Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0305001 Rosa chinensis HOM05D001798 ORTHO05D005040 2.7e-62 241.9 126 100.0
FAN20G2332 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.6e-54 216.1 126 89.7
FvH4_2g36750 Fragaria vesca HOM05D001798 ORTHO05D005040 2.7e-54 215.3 126 88.9
FAN27G0855 Fragaria x ananassa HOM05D001798 ORTHO05D005040 2.7e-54 215.3 126 88.9
RcHm_v2.0_Chr1g0336341 Rosa chinensis HOM05D001798 ORTHO05D005040 1.0e-53 213.4 126 88.9
FAN15G2712 Fragaria x ananassa HOM05D001798 ORTHO05D005040 2.9e-48 195.3 117 87.2
Prupe.1G460000 Prunus persica HOM05D001798 ORTHO05D005040 2.9e-32 142.1 128 64.8
MD15G1107700 Malus domestica HOM05D001798 ORTHO05D005040 3.6e-27 125.2 138 54.3
MD08G1128200 Malus domestica HOM05D001798 ORTHO05D005040 6.2e-27 124.4 135 57.0
Manes.03G004000 Manihot esculenta HOM05D001798 ORTHO05D005040 1.4e-23 113.2 117 53.0
CiPaw.08G019800 Carya illinoinensis HOM05D001798 ORTHO05D005040 1.9e-23 112.8 127 54.3
Manes.16G135500 Manihot esculenta HOM05D001798 ORTHO05D005040 3.2e-23 112.1 125 52.8
Atru.chr7.661 Acer truncatum HOM05D001798 ORTHO05D005040 3.0e-21 105.5 120 49.2
Lalb_Chr12g0199341 Lupinus albus HOM05D001798 ORTHO05D005040 8.7e-21 104.0 122 51.6
SGA_v2.0_scaffold12G06063 Striga asiatica HOM05D001798 ORTHO05D005040 1.1e-20 103.6 118 50.0
Dinv41255 Davidia involucrata HOM05D001798 ORTHO05D004054 1.5e-20 103.2 117 56.4
Duzib170G0014 Durio zibethinus HOM05D001798 ORTHO05D005040 2.5e-20 102.4 118 50.0
Ciclev10010207m.g Citrus clementina HOM05D001798 ORTHO05D005040 4.3e-20 101.7 127 53.5
MELO3C017469.2 Cucumis melo HOM05D001798 ORTHO05D005040 5.6e-20 101.3 119 48.7
CsaV3_1G031530 Cucumis sativus L. HOM05D001798 ORTHO05D005040 5.6e-20 101.3 119 48.7
Prupe.1G087800 Prunus persica HOM05D001798 ORTHO05D005040 5.6e-20 101.3 119 51.3
TWI34G0376 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 5.6e-20 101.3 127 49.6
TWI34G1338 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 5.6e-20 101.3 127 48.8
Potri.018G094100 Populus trichocarpa HOM05D001798 ORTHO05D005040 7.3e-20 100.9 112 49.1
Gohir.D06G107900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 9.6e-20 100.5 125 50.4
MSTRG.19701 Avicennia marina HOM05D001798 ORTHO05D005040 1.3e-19 100.1 119 52.9
ClCG06G013270 Citrullus lanatus HOM05D001798 ORTHO05D005040 1.3e-19 100.1 120 47.5
Cfa016621 Carpinus fangiana HOM05D001798 ORTHO05D005040 1.6e-19 99.8 120 50.0
Haze_19626 Corylus avellana HOM05D001798 ORTHO05D005040 1.6e-19 99.8 120 51.7
QL12p025154 Quercus lobata HOM05D001798 ORTHO05D005040 1.6e-19 99.8 117 53.0
SGA_v2.0_scaffold301G47805 Striga asiatica HOM05D000485 ORTHO05D005040 1.6e-19 99.8 119 50.4
Thecc.09G171700 Theobroma cacao HOM05D001798 ORTHO05D005040 1.6e-19 99.8 118 49.2
Ciclev10010310m.g Citrus clementina HOM05D001798 ORTHO05D005040 2.1e-19 99.4 127 52.8
Manes.14G151300 Manihot esculenta HOM05D001798 ORTHO05D005040 2.1e-19 99.4 119 49.6
Ciclev10009891m.g Citrus clementina HOM05D001798 ORTHO05D005040 2.8e-19 99.0 124 49.2
QL02p097578 Quercus lobata HOM05D001798 ORTHO05D005040 3.6e-19 98.6 121 51.2
QL02p097572 Quercus lobata HOM05D001798 ORTHO05D005040 4.8e-19 98.2 127 47.2
Hma1.2p1_1646F.1_g295510 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 8.1e-19 97.4 125 48.8
Hma1.2p1_2478F.1_g322950 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 8.1e-19 97.4 125 48.8
TAR383G0769 Trochodendron aralioides HOM05D001798 ORTHO05D005040 1.1e-18 97.1 116 48.3
CiPaw.07G191500 Carya illinoinensis HOM05D001798 ORTHO05D005040 1.8e-18 96.3 120 46.7
Duzib150G1419 Durio zibethinus HOM05D001798 ORTHO05D005040 1.8e-18 96.3 118 49.2
Sabra18G0080900 Salix brachista HOM05D001798 ORTHO05D005040 1.8e-18 96.3 118 46.6
SalBow6G3226 Salvia bowleyana HOM05D001798 ORTHO05D005040 1.8e-18 96.3 118 49.2
SalBow6G3242 Salvia bowleyana HOM05D001798 ORTHO05D005040 1.8e-18 96.3 118 49.2
Sed0020469 Sechium edule HOM05D001798 ORTHO05D005040 2.4e-18 95.9 120 47.5
MD13G1257600 Malus domestica HOM05D001798 ORTHO05D005040 4.0e-18 95.1 120 48.3
COL.COLO4_36848 Corchorus olitorius HOM05D001798 ORTHO05D005040 5.3e-18 94.7 119 46.2
Cpa.g.sc95.60 Carica papaya HOM05D001798 ORTHO05D005040 6.9e-18 94.4 119 48.7
MSTRG.26226 Avicennia marina HOM05D001798 ORTHO05D005040 9.0e-18 94.0 120 50.8
MD12G1161200 Malus domestica HOM05D001798 ORTHO05D005040 1.5e-17 93.2 119 47.1
SGA_v2.0_scaffold69G23263 Striga asiatica HOM05D001798 ORTHO05D005040 1.5e-17 93.2 117 47.9
Gohir.A08G085900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 2.6e-17 92.4 118 47.5
Gorai.010G122600 Gossypium raimondii HOM05D001798 ORTHO05D005040 2.6e-17 92.4 128 49.2
RcHm_v2.0_Chr4g0402701 Rosa chinensis HOM05D001798 ORTHO05D005040 2.6e-17 92.4 129 50.4
COL.COLO4_19032 Corchorus olitorius HOM05D001798 ORTHO05D005040 3.4e-17 92.0 126 48.4
Migut.J01450 Erythranthe guttata HOM05D001798 ORTHO05D005040 4.4e-17 91.7 116 47.4
Gohir.A06G105500 Gossypium hirsutum HOM05D001798 ORTHO05D005040 4.4e-17 91.7 127 49.6
Gorai.004G100700 Gossypium raimondii HOM05D001798 ORTHO05D005040 4.4e-17 91.7 117 47.0
Haze_21742 Corylus avellana HOM05D001798 ORTHO05D005040 5.8e-17 91.3 121 48.8
FvH4_3g45900 Fragaria vesca HOM05D001798 ORTHO05D005040 5.8e-17 91.3 129 48.1
CSS0007301 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 7.6e-17 90.9 126 46.8
FAN22G0641 Fragaria x ananassa HOM05D001798 ORTHO05D005040 9.9e-17 90.5 132 46.2
Gohir.D08G094900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 9.9e-17 90.5 118 47.5
RcHm_v2.0_Chr4g0402691 Rosa chinensis HOM05D001798 ORTHO05D005040 9.9e-17 90.5 127 48.8
Cfa013271 Carpinus fangiana HOM05D001798 ORTHO05D005040 1.3e-16 90.1 122 47.5
Haze_21741 Corylus avellana HOM05D001798 ORTHO05D005040 1.3e-16 90.1 121 48.8
Haze_21745 Corylus avellana HOM05D001798 ORTHO05D005040 2.2e-16 89.4 122 50.0
Duzib187G0913 Durio zibethinus HOM05D001798 ORTHO05D005040 3.8e-16 88.6 125 48.0
FvH4_4g09360 Fragaria vesca HOM05D001798 ORTHO05D005040 3.8e-16 88.6 129 47.3
Nn2g12701 Nelumbo nucifera HOM05D001798 ORTHO05D005040 3.8e-16 88.6 115 47.8
Potri.006G273500 Populus trichocarpa HOM05D001798 ORTHO05D005040 3.8e-16 88.6 129 48.8
Potri.006G273566 Populus trichocarpa HOM05D001798 ORTHO05D005040 3.8e-16 88.6 129 48.8
Lj4g0012331 Lotus japonicus HOM05D001798 ORTHO05D005040 4.9e-16 88.2 125 45.6
Haze_21738 Corylus avellana HOM05D001798 ORTHO05D005040 6.4e-16 87.8 113 48.7
AUR62020597 Chenopodium quinoa HOM05D001798 ORTHO05D005040 8.4e-16 87.4 124 46.0
Eucgr.C02285 Eucalyptus grandis HOM05D001798 ORTHO05D005040 1.1e-15 87.0 120 44.2
Potri.018G006800 Populus trichocarpa HOM05D001798 ORTHO05D005040 1.1e-15 87.0 124 44.4
Glyma.13G095700 Glycine max HOM05D001798 ORTHO05D005040 1.4e-15 86.7 121 43.8
PGR142G4397 Punica granatum HOM05D001798 ORTHO05D005040 1.4e-15 86.7 124 46.0
Aqoxy7G03082 Aquilegia oxysepala HOM05D001798 ORTHO05D005040 1.9e-15 86.3 122 45.9
CSS0005198 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 1.9e-15 86.3 122 45.9
CSS0011185 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 1.9e-15 86.3 122 45.9
Cfa013270 Carpinus fangiana HOM05D001798 ORTHO05D005040 1.9e-15 86.3 113 49.6
Duzib168G0008 Durio zibethinus HOM05D001798 ORTHO05D005040 1.9e-15 86.3 118 46.6
Glyma.17G064300 Glycine max HOM05D001798 ORTHO05D005040 4.2e-15 85.1 123 41.5
CSS0022506 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 5.4e-15 84.7 122 45.1
SalBow1G2776 Salvia bowleyana HOM05D001798 ORTHO05D005040 7.1e-15 84.3 112 46.4
CSS0019887 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 9.3e-15 84.0 122 45.1
Eucgr.C00167 Eucalyptus grandis HOM05D001798 ORTHO05D005040 9.3e-15 84.0 119 44.5
Thecc.09G007300 Theobroma cacao HOM05D001798 ORTHO05D005040 9.3e-15 84.0 81 55.6
Migut.K00248 Erythranthe guttata HOM05D001798 ORTHO05D005040 1.2e-14 83.6 120 45.8
AUR62009071 Chenopodium quinoa HOM05D001798 ORTHO05D005040 1.6e-14 83.2 125 44.0
Medtr4g128470 Medicago truncatula HOM05D001798 ORTHO05D005040 2.1e-14 82.8 121 43.0
Atru.chr7.2645 Acer truncatum HOM05D001798 ORTHO05D005040 4.6e-14 81.6 133 43.6
Sabra18G0014500 Salix brachista HOM05D000280 ORTHO05D006100 6.0e-14 81.3 126 44.4
TPR.G5377 Trifolium pratense HOM05D001798 ORTHO05D005040 6.0e-14 81.3 118 43.2
VMungo1215G0796 Vigna mungo HOM05D001798 ORTHO05D005040 7.9e-14 80.9 118 41.5
Sabra06G0212200 Salix brachista HOM05D001798 ORTHO05D005040 1.3e-13 80.1 120 46.7
PGSC0003DMG400016261 Solanum tuberosum HOM05D001798 ORTHO05D005040 1.3e-13 80.1 133 41.4
Eucgr.C02286 Eucalyptus grandis HOM05D001798 ORTHO05D005040 1.7e-13 79.7 117 42.7
Sopen11g004390 Solanum pennellii HOM05D001798 ORTHO05D005040 2.3e-13 79.3 129 43.4
MBI16_g35923_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 3.9e-13 78.6 113 42.5
THA.LOC104811795 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 3.9e-13 78.6 129 40.3
MBI16_g35924_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 5.1e-13 78.2 113 42.5
Phvul.003G146800 Phaseolus vulgaris HOM05D001798 ORTHO05D005040 5.1e-13 78.2 118 42.4
Solyc11g008600.1 Solanum lycopersicum HOM05D001798 ORTHO05D005040 5.1e-13 78.2 130 43.8
Psat4g011600 Pisum sativum HOM05D001798 ORTHO05D005040 6.6e-13 77.8 117 45.3
PGSC0003DMG400026318 Solanum tuberosum HOM05D001798 ORTHO05D005040 6.6e-13 77.8 120 42.5
A02p08470 Brassica napus HOM05D001798 ORTHO05D005040 8.7e-13 77.4 123 39.8
BraA02t05918Z Brassica rapa HOM05D001798 ORTHO05D005040 8.7e-13 77.4 123 39.8
MBI16_g35927_MAGBIO Magnolia biondii HOM05D000772 ORTHO05D005040 8.7e-13 77.4 109 42.2
Sabra06G0211900 Salix brachista HOM05D001798 ORTHO05D005040 8.7e-13 77.4 121 44.6
Ah.11g043870 Amaranthus hybridus HOM05D001798 ORTHO05D005040 1.1e-12 77.0 121 43.8
BcaC03g14152 Brassica carinata HOM05D001798 ORTHO05D005040 1.1e-12 77.0 120 41.7
C02p14230 Brassica napus HOM05D001798 ORTHO05D005040 1.1e-12 77.0 120 41.7
BolC2t07547H Brassica oleracea HOM05D001798 ORTHO05D005040 1.1e-12 77.0 120 41.7
CAN.G321.14 Capsicum annuum HOM05D001798 ORTHO05D005040 1.1e-12 77.0 141 41.1
AT5G57510 Arabidopsis thaliana HOM05D001798 ORTHO05D005040 1.9e-12 76.3 122 39.3
CARHR271290 Cardamine hirsuta HOM05D001798 ORTHO05D005040 1.9e-12 76.3 129 36.4
CiPaw.07G212400 Carya illinoinensis HOM05D001798 ORTHO05D005040 1.9e-12 76.3 124 46.0
FAN11G1762 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.9e-12 76.3 101 46.5
THA.LOC104817796 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 1.9e-12 76.3 123 42.3
AL8G33450 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 2.5e-12 75.9 120 40.8
AL8G33510 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 2.5e-12 75.9 120 40.8
Peaxi162Scf00296g00124 Petunia axillaris HOM05D001798 ORTHO05D005040 2.5e-12 75.9 132 40.9
Rhsim01G0006100 Rhododendron simsii HOM05D001798 ORTHO05D005040 4.3e-12 75.1 91 47.3
BcaB08g36104 Brassica carinata HOM05D001798 ORTHO05D005040 5.6e-12 74.7 123 37.4
Ca_21215_v3 Cicer arietinum L. HOM05D001798 ORTHO05D005040 5.6e-12 74.7 116 41.4
Thhalv10015454m.g Eutrema salsugineum HOM05D001798 ORTHO05D005040 7.4e-12 74.3 124 37.9
Sp6g19210 Schrenkiella parvula HOM05D001798 ORTHO05D005040 1.3e-11 73.6 124 37.1
PSO349G0296 Papaver somniferum HOM05D001798 ORTHO05D005040 2.8e-11 72.4 128 41.4
EL10Ac2g03758 Beta vulgaris HOM05D001798 ORTHO05D005040 3.6e-11 72.0 142 39.4
FAN21G0239 Fragaria x ananassa HOM05D001798 ORTHO05D005040 3.6e-11 72.0 101 45.5
Sc01g0002270 Simmondsia chinensis HOM05D001798 ORTHO05D005040 3.6e-11 72.0 130 45.4
Cpa.g.sc23.17 Carica papaya HOM05D001798 ORTHO05D005040 4.8e-11 71.6 116 40.5
Haze_21740 Corylus avellana HOM05D001798 ORTHO05D005040 1.4e-10 70.1 113 43.4
HanXRQChr05g0137241 Helianthus annuus HOM05D001798 ORTHO05D005040 1.8e-10 69.7 140 37.1
CANSAT11G0905 Cannabis sativa HOM05D001798 ORTHO05D005040 9.0e-10 67.4 144 36.1
Lsat_1_v5_gn_8_67120 Lactuca sativa HOM05D001798 ORTHO05D005040 9.0e-10 67.4 133 38.3
CiPaw.08G037100 Carya illinoinensis HOM05D001798 ORTHO05D005040 1.2e-09 67.0 125 36.8
Lsat_1_v5_gn_7_54461 Lactuca sativa HOM05D001798 ORTHO05D005040 1.2e-09 67.0 111 41.4
Carub.0008s1801 Capsella rubella HOM05D001798 ORTHO05D005040 1.5e-09 66.6 121 36.4
Ciclev10010429m.g Citrus clementina HOM05D001798 ORTHO05D005040 2.0e-09 66.2 102 44.1
ECA240G2061 Erigeron canadensis HOM05D001798 ORTHO05D005040 3.4e-09 65.5 129 37.2
AUR62022665 Chenopodium quinoa HOM05D001798 ORTHO05D005040 5.8e-09 64.7 124 37.9
Glyma.04G075600 Glycine max HOM05D021496 ORTHO05D022761 7.6e-09 64.3 111 34.2
Aa31LG3G13380 Aethionema arabicum HOM05D001798 ORTHO05D005040 9.9e-09 63.9 123 35.8
BcaB05g22348 Brassica carinata HOM05D001798 ORTHO05D005040 1.3e-08 63.5 122 36.9
Glyma.06G076800 Glycine max HOM05D021496 ORTHO05D022761 1.3e-08 63.5 120 34.2
Nitab4.5_0004131g0060 Nicotiana tabacum HOM05D001798 ORTHO05D005040 1.3e-08 63.5 118 36.4
HanXRQChr09g0254491 Helianthus annuus HOM05D001798 ORTHO05D005040 1.7e-08 63.2 137 37.2
Nitab4.5_0004131g0070 Nicotiana tabacum HOM05D001798 ORTHO05D005040 8.4e-08 60.8 126 37.3
PGR044G1765 Punica granatum HOM05D001798 ORTHO05D005040 1.1e-07 60.5 137 39.4
Lj1g0012048 Lotus japonicus HOM05D021496 ORTHO05D022761 2.4e-07 59.3 112 33.0
Lalb_Chr08g0243531 Lupinus albus HOM05D021496 ORTHO05D022761 5.5e-07 58.2 127 32.3
BcaC04g19961 Brassica carinata HOM05D001798 ORTHO05D005040 7.1e-07 57.8 75 45.3
BolC9t57787H Brassica oleracea HOM05D001798 ORTHO05D005040 7.1e-07 57.8 75 45.3
CsaV3_3G001020 Cucumis sativus L. HOM05D001798 ORTHO05D022392 1.6e-06 56.6 118 38.1
Sed0003670 Sechium edule HOM05D001798 ORTHO05D022392 1.6e-06 56.6 123 39.0
ClCG10G000980 Citrullus lanatus HOM05D001798 ORTHO05D022392 2.1e-06 56.2 57 56.1
Ah.05g179040 Amaranthus hybridus HOM05D001798 ORTHO05D005040 3.5e-06 55.5 154 33.8


User provided reference genes

Program Settings