Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0304491 Rosa chinensis HOM05D006098 ORTHO05D007470 7.1e-251 870.2 449 100.0
FAN20G1855 Fragaria x ananassa HOM05D006098 ORTHO05D007470 2.7e-226 788.5 449 91.5
FvH4_2g37220 Fragaria vesca HOM05D006098 ORTHO05D007470 2.5e-224 781.9 449 91.3
FAN27G2650 Fragaria x ananassa HOM05D006098 ORTHO05D007470 4.8e-223 777.7 448 90.6
FAN15G0890 Fragaria x ananassa HOM05D006098 ORTHO05D007470 4.5e-221 771.2 450 90.2
Atru.chr8.2640 Acer truncatum HOM05D006098 ORTHO05D007470 1.2e-168 597.0 479 68.5
Duzib205G1615 Durio zibethinus HOM05D006098 ORTHO05D007470 4.4e-168 595.1 380 80.0
COL.COLO4_10360 Corchorus olitorius HOM05D006098 ORTHO05D007470 1.7e-167 593.2 427 73.3
Thecc.03G318000 Theobroma cacao HOM05D006098 ORTHO05D007470 7.0e-166 587.8 381 78.7
Dinv41811 Davidia involucrata HOM05D006098 ORTHO05D007470 1.2e-165 587.0 423 73.8
Manes.15G184300 Manihot esculenta HOM05D006098 ORTHO05D007470 1.0e-164 583.9 451 69.2
Cpa.g.sc71.63 Carica papaya HOM05D006098 ORTHO05D007470 1.9e-163 579.7 442 70.8
Gorai.008G220000 Gossypium raimondii HOM05D006098 ORTHO05D007470 4.3e-163 578.6 424 72.4
Nn1g09368 Nelumbo nucifera HOM05D006098 ORTHO05D007470 5.6e-163 578.2 446 69.1
CSS0030969 Camellia sinensis var. sinensis HOM05D006098 ORTHO05D007470 3.4e-160 568.9 449 67.7
Gorai.004G178500 Gossypium raimondii HOM05D006098 ORTHO05D007470 3.4e-160 568.9 422 71.1
Gohir.A08G150000 Gossypium hirsutum HOM05D006098 ORTHO05D007470 4.4e-160 568.5 422 70.9
DCAR_028369 Daucus carota HOM05D006098 ORTHO05D007470 1.3e-159 567.0 379 76.0
Potri.003G033300 Populus trichocarpa HOM05D006098 ORTHO05D007470 1.7e-159 566.6 391 74.4
PGR031G3371 Punica granatum HOM05D006098 ORTHO05D007470 5.4e-158 561.6 462 67.7
Actinidia14735 Actinidia chinensis HOM05D006098 ORTHO05D007470 9.2e-158 560.8 457 67.8
Peaxi162Scf00045g00071 Petunia axillaris HOM05D006098 ORTHO05D007470 1.6e-157 560.1 418 69.9
Rhsim11G0034900 Rhododendron simsii HOM05D006098 ORTHO05D007470 3.5e-157 558.9 432 69.7
Sabra01G0135500 Salix brachista HOM05D006098 ORTHO05D007470 6.0e-157 558.1 386 75.4
Nn7g37397 Nelumbo nucifera HOM05D006098 ORTHO05D007470 1.0e-156 557.4 442 68.8
GSVIVG01036872001 Vitis vinifera HOM05D006098 ORTHO05D007470 1.3e-156 557.0 421 71.7
Actinidia01257 Actinidia chinensis HOM05D006098 ORTHO05D007470 2.3e-156 556.2 419 71.1
Potri.001G193400 Populus trichocarpa HOM05D006098 ORTHO05D007470 2.3e-156 556.2 406 72.7
Cc08_g05440 Coffea canephora HOM05D006098 ORTHO05D007470 1.9e-155 553.1 446 65.9
TAR629G3250 Trochodendron aralioides HOM05D006098 ORTHO05D007470 5.6e-155 551.6 423 70.4
vmacro00080 Vaccinium macrocarpon HOM05D006098 ORTHO05D007470 5.6e-155 551.6 444 68.5
PGSC0003DMG400018483 Solanum tuberosum HOM05D006098 ORTHO05D007470 7.3e-155 551.2 383 73.9
Peaxi162Scf00053g00062 Petunia axillaris HOM05D006098 ORTHO05D007470 2.8e-154 549.3 424 69.1
Nitab4.5_0011712g0010 Nicotiana tabacum HOM05D006098 ORTHO05D007470 3.6e-154 548.9 419 69.2
Solyc08g075520.4 Solanum lycopersicum HOM05D006098 ORTHO05D007470 3.6e-154 548.9 418 69.1
SalBow4G1396 Salvia bowleyana HOM05D006098 ORTHO05D007470 4.7e-154 548.5 407 69.5
Oeu057164.1 Olea europaea HOM05D006098 ORTHO05D007470 6.2e-154 548.1 422 68.2
Sopen08g001580 Solanum pennellii HOM05D006098 ORTHO05D007470 1.1e-153 547.4 448 65.8
Oeu042192.1 Olea europaea HOM05D006098 ORTHO05D007470 1.4e-153 547.0 407 69.8
Lsat_1_v5_gn_3_19721 Lactuca sativa HOM05D006098 ORTHO05D007470 3.1e-153 545.8 445 66.7
Oeu042191.1 Olea europaea HOM05D006098 ORTHO05D007470 3.1e-153 545.8 407 69.5
Duzib068G0239 Durio zibethinus HOM05D006098 ORTHO05D007470 4.0e-153 545.4 383 73.9
CAN.G1026.8 Capsicum annuum HOM05D006098 ORTHO05D007470 8.9e-153 544.3 418 68.7
Actinidia18166 Actinidia chinensis HOM05D006098 ORTHO05D007470 3.4e-152 542.3 392 73.0
Lj8A337G13 Lonicera japonica HOM05D006098 ORTHO05D007470 4.4e-152 542.0 362 77.3
Solyc08g005560.3 Solanum lycopersicum HOM05D006098 ORTHO05D007470 4.4e-152 542.0 452 65.3
MSTRG.1762 Avicennia marina HOM05D006098 ORTHO05D007470 9.9e-152 540.8 385 71.9
ECA246G0847 Erigeron canadensis HOM05D006098 ORTHO05D007470 9.9e-152 540.8 374 75.4
Nitab4.5_0001175g0140 Nicotiana tabacum HOM05D006098 ORTHO05D007470 9.9e-152 540.8 403 70.7
CAN.G884.14 Capsicum annuum HOM05D006098 ORTHO05D007470 1.3e-151 540.4 382 72.8
Nitab4.5_0000985g0060 Nicotiana tabacum HOM05D006098 ORTHO05D007470 2.2e-151 539.7 458 63.8
AUR62010477 Chenopodium quinoa HOM05D006098 ORTHO05D007470 2.9e-151 539.3 386 72.8
CAN.G884.9 Capsicum annuum HOM05D006098 ORTHO05D007470 1.4e-150 537.0 382 72.8
Nitab4.5_0000898g0120 Nicotiana tabacum HOM05D006098 ORTHO05D007470 1.4e-150 537.0 415 67.7
Ah.12g058500 Amaranthus hybridus HOM05D006098 ORTHO05D007470 4.2e-150 535.4 389 72.0
EL10Ac5g12579 Beta vulgaris HOM05D006098 ORTHO05D007470 4.2e-150 535.4 410 69.0
THA.LOC104811082 Tarenaya hassleriana HOM05D006098 ORTHO05D007470 4.2e-150 535.4 423 68.1
Migut.A00537 Erythranthe guttata HOM05D006098 ORTHO05D007470 3.5e-149 532.3 382 72.0
HanXRQChr13g0411151 Helianthus annuus HOM05D006098 ORTHO05D007470 7.8e-149 531.2 381 73.8
MBI15_g33454_MAGBIO Magnolia biondii HOM05D006098 ORTHO05D007470 1.0e-148 530.8 372 73.9
ECA240G1264 Erigeron canadensis HOM05D006098 ORTHO05D007470 5.1e-148 528.5 413 69.2
Nitab4.5_0000030g0370 Nicotiana tabacum HOM05D006098 ORTHO05D007470 6.6e-148 528.1 371 73.9
Rhsim11G0035500 Rhododendron simsii HOM05D006098 ORTHO05D007470 6.6e-148 528.1 488 61.5
HanXRQChr17g0537231 Helianthus annuus HOM05D006098 ORTHO05D007470 2.1e-146 523.1 390 71.8
HanXRQChr03g0081041 Helianthus annuus HOM05D006098 ORTHO05D007470 2.8e-146 522.7 411 69.6
Oeu046790.1 Olea europaea HOM05D006098 ORTHO05D007470 6.2e-146 521.5 393 68.7
AUR62030416 Chenopodium quinoa HOM05D006098 ORTHO05D007470 8.1e-146 521.2 421 66.7
SGA_v2.0_scaffold111G31352 Striga asiatica HOM05D006098 ORTHO05D007470 3.1e-145 519.2 420 65.7
ATR0568G039 Amborella trichopoda HOM05D006098 ORTHO05D007470 6.9e-145 518.1 420 67.4
Gohir.D12G205100 Gossypium hirsutum HOM05D006098 ORTHO05D007470 9.0e-145 517.7 333 79.6
Dinv37422 Davidia involucrata HOM05D006098 ORTHO05D007470 7.6e-144 514.6 408 68.4
Sabra03G0019100 Salix brachista HOM05D006098 ORTHO05D007470 1.3e-143 513.8 482 59.3
Lsat_1_v5_gn_5_57121 Lactuca sativa HOM05D006098 ORTHO05D007470 4.9e-143 511.9 428 67.3
Gohir.A12G202400 Gossypium hirsutum HOM05D006098 ORTHO05D007470 8.4e-143 511.1 333 78.7
Actinidia32783 Actinidia chinensis HOM05D006098 ORTHO05D007470 5.4e-142 508.4 447 63.1
PSO675G7908 Papaver somniferum HOM05D006098 ORTHO05D007470 5.4e-142 508.4 415 66.3
PSO541G2197 Papaver somniferum HOM05D006098 ORTHO05D007470 1.2e-141 507.3 415 66.5
SalBow8G2199 Salvia bowleyana HOM05D006098 ORTHO05D007470 2.3e-132 476.5 427 61.1
Aa31LG6G1850 Aethionema arabicum HOM05D006098 ORTHO05D007470 2.5e-131 473.0 412 61.4
AT4G19160 Arabidopsis thaliana HOM05D006098 ORTHO05D007470 4.8e-130 468.8 372 65.3
AL7G34930 Arabidopsis lyrata HOM05D006098 ORTHO05D007470 5.3e-129 465.3 426 59.4
Carub.0007s2199 Capsella rubella HOM05D006098 ORTHO05D007470 3.4e-128 462.6 426 58.9
unitig_37.g12121 Utricularia gibba HOM05D006098 ORTHO05D007470 1.3e-127 460.7 408 61.3
CDE01G0744 Ceratophyllum demersum HOM05D006098 ORTHO05D007470 4.9e-127 458.8 422 59.7
SEGI_14227 Sequoiadendron giganteum HOM05D006098 ORTHO05D007470 1.4e-126 457.2 375 63.2
Peaxi162Scf00876g00435 Petunia axillaris HOM05D006098 ORTHO05D007470 3.1e-121 439.5 373 63.3
Manes.17G016300 Manihot esculenta HOM05D006098 ORTHO05D007470 4.2e-118 429.1 368 63.0
CARHR226030 Cardamine hirsuta HOM05D006098 ORTHO05D007470 2.7e-117 426.4 455 54.3
Sp7g17860 Schrenkiella parvula HOM05D006098 ORTHO05D007470 4.6e-117 425.6 398 60.1
BcaNung04007 Brassica carinata HOM05D006098 ORTHO05D007470 1.1e-115 421.0 385 61.8
FAN27G0800 Fragaria x ananassa HOM05D006098 ORTHO05D007470 1.9e-115 420.2 285 80.4
Sopen08g024170 Solanum pennellii HOM05D006098 ORTHO05D007470 8.2e-114 414.8 338 64.5
BcaC09g51434 Brassica carinata HOM05D006098 ORTHO05D007470 1.1e-113 414.5 390 60.3
BraA01t01058Z Brassica rapa HOM05D006098 ORTHO05D007470 1.8e-113 413.7 401 60.1
PGSC0003DMG400016110 Solanum tuberosum HOM05D006098 ORTHO05D007470 3.1e-113 412.9 338 64.5
C01p13160 Brassica napus HOM05D006098 ORTHO05D007470 9.0e-113 411.4 391 60.1
BolC1t01289H Brassica oleracea HOM05D006098 ORTHO05D007470 9.0e-113 411.4 391 60.1
Thhalv10025127m.g Eutrema salsugineum HOM05D006098 ORTHO05D007470 9.0e-113 411.4 397 59.2
A01p11120 Brassica napus HOM05D006098 ORTHO05D007470 1.9e-110 403.7 414 57.2
BcaB04g18531 Brassica carinata HOM05D006098 ORTHO05D007470 2.9e-103 379.8 448 51.1
A08p14200 Brassica napus HOM05D006098 ORTHO05D007470 6.5e-103 378.6 384 56.8
BraA08t33414Z Brassica rapa HOM05D006098 ORTHO05D007470 6.5e-103 378.6 384 56.8
BcaC01g00601 Brassica carinata HOM05D006098 ORTHO05D007470 2.1e-101 373.6 394 55.3
C03p81800 Brassica napus HOM05D006098 ORTHO05D007470 6.7e-100 368.6 389 55.5
BolC3t20457H Brassica oleracea HOM05D006098 ORTHO05D007470 6.7e-100 368.6 389 55.5
CAN.G947.35 Capsicum annuum HOM05D006098 ORTHO05D007470 4.2e-94 349.4 354 57.1
Gohir.D08G171101 Gossypium hirsutum HOM05D006098 ORTHO05D007470 3.6e-93 346.3 234 75.6
MSTRG.13909 Avicennia marina HOM05D006098 ORTHO05D007470 1.5e-78 297.7 217 69.1
AagrBONN_evm.TU.Sc2ySwM_368.631 Anthoceros agrestis HOM05D006098 ORTHO05D007470 5.5e-70 269.2 382 40.8
FvH4_2g37180 Fragaria vesca HOM05D006098 ORTHO05D007470 9.5e-70 268.5 139 97.8
HanXRQChr05g0158621 Helianthus annuus HOM05D006098 ORTHO05D007470 5.2e-60 236.1 159 78.0
Pp3c12_14620 Physcomitrium patens HOM05D006098 ORTHO05D007470 4.3e-54 216.5 406 35.7
SMO364G0549 Selaginella moellendorffii HOM05D006098 ORTHO05D007470 2.1e-53 214.2 394 36.5
Hund11040 Selenicereus undatus HOM05D006098 ORTHO05D007470 5.2e-44 183.0 375 37.1
HanXRQChr09g0271561 Helianthus annuus HOM05D006098 ORTHO05D007470 1.2e-43 181.8 152 63.8
HanXRQChr11g0344761 Helianthus annuus HOM05D006098 ORTHO05D007470 3.7e-42 176.8 125 72.8
Eucgr.D02551 Eucalyptus grandis HOM05D006098 ORTHO05D007470 7.1e-41 172.6 110 77.3
Oeu015533.1 Olea europaea HOM05D006098 ORTHO05D007470 3.9e-39 166.8 154 57.1
Rhsim11G0035700 Rhododendron simsii HOM05D006098 ORTHO05D007470 6.6e-39 166.0 415 35.2
RcHm_v2.0_Chr4g0402301 Rosa chinensis HOM05D006098 ORTHO05D007470 4.7e-37 159.8 126 69.8
Oeu042198.1 Olea europaea HOM05D006098 ORTHO05D007470 1.2e-35 155.2 236 43.2
Eucgr.D02550 Eucalyptus grandis HOM05D006098 ORTHO05D007470 1.1e-33 148.7 124 62.1
Pp3c4_2130 Physcomitrium patens HOM05D006098 ORTHO05D007470 2.4e-28 131.0 313 32.9
Peaxi162Scf00527g00718 Petunia axillaris HOM05D006098 ORTHO05D007470 5.3e-28 129.8 196 40.8
Prupe.1G352900 Prunus persica HOM05D006098 ORTHO05D007470 4.2e-25 120.2 81 77.8
HanXRQChr11g0344831 Helianthus annuus HOM05D006098 ORTHO05D007470 8.7e-23 112.5 78 71.8
Aa31sc19G30 Aethionema arabicum HOM05D006098 ORTHO05D007470 4.0e-12 77.0 210 31.4
Cre14.g621850 Chlamydomonas reinhardtii HOM05D006098 ORTHO05D007470 1.3e-10 72.0 233 27.9
Aa31LG3G3710 Aethionema arabicum HOM05D006098 ORTHO05D007470 9.3e-09 65.9 61 57.4
GSVIVG01013487001 Vitis vinifera HOM05D007414 ORTHO05D009482 1.2e-08 65.5 414 23.9
AagrBONN_evm.TU.Sc2ySwM_362.1466 Anthoceros agrestis HOM05D007414 ORTHO05D009482 4.6e-08 63.5 420 24.3
COL.COLO4_20658 Corchorus olitorius HOM05D007414 ORTHO05D009482 6.0e-08 63.2 280 25.0
Sc11g0006450 Simmondsia chinensis HOM05D007414 ORTHO05D009482 1.0e-07 62.4 408 23.8
Dinv22037 Davidia involucrata HOM05D007414 ORTHO05D009482 1.3e-07 62.0 273 25.6
Thecc.10G154500 Theobroma cacao HOM05D007414 ORTHO05D009482 1.3e-07 62.0 280 25.4
Ah.12g062800 Amaranthus hybridus HOM05D007414 ORTHO05D009482 1.8e-07 61.6 281 24.9
Cc02_g30210 Coffea canephora HOM05D007414 ORTHO05D009482 1.8e-07 61.6 276 26.1
Mapoly0007s0139 Marchantia polymorpha HOM05D007414 ORTHO05D009482 2.3e-07 61.2 418 24.6
AUR62032647 Chenopodium quinoa HOM05D007414 ORTHO05D009482 6.7e-07 59.7 269 23.8
Manes.11G006000 Manihot esculenta HOM05D007414 ORTHO05D009482 6.7e-07 59.7 294 23.5
arahy.Tifrunner.gnm1.ann1.XZAR1L Arachis hypogaea HOM05D007414 ORTHO05D009482 1.1e-06 58.9 431 22.5
AUR62026859 Chenopodium quinoa HOM05D007414 ORTHO05D009482 1.1e-06 58.9 269 23.4
CsaV3_5G024500 Cucumis sativus L. HOM05D007414 ORTHO05D009482 1.1e-06 58.9 396 23.5
Duzib114G0511 Durio zibethinus HOM05D007414 ORTHO05D009482 1.1e-06 58.9 286 24.1
Nitab4.5_0004955g0030 Nicotiana tabacum HOM05D007414 ORTHO05D009482 1.5e-06 58.5 277 24.2
PGSC0003DMG400018334 Solanum tuberosum HOM05D007414 ORTHO05D009482 1.5e-06 58.5 267 24.7
Atru.chr12.1333 Acer truncatum HOM05D007414 ORTHO05D009482 3.3e-06 57.4 476 23.3
QL04p017831 Quercus lobata HOM05D007414 ORTHO05D009482 3.3e-06 57.4 285 24.6
Pp3c11_910 Physcomitrium patens HOM05D007414 ORTHO05D009482 4.3e-06 57.0 400 22.8
ClCG01G007530 Citrullus lanatus HOM05D007414 ORTHO05D009482 7.4e-06 56.2 384 23.7
Gorai.010G216100 Gossypium raimondii HOM05D007414 ORTHO05D009482 7.4e-06 56.2 279 23.3
Solyc01g096400.4 Solanum lycopersicum HOM05D007414 ORTHO05D009482 7.4e-06 56.2 267 23.6
TWI15G0498 Tripterygium wilfordii HOM05D007414 ORTHO05D009482 7.4e-06 56.2 435 23.9
Gohir.A10G185400 Gossypium hirsutum HOM05D007414 ORTHO05D009482 9.6e-06 55.8 278 24.1
Potri.001G027600 Populus trichocarpa HOM05D007414 ORTHO05D009482 9.6e-06 55.8 285 23.5
Sopen01g040130 Solanum pennellii HOM05D007414 ORTHO05D009482 9.6e-06 55.8 267 23.6


User provided reference genes

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