Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0304321 Rosa chinensis HOM05D006577 ORTHO05D008428 3.4e-250 868.2 566 100.0
FvH4_2g37380 Fragaria vesca HOM05D006577 ORTHO05D008428 9.4e-192 674.1 431 88.6
FAN20G0322 Fragaria x ananassa HOM05D006577 ORTHO05D008428 1.1e-184 650.6 423 83.7
FAN27G1697 Fragaria x ananassa HOM05D006577 ORTHO05D008428 4.7e-183 645.2 612 76.3
FAN21G2299 Fragaria x ananassa HOM05D006577 ORTHO05D008428 9.8e-181 637.5 563 78.9
Prupe.1G353400 Prunus persica HOM05D006577 ORTHO05D008428 5.1e-153 545.4 402 74.6
MD08G1001400 Malus domestica HOM05D006577 ORTHO05D008428 7.3e-152 541.6 429 72.5
CiPaw.11G075200 Carya illinoinensis HOM05D006577 ORTHO05D008428 1.7e-137 493.8 311 82.0
Cfa012291 Carpinus fangiana HOM05D000435 ORTHO05D000430 3.3e-136 489.6 308 80.8
Glyma.01G154300 Glycine max HOM05D006577 ORTHO05D008428 2.8e-135 486.5 310 79.0
arahy.Tifrunner.gnm1.ann1.0U4NMV Arachis hypogaea HOM05D006577 ORTHO05D008428 6.2e-135 485.3 436 63.8
arahy.Tifrunner.gnm1.ann1.Y0J304 Arachis hypogaea HOM05D006577 ORTHO05D008428 6.2e-135 485.3 436 63.8
GSVIVG01036870001 Vitis vinifera HOM05D006577 ORTHO05D008428 1.8e-134 483.8 314 80.9
Psat1g131640 Pisum sativum HOM05D006577 ORTHO05D008428 6.9e-134 481.9 312 79.2
Lj2g0006155 Lotus japonicus HOM05D006577 ORTHO05D008428 5.8e-133 478.8 312 78.2
TPR.G29075 Trifolium pratense HOM05D006577 ORTHO05D008428 7.6e-133 478.4 402 70.6
COL.COLO4_11282 Corchorus olitorius HOM05D006577 ORTHO05D008428 9.9e-133 478.0 313 78.9
CSS0014058 Camellia sinensis var. sinensis HOM05D006577 ORTHO05D008428 1.4e-131 474.2 313 77.6
Ca_13135_v3 Cicer arietinum L. HOM05D006577 ORTHO05D008428 1.9e-131 473.8 401 68.3
VMungo1215G3406 Vigna mungo HOM05D006577 ORTHO05D008428 2.4e-131 473.4 308 80.2
Dinv41806 Davidia involucrata HOM05D006577 ORTHO05D008428 3.2e-131 473.0 319 77.7
Cc08_g05650 Coffea canephora HOM05D006577 ORTHO05D008428 4.2e-131 472.6 337 76.0
Glyma.11G090300 Glycine max HOM05D006577 ORTHO05D008428 5.4e-131 472.2 313 76.7
Haze_08434 Corylus avellana HOM05D006577 ORTHO05D008428 9.3e-131 471.5 415 70.4
Phvul.002G121300 Phaseolus vulgaris HOM05D006577 ORTHO05D008428 1.2e-130 471.1 417 68.3
CAN.G1026.7 Capsicum annuum HOM05D006577 ORTHO05D008428 1.6e-130 470.7 310 78.1
Atru.chr8.2629 Acer truncatum HOM05D006577 ORTHO05D008428 2.1e-130 470.3 321 75.1
CsaV3_4G027910 Cucumis sativus L. HOM05D006577 ORTHO05D008428 6.0e-130 468.8 316 76.6
Eucgr.D02560 Eucalyptus grandis HOM05D006577 ORTHO05D008428 1.0e-129 468.0 318 75.8
Sopen08g024050 Solanum pennellii HOM05D006577 ORTHO05D008428 1.3e-129 467.6 309 79.0
Actinidia32789 Actinidia chinensis HOM05D006577 ORTHO05D008428 3.9e-129 466.1 312 75.6
MELO3C010522.2 Cucumis melo HOM05D006577 ORTHO05D008428 1.1e-128 464.5 315 76.2
Medtr2g040410 Medicago truncatula HOM05D006577 ORTHO05D008428 1.1e-128 464.5 407 67.1
Nitab4.5_0007095g0010 Nicotiana tabacum HOM05D006577 ORTHO05D008428 1.1e-128 464.5 311 76.8
Thecc.03G318900 Theobroma cacao HOM05D006577 ORTHO05D008428 1.1e-128 464.5 318 77.0
Manes.17G000100 Manihot esculenta HOM05D006577 ORTHO05D008428 1.5e-128 464.2 425 63.1
Peaxi162Scf00193g00730 Petunia axillaris HOM05D006577 ORTHO05D008428 1.5e-128 464.2 414 70.5
vmacro00091 Vaccinium macrocarpon HOM05D006577 ORTHO05D008428 1.9e-128 463.8 306 77.5
PGR042G0863 Punica granatum HOM05D006577 ORTHO05D008428 4.3e-128 462.6 315 76.5
Cpa.g.sc90.36 Carica papaya HOM05D006577 ORTHO05D008428 5.6e-128 462.2 436 65.6
CANSAT35G0698 Cannabis sativa HOM05D006577 ORTHO05D008428 7.4e-128 461.8 416 68.3
Rhsim11G0036700 Rhododendron simsii HOM05D006577 ORTHO05D008428 7.4e-128 461.8 308 76.3
TAR629G1131 Trochodendron aralioides HOM05D006577 ORTHO05D008428 9.6e-128 461.5 316 77.8
Solyc08g075420.4 Solanum lycopersicum HOM05D006577 ORTHO05D008428 1.3e-127 461.1 310 77.7
Oeu046783.1 Olea europaea HOM05D006577 ORTHO05D008428 4.8e-127 459.1 314 75.5
Gohir.A08G149500 Gossypium hirsutum HOM05D006577 ORTHO05D008428 1.1e-126 458.0 318 74.8
ECA233G0973 Erigeron canadensis HOM05D006577 ORTHO05D008428 5.3e-126 455.7 310 75.2
Gohir.D08G170500 Gossypium hirsutum HOM05D006577 ORTHO05D008428 1.2e-125 454.5 411 67.2
Nn7g37388 Nelumbo nucifera HOM05D006577 ORTHO05D008428 2.6e-125 453.4 306 75.8
Lalb_Chr16g0380351 Lupinus albus HOM05D006577 ORTHO05D008428 4.5e-125 452.6 401 67.3
Gorai.004G178000 Gossypium raimondii HOM05D006577 ORTHO05D008428 5.8e-125 452.2 410 67.6
TWI73G0063 Tripterygium wilfordii HOM05D006577 ORTHO05D008428 9.9e-125 451.4 395 63.8
Potri.004G236300 Populus trichocarpa HOM05D006577 ORTHO05D008428 6.4e-124 448.7 325 72.9
Ciclev10011516m.g Citrus clementina HOM05D006577 ORTHO05D008428 1.1e-123 448.0 303 75.2
Aqoxy7G00896 Aquilegia oxysepala HOM05D006577 ORTHO05D008428 1.9e-123 447.2 309 74.1
Lsat_1_v5_gn_6_17281 Lactuca sativa HOM05D006577 ORTHO05D008428 1.9e-123 447.2 311 75.2
MSTRG.1757 Avicennia marina HOM05D006577 ORTHO05D008428 3.2e-123 446.4 306 75.8
EL10Ac8g19602 Beta vulgaris HOM05D006577 ORTHO05D008428 3.2e-123 446.4 296 77.4
CDE01G0285 Ceratophyllum demersum HOM05D006577 ORTHO05D008428 1.2e-122 444.5 305 75.4
Aa31LG6G1900 Aethionema arabicum HOM05D006577 ORTHO05D008428 4.6e-122 442.6 317 71.6
CDE12G0431 Ceratophyllum demersum HOM05D006577 ORTHO05D008428 7.9e-122 441.8 305 75.4
AUR62030109 Chenopodium quinoa HOM05D006577 ORTHO05D008428 7.9e-122 441.8 307 73.6
Oeu015543.2 Olea europaea HOM05D006577 ORTHO05D008428 1.8e-121 440.7 467 56.5
AT4G19190 Arabidopsis thaliana HOM05D006577 ORTHO05D008428 3.0e-121 439.9 320 72.5
ClCG11G016060 Citrullus lanatus HOM05D006577 ORTHO05D008428 5.1e-121 439.1 337 70.9
HanXRQChr07g0198411 Helianthus annuus HOM05D006577 ORTHO05D008428 5.1e-121 439.1 297 76.4
AL7G34890 Arabidopsis lyrata HOM05D006577 ORTHO05D008428 8.7e-121 438.3 321 72.3
CARHR226070 Cardamine hirsuta HOM05D006577 ORTHO05D008428 2.4e-118 430.3 320 71.6
Carub.0007s2195 Capsella rubella HOM05D006577 ORTHO05D008428 3.1e-118 429.9 408 63.5
DCAR_030906 Daucus carota HOM05D006577 ORTHO05D008428 3.1e-118 429.9 309 71.2
ATR0568G043 Amborella trichopoda HOM05D006577 ORTHO05D008428 5.3e-118 429.1 332 69.9
BraA01t01062Z Brassica rapa HOM05D006577 ORTHO05D008428 5.3e-118 429.1 460 61.1
Sp7g17900 Schrenkiella parvula HOM05D006577 ORTHO05D008428 9.0e-118 428.3 459 63.2
Migut.E01373 Erythranthe guttata HOM05D006577 ORTHO05D008428 1.2e-117 427.9 308 73.4
C01p13200 Brassica napus HOM05D006577 ORTHO05D008428 2.0e-117 427.2 461 61.0
BolC1t01294H Brassica oleracea HOM05D006577 ORTHO05D008428 3.4e-117 426.4 457 61.3
Thhalv10024821m.g Eutrema salsugineum HOM05D006577 ORTHO05D008428 7.6e-117 425.2 457 60.4
A01p11160 Brassica napus HOM05D006577 ORTHO05D008428 1.3e-116 424.5 460 60.0
SEGI_36653 Sequoiadendron giganteum HOM05D006577 ORTHO05D008428 2.5e-115 420.2 317 69.7
Sabra01G0180600 Salix brachista HOM05D006577 ORTHO05D008428 3.5e-114 416.4 449 61.7
PSO502G0007 Papaver somniferum HOM05D006577 ORTHO05D008428 2.3e-113 413.7 318 68.9
PSO675G5955 Papaver somniferum HOM05D006577 ORTHO05D008428 1.5e-112 411.0 313 69.6
HPP92_002488 Vanilla planifolia HOM05D006577 ORTHO05D008428 9.6e-112 408.3 378 61.6
unitig_37.g12910 Utricularia gibba HOM05D006577 ORTHO05D008428 2.0e-109 400.6 311 67.5
BcaC09g51429 Brassica carinata HOM05D006577 ORTHO05D008428 4.5e-109 399.4 462 58.9
THA.LOC104806196 Tarenaya hassleriana HOM05D006577 ORTHO05D008428 1.9e-107 394.0 451 60.1
Mapoly0190s0006 Marchantia polymorpha HOM05D006577 ORTHO05D008428 2.4e-102 377.1 296 64.2
QL12p004173 Quercus lobata HOM05D006577 ORTHO05D008428 8.5e-100 368.6 648 42.6
Pp3c3_31660 Physcomitrium patens HOM05D006577 ORTHO05D008428 2.7e-98 363.6 305 60.7
SMO172G0042 Selaginella moellendorffii HOM05D006577 ORTHO05D008428 2.3e-97 360.5 389 52.2
BcaC09g51430 Brassica carinata HOM05D006577 ORTHO05D008428 8.8e-97 358.6 268 72.0
Lj3A8G25 Lonicera japonica HOM05D006577 ORTHO05D008428 8.2e-95 352.1 249 73.9
SGA_v2.0_scaffold144G35886 Striga asiatica HOM05D006577 ORTHO05D008428 1.0e-92 345.1 274 69.7
Sc24g0001520 Simmondsia chinensis HOM05D006577 ORTHO05D008428 3.8e-92 343.2 218 80.3
Zm00001eb227500 Zea mays HOM05D006577 ORTHO05D008428 3.0e-81 307.0 216 72.2
CBR_g50314 Chara braunii HOM05D006577 ORTHO05D008428 6.7e-81 305.8 290 55.9
Sed0006082 Sechium edule HOM05D006577 ORTHO05D008428 2.8e-79 300.4 320 57.8
Lj3A28G25 Lonicera japonica HOM05D006577 ORTHO05D008428 6.1e-66 256.1 172 74.4
Ah.09g232390 Amaranthus hybridus HOM05D006577 ORTHO05D008428 2.0e-64 251.1 304 52.0
Hund17694 Selenicereus undatus HOM05D006577 ORTHO05D008428 1.4e-57 228.4 178 69.1
Hund17692 Selenicereus undatus HOM05D006577 ORTHO05D008428 5.7e-56 223.0 128 82.8
FAN21G2282 Fragaria x ananassa HOM05D006577 ORTHO05D011051 2.9e-55 220.7 187 80.2
FAN21G2462 Fragaria x ananassa HOM05D006577 ORTHO05D011051 1.4e-54 218.4 187 79.7
FAN21G2626 Fragaria x ananassa HOM05D006577 ORTHO05D011051 3.9e-52 210.3 187 78.6
Lj9P453T24 Lonicera japonica HOM05D006577 ORTHO05D008428 1.0e-49 202.2 143 69.9
HanXRQChr07g0198421 Helianthus annuus HOM05D006577 ORTHO05D008428 2.3e-49 201.1 174 63.2
MCO15G109 Micromonas commoda HOM05D006577 ORTHO05D008428 2.0e-40 171.4 281 36.7
TPR.G30154 Trifolium pratense HOM05D006577 ORTHO05D008428 4.1e-30 137.1 190 50.0
MD15G1000700 Malus domestica HOM05D006577 ORTHO05D008428 1.5e-27 128.6 116 66.4
CARHR123800 Cardamine hirsuta HOM05D006577 ORTHO05D008428 1.9e-27 128.3 70 85.7
Zm00001eb395460 Zea mays HOM05D006577 ORTHO05D008428 3.1e-25 120.9 113 64.6
Zm00001eb339160 Zea mays HOM05D006577 ORTHO05D008428 3.4e-24 117.5 89 71.9
Os06g0708900 Oryza sativa ssp. japonica HOM05D006577 ORTHO05D008428 1.7e-23 115.2 92 68.5
VMungo0251G3731 Vigna mungo HOM05D006577 ORTHO05D008428 7.1e-22 109.8 88 67.0
Nitab4.5_0000030g0480 Nicotiana tabacum HOM05D006577 ORTHO05D008428 7.8e-21 106.3 60 81.7
AUR62042461 Chenopodium quinoa HOM05D006577 ORTHO05D008428 3.6e-18 97.4 53 81.1
FvH4_3g03932 Fragaria vesca HOM05D006577 ORTHO05D008428 1.7e-15 88.6 39 100.0
Lj3A8T28 Lonicera japonica HOM05D006577 ORTHO05D008428 7.1e-14 83.2 49 83.7
Lj3C28T3 Lonicera japonica HOM05D006577 ORTHO05D008428 7.1e-14 83.2 49 83.7
BcaB08g35318 Brassica carinata HOM05D006577 ORTHO05D008428 3.3e-11 74.3 58 65.5
Cre06.g280700 Chlamydomonas reinhardtii HOM05D006577 ORTHO05D008428 3.3e-11 74.3 136 33.1
TPR.G13376 Trifolium pratense HOM05D006577 ORTHO05D008428 1.1e-09 69.3 67 59.7


User provided reference genes

Program Settings