Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0304101 Rosa chinensis HOM05D006241 ORTHO05D007842 5.1e-29 130.2 57 100.0
FAN20G1861 Fragaria x ananassa HOM05D006241 ORTHO05D007842 1.7e-24 115.2 50 96.0
MD15G1003400 Malus domestica HOM05D006241 ORTHO05D007842 3.8e-24 114.0 54 83.3
Nitab4.5_0000588g0230 Nicotiana tabacum HOM05D006241 ORTHO05D007842 4.9e-24 113.6 55 85.5
FAN15G0812 Fragaria x ananassa HOM05D006241 ORTHO05D007842 6.5e-24 113.2 50 94.0
MD08G1003800 Malus domestica HOM05D006241 ORTHO05D007842 6.5e-24 113.2 54 83.3
FvH4_2g37630 Fragaria vesca HOM05D006241 ORTHO05D007842 1.1e-23 112.5 50 94.0
SGA_v2.0_scaffold25G11191 Striga asiatica HOM05D006241 ORTHO05D007842 5.5e-23 110.2 50 90.0
Migut.N03197 Erythranthe guttata HOM05D006241 ORTHO05D007842 9.3e-23 109.4 50 90.0
arahy.Tifrunner.gnm1.ann1.1F1YZI Arachis hypogaea HOM05D006241 ORTHO05D007842 2.1e-22 108.2 50 88.0
arahy.Tifrunner.gnm1.ann1.1NSU2H Arachis hypogaea HOM05D006241 ORTHO05D007842 2.1e-22 108.2 50 88.0
arahy.Tifrunner.gnm1.ann1.4R2MNP Arachis hypogaea HOM05D006241 ORTHO05D007842 2.1e-22 108.2 50 88.0
arahy.Tifrunner.gnm1.ann1.L8CN1K Arachis hypogaea HOM05D006241 ORTHO05D007842 2.1e-22 108.2 50 88.0
Lj3g0010530 Lotus japonicus HOM05D006241 ORTHO05D007842 2.1e-22 108.2 50 90.0
VMungo1127G1075 Vigna mungo HOM05D006241 ORTHO05D007842 3.5e-22 107.5 48 91.7
CiPaw.08G071900 Carya illinoinensis HOM05D006241 ORTHO05D007842 6.0e-22 106.7 50 86.0
Glyma.11G099500 Glycine max HOM05D006241 ORTHO05D007842 6.0e-22 106.7 50 86.0
Manes.05G136000 Manihot esculenta HOM05D006241 ORTHO05D007842 6.0e-22 106.7 50 88.0
Prupe.1G355800 Prunus persica HOM05D006241 ORTHO05D007842 6.0e-22 106.7 50 84.0
Atru.chr13.161 Acer truncatum HOM05D006241 ORTHO05D007842 7.9e-22 106.3 51 86.3
CAN.G311.105 Capsicum annuum HOM05D006241 ORTHO05D007842 7.9e-22 106.3 50 86.0
CiPaw.07G140100 Carya illinoinensis HOM05D006241 ORTHO05D007842 7.9e-22 106.3 50 86.0
Aa31LG4G6300 Aethionema arabicum HOM05D006241 ORTHO05D007842 1.0e-21 105.9 50 86.0
Glyma.12G025500 Glycine max HOM05D006241 ORTHO05D007842 1.0e-21 105.9 50 88.0
Cfa014051 Carpinus fangiana HOM05D006241 ORTHO05D007842 1.3e-21 105.5 50 82.0
MELO3C017010.2 Cucumis melo HOM05D006241 ORTHO05D007842 1.3e-21 105.5 49 89.8
TWI12G0416 Tripterygium wilfordii HOM05D006241 ORTHO05D007842 1.3e-21 105.5 49 85.7
CARHR069760 Cardamine hirsuta HOM05D006241 ORTHO05D007842 1.8e-21 105.1 50 84.0
Manes.18G006720 Manihot esculenta HOM05D006241 ORTHO05D007842 1.8e-21 105.1 50 84.0
PGSC0003DMG400009898 Solanum tuberosum HOM05D006241 ORTHO05D007842 1.8e-21 105.1 50 84.0
Ca_19011_v3 Cicer arietinum L. HOM05D006241 ORTHO05D007842 2.3e-21 104.8 49 89.8
Duzib116G0823 Durio zibethinus HOM05D006241 ORTHO05D007842 2.3e-21 104.8 50 88.0
Gohir.A01G107600 Gossypium hirsutum HOM05D006241 ORTHO05D007842 2.3e-21 104.8 50 86.0
Potri.005G248600 Populus trichocarpa HOM05D006241 ORTHO05D007842 2.3e-21 104.8 50 86.0
QL02p013848 Quercus lobata HOM05D006241 ORTHO05D007842 2.3e-21 104.8 50 82.0
TWI56G0163 Tripterygium wilfordii HOM05D006241 ORTHO05D007842 2.3e-21 104.8 49 83.7
AL2G36270 Arabidopsis lyrata HOM05D006241 ORTHO05D007842 3.0e-21 104.4 49 85.7
AT1G76200 Arabidopsis thaliana HOM05D006241 ORTHO05D007842 3.0e-21 104.4 49 85.7
CsaV3_4G037120 Cucumis sativus L. HOM05D006241 ORTHO05D007842 3.0e-21 104.4 49 89.8
Potri.002G012700 Populus trichocarpa HOM05D006241 ORTHO05D007842 3.0e-21 104.4 50 84.0
Sabra05G0192000 Salix brachista HOM05D006241 ORTHO05D007842 3.0e-21 104.4 50 84.0
PGR031G1817 Punica granatum HOM05D006241 ORTHO05D007842 3.9e-21 104.0 49 85.7
THA.LOC109116669 Tarenaya hassleriana HOM05D006241 ORTHO05D007842 3.9e-21 104.0 50 84.0
COL.COLO4_21601 Corchorus olitorius HOM05D006241 ORTHO05D007842 5.1e-21 103.6 49 87.8
Gohir.D01G094000 Gossypium hirsutum HOM05D006241 ORTHO05D007842 5.1e-21 103.6 50 86.0
Gorai.002G119300 Gossypium raimondii HOM05D006241 ORTHO05D007842 5.1e-21 103.6 50 86.0
Cc10_g00830 Coffea canephora HOM05D006241 ORTHO05D007842 6.7e-21 103.2 49 81.6
Gohir.A05G180800 Gossypium hirsutum HOM05D006241 ORTHO05D007842 6.7e-21 103.2 50 86.0
Gorai.009G189100 Gossypium raimondii HOM05D006241 ORTHO05D007842 6.7e-21 103.2 50 86.0
Psat7g177480 Pisum sativum HOM05D006241 ORTHO05D007842 6.7e-21 103.2 51 88.2
THA.LOC104811457 Tarenaya hassleriana HOM05D006241 ORTHO05D007842 6.7e-21 103.2 50 84.0
Duzib093G0667 Durio zibethinus HOM05D006241 ORTHO05D007842 1.1e-20 102.4 50 86.0
Thecc.08G056300 Theobroma cacao HOM05D006241 ORTHO05D007842 1.1e-20 102.4 50 84.0
CANSAT54G0965 Cannabis sativa HOM05D006241 ORTHO05D007842 1.9e-20 101.7 50 80.0
Phvul.011G027800 Phaseolus vulgaris HOM05D006241 ORTHO05D007842 1.9e-20 101.7 48 85.4
Gohir.D05G183800 Gossypium hirsutum HOM05D006241 ORTHO05D007842 2.5e-20 101.3 50 84.0
Duzib041G0756 Durio zibethinus HOM05D006241 ORTHO05D007842 3.3e-20 100.9 50 84.0
Eucgr.F01733 Eucalyptus grandis HOM05D006241 ORTHO05D007842 3.3e-20 100.9 49 83.7
CSS0008517 Camellia sinensis var. sinensis HOM05D006241 ORTHO05D007842 9.7e-20 99.4 53 83.0
Dinv39579 Davidia involucrata HOM05D006241 ORTHO05D007842 9.7e-20 99.4 53 81.1
Actinidia17033 Actinidia chinensis HOM05D006241 ORTHO05D007842 1.3e-19 99.0 48 81.2
Aqoxy6G01804 Aquilegia oxysepala HOM05D006241 ORTHO05D007842 1.6e-19 98.6 49 79.6
TAR376G1175 Trochodendron aralioides HOM05D006241 ORTHO05D007842 1.6e-19 98.6 48 81.2
Thhalv10019410m.g Eutrema salsugineum HOM05D006241 ORTHO05D007842 2.2e-19 98.2 50 84.0
HanXRQChr17g0555751 Helianthus annuus HOM05D006241 ORTHO05D007842 2.8e-19 97.8 54 75.9
Lsat_1_v5_gn_8_133721 Lactuca sativa HOM05D006241 ORTHO05D007842 4.8e-19 97.1 49 81.6
Carub.0002s2310 Capsella rubella HOM05D006241 ORTHO05D007842 6.3e-19 96.7 50 82.0
Ciclev10010113m.g Citrus clementina HOM05D006241 ORTHO05D007842 6.3e-19 96.7 49 77.6
PSO357G0248 Papaver somniferum HOM05D006241 ORTHO05D007842 6.3e-19 96.7 49 75.5
Sp5g31350 Schrenkiella parvula HOM05D006241 ORTHO05D007842 6.3e-19 96.7 50 82.0
Cpa.g.sc222.6 Carica papaya HOM05D006241 ORTHO05D007842 8.2e-19 96.3 49 81.6
HanXRQChr17g0554651 Helianthus annuus HOM05D006241 ORTHO05D007842 8.2e-19 96.3 51 78.4
Actinidia15484 Actinidia chinensis HOM05D006241 ORTHO05D007842 1.1e-18 95.9 48 77.1
PSO170G5266 Papaver somniferum HOM05D006241 ORTHO05D007842 1.1e-18 95.9 49 75.5
BcaB02g07055 Brassica carinata HOM05D006241 ORTHO05D007842 1.4e-18 95.5 50 80.0
Lalb_Chr17g0337811 Lupinus albus HOM05D006241 ORTHO05D007842 1.4e-18 95.5 52 76.9
TAR381G1678 Trochodendron aralioides HOM05D006241 ORTHO05D007842 1.4e-18 95.5 48 79.2
Hund08526 Selenicereus undatus HOM05D006241 ORTHO05D007842 2.4e-18 94.7 55 76.4
Dinv31923 Davidia involucrata HOM05D006241 ORTHO05D007842 4.1e-18 94.0 52 75.0
Lalb_Chr10g0094931 Lupinus albus HOM05D006241 ORTHO05D007842 4.1e-18 94.0 54 74.1
Nn5g30908 Nelumbo nucifera HOM05D006241 ORTHO05D007842 5.3e-18 93.6 52 76.9
BcaC08g47115 Brassica carinata HOM05D006241 ORTHO05D007842 6.9e-18 93.2 50 78.0
BcaC08g47119 Brassica carinata HOM05D006241 ORTHO05D007842 6.9e-18 93.2 47 78.7
BcaC08g47281 Brassica carinata HOM05D006241 ORTHO05D007842 6.9e-18 93.2 47 78.7
A07p41770 Brassica napus HOM05D006241 ORTHO05D007842 6.9e-18 93.2 47 78.7
C06p50150 Brassica napus HOM05D006241 ORTHO05D007842 6.9e-18 93.2 47 78.7
BolC6t40055H Brassica oleracea HOM05D006241 ORTHO05D007842 6.9e-18 93.2 47 78.7
BraA07t31707Z Brassica rapa HOM05D006241 ORTHO05D007842 6.9e-18 93.2 47 78.7
MBI19_g43741_MAGBIO Magnolia biondii HOM05D006241 ORTHO05D007842 6.9e-18 93.2 55 70.9
A07p28590 Brassica napus HOM05D006241 ORTHO05D007842 1.2e-17 92.4 50 78.0
BraA07t30500Z Brassica rapa HOM05D006241 ORTHO05D007842 1.2e-17 92.4 50 78.0
BcaB05g24973 Brassica carinata HOM05D006241 ORTHO05D007842 2.0e-17 91.7 47 76.6
ECA248G1104 Erigeron canadensis HOM05D006241 ORTHO05D007842 2.6e-17 91.3 53 73.6
BolC2t09367H Brassica oleracea HOM05D006241 ORTHO05D007842 5.9e-17 90.1 50 76.0
CDE05G0950 Ceratophyllum demersum HOM05D006241 ORTHO05D007842 5.9e-17 90.1 49 73.5
CDE05G1511 Ceratophyllum demersum HOM05D006241 ORTHO05D007842 5.9e-17 90.1 49 73.5
Os05g0122900 Oryza sativa ssp. japonica HOM05D006241 ORTHO05D007842 7.6e-17 89.7 49 77.6
HPP92_021050 Vanilla planifolia HOM05D006241 ORTHO05D007842 7.6e-17 89.7 51 74.5
BraA02t07081Z Brassica rapa HOM05D006241 ORTHO05D007842 1.0e-16 89.4 50 76.0
BcaC08g45539 Brassica carinata HOM05D006241 ORTHO05D007842 1.3e-16 89.0 48 72.9
C06p32170 Brassica napus HOM05D006241 ORTHO05D007842 1.3e-16 89.0 48 72.9
BolC6t38340H Brassica oleracea HOM05D006241 ORTHO05D007842 1.3e-16 89.0 48 72.9
SalBow6G4847 Salvia bowleyana HOM05D006241 ORTHO05D007842 1.3e-16 89.0 52 76.9
ATR0661G361 Amborella trichopoda HOM05D006241 ORTHO05D007842 1.7e-16 88.6 49 69.4
AagrBONN_evm.TU.Sc2ySwM_117.850 Anthoceros agrestis HOM05D006241 ORTHO05D007842 7.2e-15 83.2 53 60.4
Zm00001eb356460 Zea mays HOM05D006241 ORTHO05D007842 1.6e-14 82.0 50 70.0
Zm00001eb294120 Zea mays HOM05D006241 ORTHO05D007842 2.1e-14 81.6 49 73.5
GSVIVG01008691001 Vitis vinifera HOM05D006241 ORTHO05D007842 1.0e-13 79.3 35 82.9
Pp3c21_21340 Physcomitrium patens HOM05D006241 ORTHO05D007842 6.7e-13 76.6 50 64.0
Pp3c18_1920 Physcomitrium patens HOM05D006241 ORTHO05D007842 3.3e-12 74.3 50 62.0
Os06g0725400 Oryza sativa ssp. japonica HOM05D006241 ORTHO05D007842 4.3e-12 73.9 50 70.0
Sabra07G0051400 Salix brachista HOM05D006241 ORTHO05D349851 4.3e-12 73.9 50 64.0
Mapoly0108s0047 Marchantia polymorpha HOM05D006241 ORTHO05D007842 1.3e-11 72.4 50 58.0
Sed0002381 Sechium edule HOM05D006241 ORTHO05D007842 2.2e-11 71.6 34 85.3
ClCG05G015200 Citrullus lanatus HOM05D006241 ORTHO05D007842 2.8e-11 71.2 34 82.4
DCAR_013903 Daucus carota HOM05D006241 ORTHO05D007842 2.8e-11 71.2 34 85.3
unitig_746.g26818 Utricularia gibba HOM05D003604 ORTHO05D000209 4.8e-11 70.5 32 84.4
DCAR_016755 Daucus carota HOM05D006241 ORTHO05D007842 8.2e-11 69.7 56 57.1
Medtr4g075160 Medicago truncatula HOM05D006241 ORTHO05D007842 8.2e-11 69.7 38 81.6
Ah.01g001690 Amaranthus hybridus HOM05D006241 ORTHO05D007842 1.1e-10 69.3 36 80.6
AUR62015196 Chenopodium quinoa HOM05D006241 ORTHO05D007842 1.4e-10 68.9 36 77.8
AUR62017658 Chenopodium quinoa HOM05D006241 ORTHO05D007842 1.4e-10 68.9 36 77.8
Mapoly0103s0030 Marchantia polymorpha HOM05D006241 ORTHO05D007842 1.4e-10 68.9 50 54.0
Ah.01g013010 Amaranthus hybridus HOM05D006241 ORTHO05D007842 2.4e-10 68.2 36 77.8
Nn6g31777 Nelumbo nucifera HOM05D006241 ORTHO05D007842 2.0e-09 65.1 41 63.4
MBI19_g35281_MAGBIO Magnolia biondii HOM05D006241 ORTHO05D007842 5.9e-09 63.5 36 69.4
MCO07G568 Micromonas commoda HOM05D006241 ORTHO05D007842 1.2e-06 55.8 50 44.0


User provided reference genes

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