.6e-44 182.2 224 39.7
Pp3c10_22770 Physcomitrium patens HOM05D003201 ORTHO05D008914 3.6e-43 179.5 255 37.6
MD08G1125300 Malus domestica HOM05D003201 ORTHO05D008914 1.2e-41 174.5 221 46.2
SHI31610 Sapria himalayana HOM05D003201 ORTHO05D008914 4.9e-40 169.1 110 65.5
Zm00001eb079750 Zea mays HOM05D003201 ORTHO05D008914 1.6e-38 164.1 197 45.2
Nn7g38306 Nelumbo nucifera HOM05D003201 ORTHO05D008914 2.3e-29 133.7 102 57.8
CDE05G1961 Ceratophyllum demersum HOM05D003201 ORTHO05D008914 1.9e-23 114.0 139 45.3
Hma1.2p1_1357F.1_g277905 Hydrangea macrophylla HOM05D003201 ORTHO05D008914 4.6e-22 109.4 70 62.9
TPR.G12326 Trifolium pratense HOM05D003201 ORTHO05D008914 1.7e-21 107.5 69 69.6
COL.COLO4_10365 Corchorus olitorius HOM05D003201 ORTHO05D008914 4.3e-20 102.8 92 55.4
Os04g0476400 Oryza sativa ssp. japonica HOM05D003201 ORTHO05D008914 2.8e-19 100.1 83 50.6
Cre07.g320800 Chlamydomonas reinhardtii HOM05D003201 ORTHO05D008914 1.3e-16 91.3 325 24.3
CBR_g23989 Chara braunii HOM05D003201 ORTHO05D008914 2.2e-16 90.5 68 51.5
PRCOL_00004174 Prasinoderma coloniale HOM05D003201 ORTHO05D008914 2.4e-15 87.0 197 28.9
Phvul.009G102700 Phaseolus vulgaris HOM05D003201 ORTHO05D008914 8.1e-11 72.0 99 46.5
CBR_g23991 Chara braunii HOM05D003201 ORTHO05D008914 1.7e-08 64.3 46 54.3


User provided reference genes

Program Settings