Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0304951 Rosa chinensis HOM05D006939 ORTHO05D008616 9.3e-198 693.3 351 100.0
FAN20G0593 Fragaria x ananassa HOM05D006939 ORTHO05D008616 5.7e-179 630.9 351 91.5
FvH4_2g36790 Fragaria vesca HOM05D006939 ORTHO05D008616 3.7e-178 628.2 351 90.9
FAN27G1343 Fragaria x ananassa HOM05D006939 ORTHO05D008616 1.4e-177 626.3 351 90.6
FAN15G1628 Fragaria x ananassa HOM05D006939 ORTHO05D008616 3.6e-165 585.1 351 86.3
Prupe.1G460400 Prunus persica HOM05D006939 ORTHO05D008616 6.3e-154 547.7 355 78.6
MD15G1108100 Malus domestica HOM05D006939 ORTHO05D008616 8.6e-143 510.8 354 76.0
QL12p025112 Quercus lobata HOM05D006939 ORTHO05D008616 2.8e-133 479.2 354 69.5
Atru.chr7.2637 Acer truncatum HOM05D006939 ORTHO05D008616 3.1e-132 475.7 349 69.3
Manes.03G003600 Manihot esculenta HOM05D006939 ORTHO05D008616 2.6e-131 472.6 346 69.4
Ciclev10008814m.g Citrus clementina HOM05D006939 ORTHO05D008616 3.7e-130 468.8 346 70.2
Ca_15668_v3 Cicer arietinum L. HOM05D006939 ORTHO05D008616 2.7e-128 462.6 357 65.5
Glyma.04G075200 Glycine max HOM05D006939 ORTHO05D008616 6.0e-128 461.5 360 65.8
TAR369G0747 Trochodendron aralioides HOM05D006939 ORTHO05D008616 1.7e-127 459.9 354 65.8
Nn8g40552 Nelumbo nucifera HOM05D006939 ORTHO05D008616 2.3e-127 459.5 355 65.4
VMungo1309G0618 Vigna mungo HOM05D006939 ORTHO05D008616 3.0e-127 459.1 355 66.5
Lj1g0013260 Lotus japonicus HOM05D006939 ORTHO05D008616 3.9e-127 458.8 354 66.1
Dinv25196 Davidia involucrata HOM05D006939 ORTHO05D008616 5.0e-127 458.4 352 66.5
Glyma.06G076400 Glycine max HOM05D006939 ORTHO05D008616 2.5e-126 456.1 354 65.3
CiPaw.07G213000 Carya illinoinensis HOM05D006939 ORTHO05D008616 3.3e-126 455.7 354 66.4
CSS0002269 Camellia sinensis var. sinensis HOM05D006939 ORTHO05D008616 2.8e-125 452.6 318 70.8
GSVIVG01035522001 Vitis vinifera HOM05D006939 ORTHO05D008616 7.5e-123 444.5 319 70.2
MBI16_g38081_MAGBIO Magnolia biondii HOM05D006939 ORTHO05D008616 9.8e-123 444.1 351 64.7
Gorai.009G068000 Gossypium raimondii HOM05D006939 ORTHO05D008616 1.7e-122 443.4 323 69.3
Gohir.A05G064600 Gossypium hirsutum HOM05D006939 ORTHO05D008616 2.2e-122 443.0 311 71.7
Gohir.D05G067200 Gossypium hirsutum HOM05D006939 ORTHO05D008616 3.7e-122 442.2 311 70.7
TWI63G0558 Tripterygium wilfordii HOM05D006939 ORTHO05D008616 3.7e-122 442.2 342 66.1
CANSAT25G1759 Cannabis sativa HOM05D006939 ORTHO05D008616 6.4e-122 441.4 370 63.5
Medtr3g108805 Medicago truncatula HOM05D006939 ORTHO05D008616 5.4e-121 438.3 356 63.8
Thecc.09G006900 Theobroma cacao HOM05D006939 ORTHO05D008616 9.2e-121 437.6 316 69.0
Duzib168G0459 Durio zibethinus HOM05D006939 ORTHO05D008616 1.6e-120 436.8 319 68.3
arahy.Tifrunner.gnm1.ann1.8I4SMW Arachis hypogaea HOM05D006939 ORTHO05D008616 2.7e-120 436.0 353 62.9
CsaV3_2G031410 Cucumis sativus L. HOM05D006939 ORTHO05D008616 4.6e-120 435.3 357 64.1
MELO3C011191.2 Cucumis melo HOM05D006939 ORTHO05D008616 7.8e-120 434.5 357 64.1
arahy.Tifrunner.gnm1.ann1.WZEV1S Arachis hypogaea HOM05D006939 ORTHO05D008616 1.0e-119 434.1 353 63.2
Sed0018205 Sechium edule HOM05D006939 ORTHO05D008616 1.0e-119 434.1 356 63.8
Aqoxy7G02987 Aquilegia oxysepala HOM05D006939 ORTHO05D008616 1.3e-119 433.7 359 63.0
Potri.018G005900 Populus trichocarpa HOM05D006939 ORTHO05D008616 1.3e-119 433.7 308 71.1
Lj8C13T0 Lonicera japonica HOM05D006939 ORTHO05D008616 2.3e-119 433.0 315 70.8
Migut.M00074 Erythranthe guttata HOM05D006939 ORTHO05D008616 5.1e-119 431.8 322 67.4
Lalb_Chr08g0243571 Lupinus albus HOM05D006939 ORTHO05D008616 4.3e-118 428.7 346 63.6
Sabra18G0011600 Salix brachista HOM05D006939 ORTHO05D008616 5.6e-118 428.3 312 69.2
Sabra18G0014100 Salix brachista HOM05D006939 ORTHO05D008616 5.6e-118 428.3 312 69.2
PSO170G5391 Papaver somniferum HOM05D006939 ORTHO05D008616 9.5e-118 427.6 362 61.0
TPR.G12361 Trifolium pratense HOM05D006939 ORTHO05D008616 1.6e-117 426.8 351 63.8
PSO063G0559 Papaver somniferum HOM05D006939 ORTHO05D008616 2.8e-117 426.0 362 60.8
PGSC0003DMG400001838 Solanum tuberosum HOM05D006939 ORTHO05D008616 3.6e-117 425.6 315 68.6
Cc02_g39540 Coffea canephora HOM05D006939 ORTHO05D008616 1.8e-116 423.3 312 68.9
Sc09g0010200 Simmondsia chinensis HOM05D006939 ORTHO05D008616 1.5e-115 420.2 313 67.4
Sopen08g026100 Solanum pennellii HOM05D006939 ORTHO05D008616 1.5e-115 420.2 315 68.9
Solyc08g077520.3 Solanum lycopersicum HOM05D006939 ORTHO05D008616 2.0e-115 419.9 315 68.9
Actinidia06924 Actinidia chinensis HOM05D006939 ORTHO05D008616 3.4e-115 419.1 327 67.0
SalBow7G0985 Salvia bowleyana HOM05D006939 ORTHO05D008616 3.4e-115 419.1 315 66.0
CAN.G1445.9 Capsicum annuum HOM05D006939 ORTHO05D008616 9.9e-115 417.5 309 67.6
Eucgr.C04007 Eucalyptus grandis HOM05D006939 ORTHO05D008616 1.1e-113 414.1 320 64.1
THA.LOC104814976 Tarenaya hassleriana HOM05D006939 ORTHO05D008616 3.2e-113 412.5 310 67.1
ClCG08G012690 Citrullus lanatus HOM05D006939 ORTHO05D008616 7.1e-113 411.4 357 63.0
AUR62009066 Chenopodium quinoa HOM05D006939 ORTHO05D008616 4.6e-112 408.7 316 65.5
HanXRQChr12g0379171 Helianthus annuus HOM05D006939 ORTHO05D008616 4.6e-112 408.7 314 66.6
Hund19405 Selenicereus undatus HOM05D006939 ORTHO05D008616 1.3e-111 407.1 344 62.5
ECA240G2907 Erigeron canadensis HOM05D006939 ORTHO05D008616 3.0e-111 406.0 313 66.5
PGR044G1028 Punica granatum HOM05D006939 ORTHO05D008616 3.3e-110 402.5 320 63.4
HPP92_017403 Vanilla planifolia HOM05D006939 ORTHO05D008616 4.7e-109 398.7 320 64.1
CDE02G0224 Ceratophyllum demersum HOM05D006939 ORTHO05D008616 2.6e-107 392.9 306 65.4
Cfa013266 Carpinus fangiana HOM05D006939 ORTHO05D008616 4.4e-107 392.1 275 71.6
Psat5g025040 Pisum sativum HOM05D006939 ORTHO05D008616 3.8e-106 389.0 304 67.1
Peaxi162Scf00084g00007 Petunia axillaris HOM05D006939 ORTHO05D008616 8.4e-106 387.9 294 67.3
MSTRG.14901 Avicennia marina HOM05D006939 ORTHO05D008616 3.2e-105 386.0 312 61.5
AUR62020602 Chenopodium quinoa HOM05D006939 ORTHO05D008616 3.2e-105 386.0 300 65.7
CARHR202610 Cardamine hirsuta HOM05D006939 ORTHO05D008616 1.6e-104 383.6 302 63.6
AL6G21250 Arabidopsis lyrata HOM05D006939 ORTHO05D008616 6.0e-104 381.7 312 60.3
Sp6g32750 Schrenkiella parvula HOM05D006939 ORTHO05D008616 7.8e-104 381.3 311 62.7
unitig_61.g26486 Utricularia gibba HOM05D006939 ORTHO05D008616 2.3e-103 379.8 307 62.9
SGA_v2.0_scaffold73G24476 Striga asiatica HOM05D006939 ORTHO05D008616 3.9e-103 379.0 318 61.9
Aa31LG3G16420 Aethionema arabicum HOM05D006939 ORTHO05D008616 2.5e-102 376.3 321 60.1
Carub.0006s0918 Capsella rubella HOM05D006939 ORTHO05D008616 5.6e-102 375.2 309 61.8
CiPaw.08G019500 Carya illinoinensis HOM05D006939 ORTHO05D008616 5.6e-102 375.2 321 61.1
Oeu040447.1 Olea europaea HOM05D006939 ORTHO05D008616 5.6e-102 375.2 277 67.1
C03p05420 Brassica napus HOM05D006939 ORTHO05D008616 9.6e-102 374.4 310 62.9
DCAR_015445 Daucus carota HOM05D006939 ORTHO05D008616 1.6e-101 373.6 316 60.4
ATR0580G399 Amborella trichopoda HOM05D006939 ORTHO05D008616 2.1e-101 373.2 349 55.3
vmacro04127 Vaccinium macrocarpon HOM05D006939 ORTHO05D008616 2.8e-101 372.9 264 71.2
A03p04710 Brassica napus HOM05D006939 ORTHO05D008616 3.6e-101 372.5 312 62.5
BcaB01g05506 Brassica carinata HOM05D006939 ORTHO05D008616 8.1e-101 371.3 310 62.6
BraA03t09811Z Brassica rapa HOM05D006939 ORTHO05D008616 2.4e-100 369.8 310 62.3
BcaB01g06272 Brassica carinata HOM05D006939 ORTHO05D008616 9.0e-100 367.9 310 61.9
DCAR_026761 Daucus carota HOM05D006939 ORTHO05D008616 1.2e-99 367.5 320 61.6
Rhsim13G0217600 Rhododendron simsii HOM05D006939 ORTHO05D008616 2.0e-99 366.7 414 51.0
Zm00001eb048210 Zea mays HOM05D006939 ORTHO05D008616 2.4e-97 359.8 330 55.5
Lj8C69T1 Lonicera japonica HOM05D006939 ORTHO05D008616 4.2e-97 359.0 315 62.2
SGA_v2.0_scaffold49G18392 Striga asiatica HOM05D002257 ORTHO05D008616 2.3e-95 353.2 314 60.5
BolC3t13053H Brassica oleracea HOM05D006939 ORTHO05D008616 1.1e-94 350.9 294 62.9
Haze_21731 Corylus avellana HOM05D006939 ORTHO05D008616 2.1e-93 346.7 240 72.9
EL10Ac2g03752 Beta vulgaris HOM05D006939 ORTHO05D008616 4.8e-93 345.5 315 58.7
Nitab4.5_0006135g0050 Nicotiana tabacum HOM05D006939 ORTHO05D008616 6.2e-93 345.1 281 63.7
Thhalv10014111m.g Eutrema salsugineum HOM05D006939 ORTHO05D008616 2.0e-91 340.1 316 57.9
EL10Ac5g10928 Beta vulgaris HOM05D006939 ORTHO05D008616 3.5e-88 329.3 263 64.3
AT5G10710 Arabidopsis thaliana HOM05D006939 ORTHO05D008616 1.0e-87 327.8 312 55.8
Nitab4.5_0001255g0030 Nicotiana tabacum HOM05D006939 ORTHO05D008616 5.1e-87 325.5 286 61.2
Lsat_1_v5_gn_5_46220 Lactuca sativa HOM05D006939 ORTHO05D008616 1.3e-82 310.8 313 56.9
Phvul.009G101000 Phaseolus vulgaris HOM05D006939 ORTHO05D008616 8.4e-82 308.1 194 77.3
MD08G1128700 Malus domestica HOM05D006939 ORTHO05D008616 1.0e-50 204.9 214 55.6
SHI21120 Sapria himalayana HOM05D006939 ORTHO05D008616 2.9e-50 203.4 234 50.9
Aqoxy3G02235 Aquilegia oxysepala HOM05D006939 ORTHO05D008616 9.1e-44 181.8 140 64.3
MBI16_g27300_MAGBIO Magnolia biondii HOM05D006939 ORTHO05D008616 3.2e-41 173.3 219 46.1
Mapoly0042s0046 Marchantia polymorpha HOM05D006939 ORTHO05D008616 1.2e-38 164.9 329 35.6
AagrBONN_evm.TU.Sc2ySwM_344.1051 Anthoceros agrestis HOM05D006939 ORTHO05D008616 2.7e-35 153.7 302 34.4
SMO119G0385 Selaginella moellendorffii HOM05D006939 ORTHO05D008616 5.0e-34 149.4 295 33.6
AagrBONN_evm.TU.Sc2ySwM_228.595 Anthoceros agrestis HOM05D006939 ORTHO05D008616 7.2e-33 145.6 311 33.4
Pp3c6_9310 Physcomitrium patens HOM05D006939 ORTHO05D008616 9.4e-33 145.2 305 31.1
Pp3c5_16590 Physcomitrium patens HOM05D006939 ORTHO05D008616 2.6e-30 137.1 314 29.0
BcaB01g06274 Brassica carinata HOM05D006939 ORTHO05D008616 5.7e-30 136.0 129 56.6
Aqoxy1G02501 Aquilegia oxysepala HOM05D006939 ORTHO05D008616 1.7e-29 134.4 241 40.2
CDE05G2180 Ceratophyllum demersum HOM05D006939 ORTHO05D008616 1.6e-24 117.9 138 47.8
Os04g0284100 Oryza sativa ssp. japonica HOM05D006939 ORTHO05D008616 8.9e-23 112.1 77 70.1
COL.COLO4_19037 Corchorus olitorius HOM05D000039 ORTHO05D000870 8.3e-13 79.0 247 28.7


User provided reference genes

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