Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0304291 Rosa chinensis HOM05D005571 ORTHO05D006919 1.4e-108 396.4 207 100.0
FAN27G2782 Fragaria x ananassa HOM05D005571 ORTHO05D006919 1.9e-94 349.4 216 88.4
FvH4_2g37430 Fragaria vesca HOM05D005571 ORTHO05D006919 9.7e-94 347.1 220 86.8
FAN20G2818 Fragaria x ananassa HOM05D005571 ORTHO05D006919 1.5e-91 339.7 216 86.1
FAN15G1374 Fragaria x ananassa HOM05D005571 ORTHO05D006919 9.3e-89 330.5 215 85.1
Potri.005G250800 Populus trichocarpa HOM05D005571 ORTHO05D006919 2.5e-57 226.1 213 64.3
Thecc.08G059400 Theobroma cacao HOM05D005571 ORTHO05D006919 3.2e-57 225.7 216 64.8
Sabra05G0194000 Salix brachista HOM05D005571 ORTHO05D006919 3.6e-56 222.2 213 62.9
TWI56G1114 Tripterygium wilfordii HOM05D005571 ORTHO05D006919 8.8e-55 217.6 210 62.9
COL.COLO4_05218 Corchorus olitorius HOM05D005571 ORTHO05D006919 4.4e-54 215.3 212 62.3
Haze_22782 Corylus avellana HOM05D005571 ORTHO05D006919 1.7e-53 213.4 216 60.6
Duzib093G0863 Durio zibethinus HOM05D005571 ORTHO05D006919 2.8e-53 212.6 216 61.1
Gohir.A05G179400 Gossypium hirsutum HOM05D005571 ORTHO05D006919 4.8e-53 211.8 221 61.1
QL02p014184 Quercus lobata HOM05D005571 ORTHO05D006919 8.3e-53 211.1 218 61.0
CiPaw.08G073400 Carya illinoinensis HOM05D005571 ORTHO05D006919 1.4e-52 210.3 215 61.4
Duzib116G0932 Durio zibethinus HOM05D005571 ORTHO05D006919 1.8e-52 209.9 216 59.7
Gohir.D05G182600 Gossypium hirsutum HOM05D005571 ORTHO05D006919 3.1e-52 209.1 221 61.1
Gorai.009G187900 Gossypium raimondii HOM05D005571 ORTHO05D006919 3.1e-52 209.1 221 61.1
Ciclev10002509m.g Citrus clementina HOM05D005571 ORTHO05D006919 5.4e-52 208.4 213 62.9
Cfa014080 Carpinus fangiana HOM05D005571 ORTHO05D006919 1.2e-51 207.2 215 57.2
TWI12G0392 Tripterygium wilfordii HOM05D005571 ORTHO05D006919 7.7e-51 204.5 210 60.0
Manes.18G005301 Manihot esculenta HOM05D005571 ORTHO05D006919 2.3e-50 203.0 213 60.1
Potri.002G010400 Populus trichocarpa HOM05D005571 ORTHO05D006919 3.8e-50 202.2 212 59.4
ClCG08G009410 Citrullus lanatus HOM05D005571 ORTHO05D006919 5.0e-50 201.8 214 56.5
Sabra02G0007800 Salix brachista HOM05D005571 ORTHO05D006919 1.6e-48 196.8 213 58.7
Lj1g0015612 Lotus japonicus HOM05D005571 ORTHO05D006919 1.0e-47 194.1 217 58.1
CiPaw.07G138600 Carya illinoinensis HOM05D005571 ORTHO05D006919 1.4e-47 193.7 213 58.7
Manes.05G133900 Manihot esculenta HOM05D005571 ORTHO05D006919 3.0e-47 192.6 213 57.3
MELO3C026535.2 Cucumis melo HOM05D005571 ORTHO05D006919 1.2e-46 190.7 215 56.3
Glyma.06G018100 Glycine max HOM05D005571 ORTHO05D006919 1.2e-46 190.7 205 57.1
Actinidia17042 Actinidia chinensis HOM05D005571 ORTHO05D006919 7.5e-46 188.0 214 56.5
vmacro21809 Vaccinium macrocarpon HOM05D005571 ORTHO05D006919 9.8e-46 187.6 217 55.8
Rhsim06G0007100 Rhododendron simsii HOM05D005571 ORTHO05D006919 1.3e-45 187.2 218 55.5
CsaV3_6G031520 Cucumis sativus L. HOM05D005571 ORTHO05D006919 1.7e-45 186.8 215 55.3
GSVIVG01008671001 Vitis vinifera HOM05D005571 ORTHO05D006919 2.8e-45 186.0 211 55.0
Actinidia15492 Actinidia chinensis HOM05D005571 ORTHO05D006919 2.4e-44 183.0 214 54.7
Sed0002015 Sechium edule HOM05D005571 ORTHO05D006919 4.1e-44 182.2 213 54.5
Gorai.005G113600 Gossypium raimondii HOM05D005571 ORTHO05D006919 1.2e-43 180.6 205 56.6
Gohir.D02G100200 Gossypium hirsutum HOM05D005571 ORTHO05D006919 4.5e-43 178.7 205 56.6
Phvul.009G010900 Phaseolus vulgaris HOM05D005571 ORTHO05D006919 4.5e-43 178.7 202 56.9
Hma1.2p1_0157F.1_g069390 Hydrangea macrophylla HOM05D005571 ORTHO05D006919 1.3e-42 177.2 215 53.5
Nitab4.5_0000588g0080 Nicotiana tabacum HOM05D005571 ORTHO05D006919 1.7e-42 176.8 215 54.9
Glyma.04G017800 Glycine max HOM05D005571 ORTHO05D006919 8.6e-42 174.5 205 54.6
VMungo1309G0957 Vigna mungo HOM05D005571 ORTHO05D006919 1.9e-41 173.3 201 54.7
CAN.G311.116 Capsicum annuum HOM05D005571 ORTHO05D006919 3.3e-41 172.6 217 53.9
Cfa012650 Carpinus fangiana HOM05D005571 ORTHO05D006919 3.3e-41 172.6 191 55.5
PGR083G0609 Punica granatum HOM05D005571 ORTHO05D006919 9.5e-41 171.0 213 51.6
Prupe.1G354300 Prunus persica HOM05D005571 ORTHO05D006919 1.2e-40 170.6 284 50.0
Migut.C00385 Erythranthe guttata HOM05D005571 ORTHO05D006919 1.0e-39 167.5 225 53.8
Peaxi162Scf00893g00005 Petunia axillaris HOM05D005571 ORTHO05D006919 1.0e-39 167.5 212 53.8
TPR.G38112 Trifolium pratense HOM05D005571 ORTHO05D006919 1.8e-39 166.8 219 52.5
THA.LOC104825425 Tarenaya hassleriana HOM05D005571 ORTHO05D006919 1.5e-38 163.7 191 56.5
TAR628G0603 Trochodendron aralioides HOM05D005571 ORTHO05D006919 4.4e-38 162.2 220 50.9
Dinv05532 Davidia involucrata HOM05D005571 ORTHO05D006919 1.3e-37 160.6 188 55.9
Cc10_g00650 Coffea canephora HOM05D005571 ORTHO05D006919 1.7e-37 160.2 217 51.6
Medtr3g115300 Medicago truncatula HOM05D005571 ORTHO05D006919 1.7e-37 160.2 222 51.4
arahy.Tifrunner.gnm1.ann1.G9B5FS Arachis hypogaea HOM05D005571 ORTHO05D006919 1.1e-36 157.5 224 52.2
Lalb_Chr23g0265781 Lupinus albus HOM05D005571 ORTHO05D006919 1.9e-36 156.8 214 53.7
arahy.Tifrunner.gnm1.ann1.VC4QUA Arachis hypogaea HOM05D005571 ORTHO05D006919 2.4e-36 156.4 213 53.1
Lj4A11T70 Lonicera japonica HOM05D005571 ORTHO05D006919 4.1e-36 155.6 220 50.0
CSS0030992 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 7.0e-36 154.8 211 49.8
CSS0029462 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 9.2e-36 154.5 216 49.5
Oeu064631.1 Olea europaea HOM05D005571 ORTHO05D006919 1.6e-35 153.7 215 50.2
PGSC0003DMG400009903 Solanum tuberosum HOM05D005571 ORTHO05D006919 2.7e-35 152.9 216 50.5
SalBow7G0698 Salvia bowleyana HOM05D005571 ORTHO05D006919 3.5e-35 152.5 212 51.4
SalBow5G5667 Salvia bowleyana HOM05D005571 ORTHO05D006919 1.3e-34 150.6 198 52.5
Psat0s2670g0120 Pisum sativum HOM05D005571 ORTHO05D006919 3.9e-34 149.1 223 48.9
Sopen04g035980 Solanum pennellii HOM05D005571 ORTHO05D006919 1.1e-33 147.5 215 49.8
MSTRG.24929 Avicennia marina HOM05D005571 ORTHO05D006919 7.3e-33 144.8 220 50.5
CANSAT25G0564 Cannabis sativa HOM05D005571 ORTHO05D006919 7.3e-33 144.8 210 50.0
Oeu035840.1 Olea europaea HOM05D005571 ORTHO05D006919 1.6e-32 143.7 207 47.8
Aqoxy6G01708 Aquilegia oxysepala HOM05D005571 ORTHO05D006919 8.0e-32 141.4 218 45.0
Nn6g31737 Nelumbo nucifera HOM05D005571 ORTHO05D006919 1.1e-31 141.0 205 49.3
Oeu000692.1 Olea europaea HOM05D005571 ORTHO05D006919 3.1e-31 139.4 215 48.8
THA.LOC104813174 Tarenaya hassleriana HOM05D005571 ORTHO05D006919 3.1e-31 139.4 190 51.6
Ca_15432_v3 Cicer arietinum L. HOM05D005571 ORTHO05D006919 4.0e-31 139.0 171 53.8
Ca_15457_v3 Cicer arietinum L. HOM05D005571 ORTHO05D006919 4.0e-31 139.0 171 53.8
Sc02g0009100 Simmondsia chinensis HOM05D005571 ORTHO05D006919 2.0e-30 136.7 207 46.4
DCAR_009532 Daucus carota HOM05D005571 ORTHO05D006919 2.6e-30 136.3 214 50.9
Atru.chr13.137 Acer truncatum HOM05D005571 ORTHO05D006919 3.4e-30 136.0 147 59.2
Aa31LG9G12460 Aethionema arabicum HOM05D005571 ORTHO05D006919 3.4e-30 136.0 210 49.0
MSTRG.977 Avicennia marina HOM05D005571 ORTHO05D006919 1.3e-29 134.0 202 49.0
Lsat_1_v5_gn_2_4041 Lactuca sativa HOM05D005571 ORTHO05D006919 1.7e-29 133.7 193 47.7
HanXRQChr14g0428071 Helianthus annuus HOM05D005571 ORTHO05D006919 1.1e-28 131.0 213 43.7
HanXRQChr06g0183961 Helianthus annuus HOM05D005571 ORTHO05D006919 7.0e-28 128.3 217 45.6
Hund01764 Selenicereus undatus HOM05D005571 ORTHO05D006919 1.6e-27 127.1 213 46.9
BcaB01g04868 Brassica carinata HOM05D005571 ORTHO05D006919 2.1e-27 126.7 208 44.2
Carub.0008s0685 Capsella rubella HOM05D005571 ORTHO05D006919 4.6e-27 125.6 208 45.7
SGA_v2.0_scaffold133G34635 Striga asiatica HOM05D005571 ORTHO05D006919 1.0e-26 124.4 206 48.5
CSS0039739 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 1.3e-26 124.0 212 45.3
CARHR284960 Cardamine hirsuta HOM05D005571 ORTHO05D006919 1.7e-26 123.6 216 46.3
Thhalv10014687m.g Eutrema salsugineum HOM05D005571 ORTHO05D006919 2.3e-26 123.2 197 49.7
AL8G19260 Arabidopsis lyrata HOM05D005571 ORTHO05D006919 3.0e-26 122.9 211 46.4
PSO675G2006 Papaver somniferum HOM05D005571 ORTHO05D006919 3.0e-26 122.9 219 42.0
Sp6g25100 Schrenkiella parvula HOM05D005571 ORTHO05D006919 3.0e-26 122.9 205 46.8
AT5G42330 Arabidopsis thaliana HOM05D005571 ORTHO05D006919 3.9e-26 122.5 206 48.5
Dinv31944 Davidia involucrata HOM05D005571 ORTHO05D006919 1.5e-25 120.6 211 45.5
BcaB01g05139 Brassica carinata HOM05D005571 ORTHO05D006919 1.9e-25 120.2 186 47.3
MBI05_g43168_MAGBIO Magnolia biondii HOM05D005571 ORTHO05D006919 2.5e-25 119.8 212 44.3
PSO541G4697 Papaver somniferum HOM05D005571 ORTHO05D006919 2.5e-25 119.8 219 41.1
C03p11000 Brassica napus HOM05D005571 ORTHO05D006919 4.3e-25 119.0 186 46.8
ECA238G3324 Erigeron canadensis HOM05D005571 ORTHO05D007881 9.5e-25 117.9 155 50.3
BolC3t13569H Brassica oleracea HOM05D005571 ORTHO05D006919 2.1e-24 116.7 188 48.4
Sabra11G0114300 Salix brachista HOM05D005571 ORTHO05D006919 2.8e-24 116.3 120 59.2
A03p09420 Brassica napus HOM05D005571 ORTHO05D006919 6.2e-24 115.2 188 46.3
BraA03t10260Z Brassica rapa HOM05D005571 ORTHO05D006919 6.2e-24 115.2 188 46.3
unitig_747.g21542 Utricularia gibba HOM05D005571 ORTHO05D006919 1.4e-23 114.0 222 41.0
Ah.11g041150 Amaranthus hybridus HOM05D005571 ORTHO05D006919 2.0e-22 110.2 180 44.4
EL10Ac1g01953 Beta vulgaris HOM05D005571 ORTHO05D006919 8.3e-21 104.8 214 43.9
CSS0038566 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 1.1e-20 104.4 212 38.7
BcaB08g36584 Brassica carinata HOM05D005571 ORTHO05D006919 3.2e-20 102.8 203 42.4
Cpa.g.c36471 Carica papaya HOM05D005571 ORTHO05D006919 5.4e-20 102.1 88 68.2
Hund05103 Selenicereus undatus HOM05D001348 ORTHO05D002788 1.2e-19 100.9 191 45.0
AUR62040795 Chenopodium quinoa HOM05D005571 ORTHO05D006919 1.6e-19 100.5 196 43.4
Gohir.A02G084300 Gossypium hirsutum HOM05D005571 ORTHO05D006919 3.5e-19 99.4 146 48.6
Duzib128G0429 Durio zibethinus HOM05D005571 ORTHO05D006919 4.6e-19 99.0 103 59.2
SHI42933 Sapria himalayana HOM05D005571 ORTHO05D006919 1.9e-17 93.6 179 40.2
unitig_0.g2084 Utricularia gibba HOM05D005571 ORTHO05D006919 6.2e-16 88.6 169 41.4
BcaC04g18579 Brassica carinata HOM05D005571 ORTHO05D006919 1.4e-12 77.4 165 38.8
C09p56960 Brassica napus HOM05D005571 ORTHO05D006919 1.4e-12 77.4 165 38.8
BolC9t58559H Brassica oleracea HOM05D005571 ORTHO05D006919 1.4e-12 77.4 165 38.8
Solyc04g082380.4 Solanum lycopersicum HOM05D005571 ORTHO05D006919 2.4e-12 76.6 104 49.0
Os07g0474300 Oryza sativa ssp. japonica HOM05D033341 ORTHO05D036979 5.4e-12 75.5 247 35.2
Sc15g0004410 Simmondsia chinensis HOM05D005571 ORTHO05D006919 7.8e-11 71.6 152 40.1
Sabra11G0115000 Salix brachista HOM05D005571 ORTHO05D006919 1.7e-10 70.5 78 55.1
Sabra11G0115600 Salix brachista HOM05D005571 ORTHO05D006919 1.7e-10 70.5 78 55.1
BraA10t44107Z Brassica rapa HOM05D005571 ORTHO05D006919 3.0e-10 69.7 174 37.4
CDE04G0695 Ceratophyllum demersum HOM05D005571 ORTHO05D006919 5.1e-10 68.9 166 38.0
HPP92_021048 Vanilla planifolia HOM05D005571 ORTHO05D006919 3.3e-09 66.2 164 38.4
Thecc.07G149400 Theobroma cacao HOM05D005571 ORTHO05D004433 5.6e-09 65.5 86 48.8
A10p20370 Brassica napus HOM05D005571 ORTHO05D006919 6.2e-08 62.0 148 34.5
CDE05G1909 Ceratophyllum demersum HOM05D005571 ORTHO05D006919 8.1e-08 61.6 179 34.6
Thecc.06G128900 Theobroma cacao HOM05D005571 ORTHO05D006919 1.8e-07 60.5 77 48.1
A02p05480 Brassica napus HOM05D005571 ORTHO05D006919 2.6e-06 56.6 120 39.2
BraA02t05499Z Brassica rapa HOM05D005571 ORTHO05D006919 2.6e-06 56.6 120 39.2
BcaC03g13663 Brassica carinata HOM05D005571 ORTHO05D006919 5.8e-06 55.5 120 38.3
BNapus_Darmor_BZH_scaffold_38p02630 Brassica napus HOM05D005571 ORTHO05D006919 5.8e-06 55.5 120 38.3
AUR62036861 Chenopodium quinoa HOM05D005571 ORTHO05D006919 7.6e-06 55.1 195 32.3


User provided reference genes

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