Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0304381 Rosa chinensis HOM05D006313 ORTHO05D007853 0.0e+00 1663.3 801 100.0
FAN15G3120 Fragaria x ananassa HOM05D006313 ORTHO05D007853 0.0e+00 1598.9 800 95.2
FAN20G0447 Fragaria x ananassa HOM05D006313 ORTHO05D007853 0.0e+00 1571.2 835 91.1
FAN27G1942 Fragaria x ananassa HOM05D006313 ORTHO05D007853 0.0e+00 1524.6 830 89.5
Prupe.1G353800 Prunus persica HOM05D006313 ORTHO05D007853 0.0e+00 1452.2 801 87.4
MD08G1002100 Malus domestica HOM05D006313 ORTHO05D007853 0.0e+00 1442.2 801 86.1
CiPaw.07G138200 Carya illinoinensis HOM05D006313 ORTHO05D007853 0.0e+00 1337.8 801 79.2
QL02p014292 Quercus lobata HOM05D006313 ORTHO05D007853 0.0e+00 1317.0 800 77.9
Dinv31948 Davidia involucrata HOM05D006313 ORTHO05D007853 0.0e+00 1312.0 802 77.8
CANSAT25G3184 Cannabis sativa HOM05D006313 ORTHO05D007853 0.0e+00 1295.4 810 76.2
GSVIVG01013365001 Vitis vinifera HOM05D006313 ORTHO05D007853 0.0e+00 1293.5 802 76.6
Atru.chr13.141 Acer truncatum HOM05D006313 ORTHO05D007853 0.0e+00 1289.6 805 75.9
Potri.005G251300 Populus trichocarpa HOM05D006313 ORTHO05D007853 0.0e+00 1279.6 802 76.3
Manes.18G004800 Manihot esculenta HOM05D006313 ORTHO05D007853 0.0e+00 1278.8 802 74.9
Hma1.2p1_0507F.1_g168580 Hydrangea macrophylla HOM05D006313 ORTHO05D007853 0.0e+00 1276.5 818 74.2
Potri.002G010100 Populus trichocarpa HOM05D006313 ORTHO05D007853 0.0e+00 1276.2 802 74.9
TWI12G0830 Tripterygium wilfordii HOM05D006313 ORTHO05D007853 0.0e+00 1274.6 802 75.3
Sabra02G0007500 Salix brachista HOM05D006313 ORTHO05D007853 0.0e+00 1272.3 802 74.8
Sabra05G0194600 Salix brachista HOM05D006313 ORTHO05D007853 0.0e+00 1269.2 801 74.8
Cfa014086 Carpinus fangiana HOM05D006313 ORTHO05D007853 0.0e+00 1264.2 801 76.0
Ciclev10003249m.g Citrus clementina HOM05D006313 ORTHO05D007853 0.0e+00 1259.6 815 74.4
TAR381G0755 Trochodendron aralioides HOM05D006313 ORTHO05D007853 0.0e+00 1258.8 802 74.6
Rhsim07G0255100 Rhododendron simsii HOM05D006313 ORTHO05D007853 0.0e+00 1248.4 801 73.7
Thecc.08G059800 Theobroma cacao HOM05D006313 ORTHO05D007853 0.0e+00 1247.3 802 73.8
PGR083G2847 Punica granatum HOM05D006313 ORTHO05D007853 0.0e+00 1240.3 804 73.1
Haze_22787 Corylus avellana HOM05D006313 ORTHO05D007853 0.0e+00 1239.9 883 69.5
Gorai.009G187700 Gossypium raimondii HOM05D006313 ORTHO05D007853 0.0e+00 1239.9 802 74.1
MELO3C017021.2 Cucumis melo HOM05D006313 ORTHO05D007853 0.0e+00 1237.6 801 72.8
Gohir.A05G179200 Gossypium hirsutum HOM05D006313 ORTHO05D007853 0.0e+00 1237.6 802 73.8
Gohir.D05G182400 Gossypium hirsutum HOM05D006313 ORTHO05D007853 0.0e+00 1235.3 802 73.6
CsaV3_4G037230 Cucumis sativus L. HOM05D006313 ORTHO05D007853 0.0e+00 1233.4 801 72.4
vmacro04407 Vaccinium macrocarpon HOM05D006313 ORTHO05D007853 0.0e+00 1233.0 837 70.5
CSS0043965 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 0.0e+00 1214.5 802 72.4
Duzib093G1521 Durio zibethinus HOM05D006313 ORTHO05D007853 0.0e+00 1214.5 802 72.9
Oeu000694.1 Olea europaea HOM05D006313 ORTHO05D007853 0.0e+00 1213.4 802 71.2
Aqoxy5G01036 Aquilegia oxysepala HOM05D006313 ORTHO05D007853 0.0e+00 1201.8 802 69.8
Migut.N02954 Erythranthe guttata HOM05D006313 ORTHO05D007853 0.0e+00 1194.5 802 71.7
Cc10_g00630 Coffea canephora HOM05D006313 ORTHO05D007853 0.0e+00 1191.0 802 70.0
Lsat_1_v5_gn_9_45201 Lactuca sativa HOM05D006313 ORTHO05D007853 0.0e+00 1191.0 805 70.4
FvH4_2g37320 Fragaria vesca HOM05D006313 ORTHO05D007853 0.0e+00 1187.9 608 94.7
Nn5g30955 Nelumbo nucifera HOM05D006313 ORTHO05D007853 0.0e+00 1187.2 771 73.3
EL10Ac1g01951 Beta vulgaris HOM05D006313 ORTHO05D007853 0.0e+00 1182.2 812 68.6
Eucgr.F01772 Eucalyptus grandis HOM05D006313 ORTHO05D007853 0.0e+00 1181.4 802 71.1
PGSC0003DMG400009982 Solanum tuberosum HOM05D006313 ORTHO05D007853 0.0e+00 1175.6 803 69.9
CAN.G311.119 Capsicum annuum HOM05D006313 ORTHO05D007853 0.0e+00 1171.4 803 69.0
Sopen04g036010 Solanum pennellii HOM05D006313 ORTHO05D007853 0.0e+00 1170.6 803 69.6
Actinidia37918 Actinidia chinensis HOM05D006313 ORTHO05D007853 0.0e+00 1167.9 753 74.0
VMungo0647G1480 Vigna mungo HOM05D006313 ORTHO05D007853 0.0e+00 1167.9 804 70.0
ECA232G0012 Erigeron canadensis HOM05D006313 ORTHO05D007853 0.0e+00 1164.8 805 69.4
HanXRQChr15g0492461 Helianthus annuus HOM05D006313 ORTHO05D007853 0.0e+00 1162.9 807 69.6
Nitab4.5_0000588g0050 Nicotiana tabacum HOM05D006313 ORTHO05D007853 0.0e+00 1162.9 852 66.3
Medtr5g066730 Medicago truncatula HOM05D006313 ORTHO05D007853 0.0e+00 1161.7 801 69.2
Glyma.14G223400 Glycine max HOM05D006313 ORTHO05D007853 0.0e+00 1161.0 806 70.1
Peaxi162Scf00711g00530 Petunia axillaris HOM05D006313 ORTHO05D007853 0.0e+00 1161.0 803 69.4
Hund05111 Selenicereus undatus HOM05D006313 ORTHO05D007853 0.0e+00 1161.0 844 65.2
MBI08_g24269_MAGBIO Magnolia biondii HOM05D006313 ORTHO05D007853 0.0e+00 1158.3 802 68.8
DCAR_013918 Daucus carota HOM05D006313 ORTHO05D007853 0.0e+00 1156.0 836 66.1
Thhalv10016264m.g Eutrema salsugineum HOM05D006313 ORTHO05D007853 0.0e+00 1154.0 804 68.3
THA.LOC104825426 Tarenaya hassleriana HOM05D006313 ORTHO05D007853 0.0e+00 1154.0 802 68.1
AT2G30600 Arabidopsis thaliana HOM05D006313 ORTHO05D007853 0.0e+00 1153.7 805 67.6
Phvul.001G001100 Phaseolus vulgaris HOM05D006313 ORTHO05D007853 0.0e+00 1153.7 804 69.0
Aa31LG5G6170 Aethionema arabicum HOM05D006313 ORTHO05D007853 0.0e+00 1152.5 804 67.9
PSO170G0983 Papaver somniferum HOM05D006313 ORTHO05D007853 0.0e+00 1151.0 803 67.7
Lj5g0009044 Lotus japonicus HOM05D006313 ORTHO05D007853 0.0e+00 1149.8 805 69.2
PSO210G6994 Papaver somniferum HOM05D006313 ORTHO05D007853 0.0e+00 1149.4 803 67.5
Sp4g13150 Schrenkiella parvula HOM05D006313 ORTHO05D007853 0.0e+00 1141.3 805 67.1
AL4G25490 Arabidopsis lyrata HOM05D006313 ORTHO05D007853 0.0e+00 1140.6 805 67.3
arahy.Tifrunner.gnm1.ann1.N9IWSS Arachis hypogaea HOM05D006313 ORTHO05D007853 0.0e+00 1135.2 808 68.8
arahy.Tifrunner.gnm1.ann1.TM2XQH Arachis hypogaea HOM05D006313 ORTHO05D007853 0.0e+00 1135.2 808 68.8
SGA_v2.0_scaffold54G19673 Striga asiatica HOM05D006313 ORTHO05D007853 0.0e+00 1132.1 809 67.1
C04p59650 Brassica napus HOM05D006313 ORTHO05D007853 0.0e+00 1131.7 803 67.5
A04p23350 Brassica napus HOM05D006313 ORTHO05D007853 0.0e+00 1131.3 801 67.5
AUR62040798 Chenopodium quinoa HOM05D006313 ORTHO05D007853 0.0e+00 1130.2 801 67.2
Ca_25243_v3 Cicer arietinum L. HOM05D006313 ORTHO05D007853 0.0e+00 1129.0 801 68.4
Carub.0004s1176 Capsella rubella HOM05D006313 ORTHO05D007853 0.0e+00 1120.1 805 66.0
Lalb_Chr01g0008341 Lupinus albus HOM05D006313 ORTHO05D007853 0.0e+00 1119.8 804 67.8
BraA04t17863Z Brassica rapa HOM05D006313 ORTHO05D007853 0.0e+00 1110.5 844 64.1
BolC4t27473H Brassica oleracea HOM05D006313 ORTHO05D007853 0.0e+00 1107.8 854 63.5
CARHR124070 Cardamine hirsuta HOM05D006313 ORTHO05D007853 0.0e+00 1094.0 787 65.9
Lj4A10G75 Lonicera japonica HOM05D006313 ORTHO05D007853 0.0e+00 1087.0 806 67.5
SHI07994 Sapria himalayana HOM05D006313 ORTHO05D007853 2.4e-310 1068.5 800 65.5
Sed0015221 Sechium edule HOM05D006313 ORTHO05D007853 7.8e-309 1063.5 714 72.3
BcaB06g28382 Brassica carinata HOM05D006313 ORTHO05D007853 3.6e-306 1054.7 803 64.5
CDE04G1532 Ceratophyllum demersum HOM05D006313 ORTHO05D007853 1.5e-304 1049.3 805 61.7
HPP92_022696 Vanilla planifolia HOM05D006313 ORTHO05D007853 8.1e-298 1026.9 803 62.3
ATR0661G251 Amborella trichopoda HOM05D006313 ORTHO05D007853 2.6e-296 1021.9 804 60.3
Cpa.g.sc26.189 Carica papaya HOM05D006313 ORTHO05D007853 7.6e-296 1020.4 704 70.9
Psat2g064920 Pisum sativum HOM05D006313 ORTHO05D007853 4.6e-293 1011.1 734 67.4
Hma1.2p1_0507F.1_g168570 Hydrangea macrophylla HOM05D006313 ORTHO05D007853 1.3e-263 913.3 598 72.9
COL.COLO4_05223 Corchorus olitorius HOM05D006313 ORTHO05D007853 9.4e-262 907.1 608 72.7
CDE02G1829 Ceratophyllum demersum HOM05D006313 ORTHO05D007853 3.3e-251 872.1 803 54.2
unitig_22.g5883 Utricularia gibba HOM05D006313 ORTHO05D007853 1.4e-233 813.5 616 63.0
TPR.G38702 Trifolium pratense HOM05D006313 ORTHO05D007853 6.8e-228 794.7 610 65.1
AagrBONN_evm.TU.Sc2ySwM_228.121 Anthoceros agrestis HOM05D006313 ORTHO05D007853 5.6e-222 775.0 824 48.1
Pp3c3_5520 Physcomitrium patens HOM05D006313 ORTHO05D007853 9.2e-209 731.1 827 47.6
SMO361G0777 Selaginella moellendorffii HOM05D006313 ORTHO05D007853 2.3e-204 716.5 826 45.3
Solyc04g082420.3 Solanum lycopersicum HOM05D006313 ORTHO05D007853 3.4e-179 632.9 450 67.6
AUR62036859 Chenopodium quinoa HOM05D006313 ORTHO05D007853 1.7e-178 630.6 531 59.3
Sc02g0009120 Simmondsia chinensis HOM05D006313 ORTHO05D007853 3.5e-176 622.9 453 66.9
Mapoly0001s0491 Marchantia polymorpha HOM05D006313 ORTHO05D007853 8.5e-154 548.5 582 47.4
Manes.18G005201 Manihot esculenta HOM05D006313 ORTHO05D007853 2.6e-147 526.9 372 67.7
Os05g0345500 Oryza sativa ssp. japonica HOM05D006313 ORTHO05D007853 2.0e-142 510.8 453 54.5
CSS0049724 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 1.0e-138 498.4 414 63.3
Zm00001eb379580 Zea mays HOM05D006313 ORTHO05D007853 1.0e-135 488.4 446 53.8
SEGI_26691 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 8.8e-135 485.3 488 51.2
Sc02g0009110 Simmondsia chinensis HOM05D006313 ORTHO05D007853 2.2e-133 480.7 315 70.2
Cfa012651 Carpinus fangiana HOM05D006313 ORTHO05D007853 5.7e-118 429.5 340 66.2
TPR.G21513 Trifolium pratense HOM05D006313 ORTHO05D007853 2.6e-94 350.9 193 78.8
CSS0044355 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 3.3e-89 334.0 306 59.5
SEGI_09974 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 1.0e-82 312.4 263 58.6
Sabra05G0194400 Salix brachista HOM05D006313 ORTHO05D007853 5.1e-82 310.1 236 65.3
ClCG11G018700 Citrullus lanatus HOM05D006313 ORTHO05D007853 4.6e-75 287.0 146 84.2
Sabra05G0194300 Salix brachista HOM05D006313 ORTHO05D007853 5.2e-71 273.5 149 81.2
CBR_g18852 Chara braunii HOM05D006313 ORTHO05D007853 3.4e-70 270.8 513 36.1
Cpa.g.sc801.5 Carica papaya HOM05D006313 ORTHO05D007853 7.9e-59 233.0 123 77.2
Cre03.g158850 Chlamydomonas reinhardtii HOM05D006313 ORTHO05D007853 7.6e-54 216.5 182 51.6
CBR_g6381 Chara braunii HOM05D006313 ORTHO05D007853 1.5e-49 202.2 147 59.9
PRCOL_00004404 Prasinoderma coloniale HOM05D006313 ORTHO05D007853 7.4e-49 199.9 863 24.9
SEGI_14381 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 2.2e-45 188.3 213 49.3
SEGI_13417 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 1.8e-39 168.7 93 76.3
unitig_22.g5882 Utricularia gibba HOM05D006313 ORTHO05D007853 5.9e-30 137.1 82 70.7
COL.COLO4_05222 Corchorus olitorius HOM05D006313 ORTHO05D007853 5.7e-25 120.6 54 92.6
SEGI_38873 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 9.1e-23 113.2 194 35.6
arahy.Tifrunner.gnm1.ann1.9M02QF Arachis hypogaea HOM05D000431 ORTHO05D007853 3.5e-14 84.7 123 37.4
BolC3t20551H Brassica oleracea HOM05D006313 ORTHO05D007853 1.8e-07 62.4 52 53.8
Os06g0507400 Oryza sativa ssp. japonica HOM05D001597 ORTHO05D001512 4.5e-06 57.8 242 27.3
Ah.12g052180 Amaranthus hybridus HOM05D001597 ORTHO05D001512 5.9e-06 57.4 167 30.5


User provided reference genes

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