Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0304921 Rosa chinensis HOM05D001461 ORTHO05D005534 2.9e-63 245.0 118 100.0
Atru.chr9.2071 Acer truncatum HOM05D001461 ORTHO05D005534 2.9e-58 228.4 118 90.7
FAN04G2189 Fragaria x ananassa HOM05D001461 ORTHO05D002801 8.3e-58 226.9 118 89.8
FAN08G0967 Fragaria x ananassa HOM05D001461 ORTHO05D005534 8.3e-58 226.9 118 89.8
Prupe.1G460500 Prunus persica HOM05D001461 ORTHO05D005534 1.8e-57 225.7 118 89.8
RcHm_v2.0_Chr7g0195901 Rosa chinensis HOM05D001461 ORTHO05D005534 1.8e-57 225.7 118 89.0
MD15G1108200 Malus domestica HOM05D001461 ORTHO05D005534 2.4e-57 225.3 118 89.8
FvH4_5g03750 Fragaria vesca HOM05D001461 ORTHO05D005534 4.1e-57 224.6 118 89.0
Prupe.5G111900 Prunus persica HOM05D001461 ORTHO05D005534 7.0e-57 223.8 120 90.0
FAN13G1856 Fragaria x ananassa HOM05D001461 ORTHO05D005534 9.2e-57 223.4 118 88.1
TWI18G0300 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 2.0e-56 222.2 118 88.1
CiPaw.12G086700 Carya illinoinensis HOM05D001461 ORTHO05D005534 2.7e-56 221.9 118 88.1
FAN13G2166 Fragaria x ananassa HOM05D001461 ORTHO05D005534 2.7e-56 221.9 118 88.1
TWI60G0303 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 4.6e-56 221.1 118 87.3
CANSAT21G0685 Cannabis sativa HOM05D001461 ORTHO05D005534 5.9e-56 220.7 116 90.5
GSVIVG01019462001 Vitis vinifera HOM05D001461 ORTHO05D002801 7.8e-56 220.3 116 89.7
COL.COLO4_21750 Corchorus olitorius HOM05D001461 ORTHO05D005534 1.0e-55 219.9 118 86.4
Manes.02G014100 Manihot esculenta HOM05D001461 ORTHO05D005534 1.3e-55 219.5 118 86.4
Potri.003G135100 Populus trichocarpa HOM05D001461 ORTHO05D005534 3.0e-55 218.4 116 90.5
ClCG11G007680 Citrullus lanatus HOM05D001461 ORTHO05D005534 3.9e-55 218.0 119 90.8
Dinv32542 Davidia involucrata HOM05D001461 ORTHO05D005534 3.9e-55 218.0 116 87.1
FAN18G4081 Fragaria x ananassa HOM05D001461 ORTHO05D005534 3.9e-55 218.0 115 90.4
Medtr5g009740 Medicago truncatula HOM05D001461 ORTHO05D005534 5.0e-55 217.6 116 87.9
Actinidia10093 Actinidia chinensis HOM05D001461 ORTHO05D005534 8.6e-55 216.9 116 84.5
Nn7g37350 Nelumbo nucifera HOM05D001461 ORTHO05D005534 8.6e-55 216.9 115 87.8
Thecc.03G290500 Theobroma cacao HOM05D001461 ORTHO05D005534 8.6e-55 216.9 118 86.4
MELO3C008160.2 Cucumis melo HOM05D001461 ORTHO05D005534 1.1e-54 216.5 119 89.9
CsaV3_2G033880 Cucumis sativus L. HOM05D001461 ORTHO05D005534 1.1e-54 216.5 119 89.9
PGR042G3251 Punica granatum HOM05D001461 ORTHO05D005534 1.1e-54 216.5 116 82.8
Gohir.A12G232000 Gossypium hirsutum HOM05D001461 ORTHO05D005534 3.3e-54 214.9 116 87.9
Gohir.D12G235300 Gossypium hirsutum HOM05D001461 ORTHO05D005534 3.3e-54 214.9 116 87.9
Gorai.008G251500 Gossypium raimondii HOM05D001461 ORTHO05D005534 3.3e-54 214.9 116 87.9
Duzib084G0256 Durio zibethinus HOM05D001461 ORTHO05D005534 4.3e-54 214.5 118 83.9
Hma1.2p1_0384F.1_g140900 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 5.6e-54 214.2 116 86.2
Solyc11g062280.2 Solanum lycopersicum HOM05D001461 ORTHO05D005534 5.6e-54 214.2 116 87.1
Sopen11g024260 Solanum pennellii HOM05D001461 ORTHO05D005534 5.6e-54 214.2 116 87.1
PGSC0003DMG401032495 Solanum tuberosum HOM05D001461 ORTHO05D005534 5.6e-54 214.2 116 87.1
Nitab4.5_0002026g0080 Nicotiana tabacum HOM05D001461 ORTHO05D005534 7.3e-54 213.8 116 85.3
Psat2g033040 Pisum sativum HOM05D001461 ORTHO05D005534 7.3e-54 213.8 114 88.6
Lalb_Chr09g0332711 Lupinus albus HOM05D001461 ORTHO05D005534 9.5e-54 213.4 114 86.8
Sed0013897 Sechium edule HOM05D001461 ORTHO05D005534 9.5e-54 213.4 119 88.2
Glyma.01G223800 Glycine max HOM05D001461 ORTHO05D005534 1.6e-53 212.6 116 85.3
HanXRQChr04g0120651 Helianthus annuus HOM05D001461 ORTHO05D005534 1.6e-53 212.6 116 85.3
CSS0041928 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 2.8e-53 211.8 118 81.4
MBI07_g06330_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 2.8e-53 211.8 115 86.1
Peaxi162Scf00029g02519 Petunia axillaris HOM05D001461 ORTHO05D005534 2.8e-53 211.8 116 84.5
PGSC0003DMG400007048 Solanum tuberosum HOM05D001461 ORTHO05D005534 6.2e-53 210.7 116 84.5
CAN.G375.83 Capsicum annuum HOM05D001461 ORTHO05D005534 8.0e-53 210.3 116 85.3
Hma1.2p1_0397F.1_g143760 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 1.0e-52 209.9 115 84.3
Eucgr.E00823 Eucalyptus grandis HOM05D001461 ORTHO05D005534 1.8e-52 209.1 116 81.0
Lsat_1_v5_gn_7_2481 Lactuca sativa HOM05D001461 ORTHO05D005534 2.3e-52 208.8 115 82.6
MBI15_g19879_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 2.3e-52 208.8 115 84.3
TPR.G6688 Trifolium pratense HOM05D001461 ORTHO05D005534 3.1e-52 208.4 116 83.6
arahy.Tifrunner.gnm1.ann1.Z0SXD6 Arachis hypogaea HOM05D001461 ORTHO05D005534 4.0e-52 208.0 116 83.6
LjContig00312_ERROPOS870357g0027559 Lotus japonicus HOM05D001461 ORTHO05D005534 5.2e-52 207.6 116 84.5
Sabra03G0097400 Salix brachista HOM05D001461 ORTHO05D005534 5.2e-52 207.6 127 80.3
Glyma.11G019700 Glycine max HOM05D001461 ORTHO05D005534 1.2e-51 206.5 117 82.9
ECA236G4284 Erigeron canadensis HOM05D001461 ORTHO05D005534 1.5e-51 206.1 116 82.8
Migut.E01260 Erythranthe guttata HOM05D001461 ORTHO05D005534 1.5e-51 206.1 118 79.7
MSTRG.20880 Avicennia marina HOM05D001461 ORTHO05D005534 2.6e-51 205.3 118 80.5
Thhalv10027655m.g Eutrema salsugineum HOM05D001461 ORTHO05D002801 2.6e-51 205.3 117 82.9
Thecc.02G012600 Theobroma cacao HOM05D001461 ORTHO05D005534 2.6e-51 205.3 114 84.2
arahy.Tifrunner.gnm1.ann1.PFJ4ZJ Arachis hypogaea HOM05D001461 ORTHO05D005534 3.4e-51 204.9 116 82.8
Thhalv10023764m.g Eutrema salsugineum HOM05D001461 ORTHO05D005534 5.8e-51 204.1 119 80.7
LjContig00001g0001336 Lotus japonicus HOM05D001461 ORTHO05D005534 5.8e-51 204.1 118 83.9
LjContig00001g0023327 Lotus japonicus HOM05D001461 ORTHO05D005534 5.8e-51 204.1 118 83.9
Migut.B01819 Erythranthe guttata HOM05D001461 ORTHO05D005534 7.5e-51 203.8 118 78.8
VMungo1215G2099 Vigna mungo HOM05D001461 ORTHO05D005534 7.5e-51 203.8 117 83.8
CARHR046740 Cardamine hirsuta HOM05D001461 ORTHO05D005534 9.8e-51 203.4 117 80.3
CARHR212880 Cardamine hirsuta HOM05D001461 ORTHO05D005534 1.3e-50 203.0 116 81.9
DCAR_025235 Daucus carota HOM05D001461 ORTHO05D005534 1.3e-50 203.0 116 80.2
SGA_v2.0_scaffold95G28797 Striga asiatica HOM05D001461 ORTHO05D005534 1.3e-50 203.0 118 80.5
BcaB07g31442 Brassica carinata HOM05D001461 ORTHO05D005534 1.7e-50 202.6 119 79.0
BcaB07g31521 Brassica carinata HOM05D001461 ORTHO05D005534 1.7e-50 202.6 119 79.0
AT5G41650 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 2.2e-50 202.2 118 80.5
Carub.0002s0062 Capsella rubella HOM05D001461 ORTHO05D005534 2.9e-50 201.8 119 79.0
A09p14930 Brassica napus HOM05D001461 ORTHO05D005534 3.7e-50 201.4 119 78.2
BraA09t37138Z Brassica rapa HOM05D001461 ORTHO05D005534 3.7e-50 201.4 119 78.2
SGA_v2.0_scaffold4G02266 Striga asiatica HOM05D001461 ORTHO05D005534 3.7e-50 201.4 118 79.7
AT1G64185 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 4.9e-50 201.1 119 78.2
A09p14170 Brassica napus HOM05D001461 ORTHO05D005534 4.9e-50 201.1 119 78.2
BraA09t37065Z Brassica rapa HOM05D001461 ORTHO05D005534 4.9e-50 201.1 119 78.2
Aa31LG2G1220 Aethionema arabicum HOM05D001461 ORTHO05D002801 6.4e-50 200.7 119 79.0
BcaC04g22537 Brassica carinata HOM05D001461 ORTHO05D005534 6.4e-50 200.7 119 78.2
C09p18050 Brassica napus HOM05D001461 ORTHO05D005534 6.4e-50 200.7 119 78.2
BolC9t54702H Brassica oleracea HOM05D001461 ORTHO05D005534 6.4e-50 200.7 119 78.2
Phvul.002G161800 Phaseolus vulgaris HOM05D001461 ORTHO05D005534 6.4e-50 200.7 117 82.1
Aqoxy6G01758 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 8.3e-50 200.3 114 81.6
Zm00001eb376190 Zea mays HOM05D001461 ORTHO05D005534 1.1e-49 199.9 119 80.7
Zm00001eb376220 Zea mays HOM05D001461 ORTHO05D005534 1.1e-49 199.9 119 80.7
Zm00001eb376310 Zea mays HOM05D001461 ORTHO05D005534 1.1e-49 199.9 119 80.7
Zm00001eb376910 Zea mays HOM05D001461 ORTHO05D005534 1.1e-49 199.9 119 80.7
Zm00001eb376940 Zea mays HOM05D001461 ORTHO05D005534 1.1e-49 199.9 119 80.7
C09p17080 Brassica napus HOM05D001461 ORTHO05D005534 1.4e-49 199.5 119 77.3
BolC9t54606H Brassica oleracea HOM05D001461 ORTHO05D005534 1.4e-49 199.5 119 77.3
Aqoxy6G01756 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 2.4e-49 198.7 114 81.6
Zm00001eb376350 Zea mays HOM05D001461 ORTHO05D005534 3.2e-49 198.4 119 79.8
Zm00001eb376260 Zea mays HOM05D001461 ORTHO05D005534 5.4e-49 197.6 119 79.8
ECA233G4373 Erigeron canadensis HOM05D001461 ORTHO05D005534 9.2e-49 196.8 117 79.5
unitig_62.g23802 Utricularia gibba HOM05D001461 ORTHO05D005534 1.2e-48 196.4 130 70.8
Cc03_g08310 Coffea canephora HOM05D001461 ORTHO05D005534 1.6e-48 196.1 118 80.5
PSO384G4702 Papaver somniferum HOM05D001461 ORTHO05D005534 1.6e-48 196.1 121 76.9
AL2G10830 Arabidopsis lyrata HOM05D001461 ORTHO05D005534 2.0e-48 195.7 119 76.5
ATR0580G205 Amborella trichopoda HOM05D001461 ORTHO05D005534 2.7e-48 195.3 114 80.7
Os06g0158700 Oryza sativa ssp. japonica HOM05D001461 ORTHO05D005534 7.8e-48 193.7 118 77.1
SalBow3G1410 Salvia bowleyana HOM05D001461 ORTHO05D005534 2.3e-47 192.2 119 77.3
SEGI_29517 Sequoiadendron giganteum HOM05D001461 ORTHO05D005534 6.6e-47 190.7 116 75.0
Sed0026937 Sechium edule HOM05D001461 ORTHO05D005534 5.6e-46 187.6 119 79.0
EL10Ac1g00327 Beta vulgaris HOM05D001461 ORTHO05D005534 7.3e-46 187.2 118 71.2
AUR62004435 Chenopodium quinoa HOM05D001461 ORTHO05D005534 7.3e-46 187.2 118 71.2
AUR62023513 Chenopodium quinoa HOM05D001461 ORTHO05D005534 7.3e-46 187.2 118 71.2
Rhsim07G0008500 Rhododendron simsii HOM05D001461 ORTHO05D005534 1.2e-45 186.4 166 59.0
Lsat_1_v5_gn_5_108040 Lactuca sativa HOM05D001461 ORTHO05D005534 1.6e-45 186.0 114 78.1
FvH4_5g27350 Fragaria vesca HOM05D001461 ORTHO05D005534 2.8e-45 185.3 97 90.7
FAN28G0268 Fragaria x ananassa HOM05D001461 ORTHO05D005534 3.6e-45 184.9 97 89.7
Carub.0007s3383 Capsella rubella HOM05D001461 ORTHO05D005534 1.1e-44 183.3 118 75.4
Sc01g0010020 Simmondsia chinensis HOM05D001461 ORTHO05D005534 3.1e-44 181.8 119 70.6
BcaC04g22646 Brassica carinata HOM05D001461 ORTHO05D005534 4.0e-44 181.4 135 66.7
Lj4g0014781 Lotus japonicus HOM05D001461 ORTHO05D005534 6.8e-44 180.6 116 76.7
Sc01g0003060 Simmondsia chinensis HOM05D001461 ORTHO05D005534 6.8e-44 180.6 116 73.3
CSS0015159 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 1.2e-43 179.9 100 84.0
CSS0025412 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 1.2e-43 179.9 100 84.0
Nitab4.5_0000492g0140 Nicotiana tabacum HOM05D001461 ORTHO05D005534 3.4e-43 178.3 101 83.2
Glyma.15G246700 Glycine max HOM05D001461 ORTHO05D005534 1.2e-40 169.9 101 80.2
Lj4g0009029 Lotus japonicus HOM05D001461 ORTHO05D005534 1.6e-40 169.5 118 73.7
TPR.G32972 Trifolium pratense HOM05D001461 ORTHO05D005534 2.1e-40 169.1 96 82.3
Nitab4.5_0004629g0090 Nicotiana tabacum HOM05D001461 ORTHO05D005534 1.3e-39 166.4 120 70.0
Migut.E01261 Erythranthe guttata HOM05D001461 ORTHO05D005534 9.5e-38 160.2 99 76.8
SMO364G0470 Selaginella moellendorffii HOM05D001461 ORTHO05D005534 2.3e-36 155.6 113 62.8
Pp3c1_2350 Physcomitrium patens HOM05D001461 ORTHO05D005534 3.1e-36 155.2 110 61.8
AagrBONN_evm.TU.Sc2ySwM_344.4522 Anthoceros agrestis HOM05D001461 ORTHO05D005534 5.2e-36 154.5 112 61.6
HPP92_002836 Vanilla planifolia HOM05D001461 ORTHO05D005534 6.8e-36 154.1 100 69.0
Ah.07g196880 Amaranthus hybridus HOM05D001461 ORTHO05D005534 2.6e-35 152.1 101 71.3
MD08G1128900 Malus domestica HOM05D001461 ORTHO05D005534 7.6e-35 150.6 97 76.3
Hund27230 Selenicereus undatus HOM05D001461 ORTHO05D005534 8.4e-34 147.1 95 72.6
Mapoly0143s0026 Marchantia polymorpha HOM05D001461 ORTHO05D005534 7.8e-32 140.6 115 56.5
Zm00001eb376320 Zea mays HOM05D001461 ORTHO05D005534 1.2e-27 126.7 118 56.8
FAN13G0962 Fragaria x ananassa HOM05D001461 ORTHO05D005534 1.7e-26 122.9 64 90.6
MD08G1130100 Malus domestica HOM05D001461 ORTHO05D005534 1.2e-24 116.7 160 46.9
Oeu054373.3 Olea europaea HOM05D000540 ORTHO05D000681 1.2e-24 116.7 64 81.2
RcHm_v2.0_Chr5g0061641 Rosa chinensis HOM05D001461 ORTHO05D005534 1.2e-24 116.7 60 95.0
Lj9C594G4 Lonicera japonica HOM05D001461 ORTHO05D005534 7.8e-24 114.0 80 68.8
arahy.Tifrunner.gnm1.ann1.F4HMTZ Arachis hypogaea HOM05D001461 ORTHO05D005534 1.3e-23 113.2 60 88.3
vmacro13208 Vaccinium macrocarpon HOM05D001461 ORTHO05D005534 1.7e-23 112.8 63 81.0
Ciclev10022889m.g Citrus clementina HOM05D001461 ORTHO05D005534 3.0e-23 112.1 64 82.8
QL02p032078 Quercus lobata HOM05D001461 ORTHO05D005534 5.1e-23 111.3 54 96.3
arahy.Tifrunner.gnm1.ann1.NAT0LD Arachis hypogaea HOM05D001461 ORTHO05D005534 3.3e-22 108.6 58 86.2
Zm00001eb376250 Zea mays HOM05D001461 ORTHO05D005534 3.3e-22 108.6 61 85.2
Glyma.05G213500 Glycine max HOM05D001461 ORTHO05D005534 9.6e-22 107.1 68 77.9
Glyma.06G264500 Glycine max HOM05D001461 ORTHO05D005534 2.8e-21 105.5 61 78.7
Cfa012281 Carpinus fangiana HOM05D001461 ORTHO05D005534 3.6e-21 105.1 53 90.6
MD14G1117200 Malus domestica HOM05D001461 ORTHO05D005534 1.8e-20 102.8 53 86.8
arahy.Tifrunner.gnm1.ann1.2LVS12 Arachis hypogaea HOM05D001461 ORTHO05D005534 4.0e-20 101.7 53 86.8
Oeu063667.1 Olea europaea HOM05D001461 ORTHO05D005534 6.9e-20 100.9 82 57.3
MCO07G452 Micromonas commoda HOM05D001461 ORTHO05D005534 4.5e-19 98.2 130 43.8
Actinidia28489 Actinidia chinensis HOM05D001461 ORTHO05D005534 9.9e-19 97.1 51 84.3
PRCOL_00003773 Prasinoderma coloniale HOM05D001461 ORTHO05D005534 1.4e-17 93.2 137 39.4
Solyc07g061860.3 Solanum lycopersicum HOM05D001461 ORTHO05D051078 8.1e-13 77.4 72 55.6
Glyma.08G020100 Glycine max HOM05D001461 ORTHO05D005534 1.8e-12 76.3 52 75.0
MD08G1129600 Malus domestica HOM05D001461 ORTHO05D005534 1.7e-10 69.7 100 49.0
Sopen07g030150 Solanum pennellii HOM05D018748 ORTHO05D009630 5.5e-09 64.7 35 85.7
AagrBONN_evm.TU.Sc2ySwM_344.2905 Anthoceros agrestis HOM05D000001 ORTHO05D005534 3.5e-08 62.0 94 36.2
Atru.chr9.2072 Acer truncatum HOM05D001461 ORTHO05D005534 5.1e-07 58.2 116 35.3


User provided reference genes

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