Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0303661 Rosa chinensis HOM05D007648 ORTHO05D009613 5.2e-38 160.6 84 100.0
FvH4_2g37960 Fragaria vesca HOM05D007648 ORTHO05D009613 1.6e-34 149.1 84 91.7
FAN15G0474 Fragaria x ananassa HOM05D007648 ORTHO05D009613 2.3e-33 145.2 84 89.3
FAN20G1741 Fragaria x ananassa HOM05D007648 ORTHO05D009613 3.9e-33 144.4 84 89.3
Prupe.1G359500 Prunus persica HOM05D007648 ORTHO05D009613 3.3e-32 141.4 84 84.5
MD15G1006800 Malus domestica HOM05D007648 ORTHO05D009613 2.9e-28 128.3 81 79.0
MD08G1007600 Malus domestica HOM05D007648 ORTHO05D009613 3.7e-28 127.9 81 80.2
Sabra14G0141300 Salix brachista HOM05D000525 ORTHO05D001368 6.4e-28 127.1 81 79.0
ClCG05G015420 Citrullus lanatus HOM05D007648 ORTHO05D009613 1.1e-27 126.3 81 77.8
arahy.Tifrunner.gnm1.ann1.8I3IQY Arachis hypogaea HOM05D007648 ORTHO05D009613 2.4e-27 125.2 79 78.5
arahy.Tifrunner.gnm1.ann1.EILY3I Arachis hypogaea HOM05D007648 ORTHO05D009613 3.2e-27 124.8 77 80.5
QL02p012929 Quercus lobata HOM05D007648 ORTHO05D009613 3.2e-27 124.8 81 77.8
Potri.014G181400 Populus trichocarpa HOM05D007648 ORTHO05D009613 4.1e-27 124.4 81 77.8
Carub.0002s2295 Capsella rubella HOM05D007648 ORTHO05D009613 1.2e-26 122.9 81 74.1
Ca_13484_v3 Cicer arietinum L. HOM05D007648 ORTHO05D009613 1.2e-26 122.9 77 80.5
Lj5g0008894 Lotus japonicus HOM05D007648 ORTHO05D009613 1.2e-26 122.9 77 77.9
Psat6g001120 Pisum sativum HOM05D007648 ORTHO05D009613 1.2e-26 122.9 77 80.5
GSVIVG01008741001 Vitis vinifera HOM05D007648 ORTHO05D009613 1.2e-26 122.9 81 79.0
Sed0006121 Sechium edule HOM05D007648 ORTHO05D009613 1.6e-26 122.5 81 77.8
CARHR069590 Cardamine hirsuta HOM05D007648 ORTHO05D009613 2.0e-26 122.1 81 74.1
Dinv31891 Davidia involucrata HOM05D007648 ORTHO05D009613 2.0e-26 122.1 81 76.5
AT1G76065 Arabidopsis thaliana HOM05D007648 ORTHO05D009613 2.7e-26 121.7 77 76.6
Thhalv10019391m.g Eutrema salsugineum HOM05D007648 ORTHO05D009613 3.5e-26 121.3 81 75.3
Phvul.001G002600 Phaseolus vulgaris HOM05D007648 ORTHO05D009613 3.5e-26 121.3 77 79.2
Phvul.001G002300 Phaseolus vulgaris HOM05D007648 ORTHO05D009613 7.8e-26 120.2 77 77.9
Ciclev10003012m.g Citrus clementina HOM05D007648 ORTHO05D009613 1.0e-25 119.8 81 75.3
Atru.chr13.217 Acer truncatum HOM05D007648 ORTHO05D009613 1.7e-25 119.0 80 77.5
BraA08t32933Z Brassica rapa HOM05D007648 ORTHO05D009613 1.7e-25 119.0 81 72.8
Lsat_1_v5_gn_5_1580 Lactuca sativa HOM05D007648 ORTHO05D009613 1.7e-25 119.0 81 72.8
Lalb_Chr19g0131601 Lupinus albus HOM05D007648 ORTHO05D009613 1.7e-25 119.0 77 76.6
AL2G36100 Arabidopsis lyrata HOM05D007648 ORTHO05D009613 2.3e-25 118.6 77 75.3
CiPaw.07G143700 Carya illinoinensis HOM05D007648 ORTHO05D009613 2.3e-25 118.6 81 74.1
Medtr1g026100 Medicago truncatula HOM05D007648 ORTHO05D009613 2.3e-25 118.6 77 76.6
TAR625G0376 Trochodendron aralioides HOM05D007648 ORTHO05D009613 3.0e-25 118.2 81 74.1
Glyma.17G261200 Glycine max HOM05D007648 ORTHO05D009613 5.0e-25 117.5 77 74.0
Haze_22702 Corylus avellana HOM05D007648 ORTHO05D009613 6.6e-25 117.1 80 76.2
ECA238G3742 Erigeron canadensis HOM05D000002 ORTHO05D000001 6.6e-25 117.1 72 80.6
A08p09340 Brassica napus HOM05D007648 ORTHO05D009613 8.6e-25 116.7 81 71.6
BolC8t48002H Brassica oleracea HOM05D007648 ORTHO05D009613 8.6e-25 116.7 81 71.6
Manes.05G142600 Manihot esculenta HOM05D007648 ORTHO05D009613 8.6e-25 116.7 81 74.1
HanXRQChr06g0185111 Helianthus annuus HOM05D007648 ORTHO05D009613 1.1e-24 116.3 80 73.8
Aa31LG4G6180 Aethionema arabicum HOM05D007648 ORTHO05D009613 1.5e-24 115.9 80 72.5
Hund05152 Selenicereus undatus HOM05D000399 ORTHO05D000304 1.5e-24 115.9 80 73.8
THA.LOC104811443 Tarenaya hassleriana HOM05D007648 ORTHO05D009613 1.5e-24 115.9 81 70.4
VMungo0647G0751 Vigna mungo HOM05D007648 ORTHO05D009613 1.9e-24 115.5 75 77.3
Actinidia29767 Actinidia chinensis HOM05D007648 ORTHO05D009613 2.5e-24 115.2 81 74.1
BcaC07g37632 Brassica carinata HOM05D007648 ORTHO05D009613 2.5e-24 115.2 81 70.4
CSS0030217 Camellia sinensis var. sinensis HOM05D007648 ORTHO05D009613 2.5e-24 115.2 81 74.1
TWI12G0541 Tripterygium wilfordii HOM05D007648 ORTHO05D009613 2.5e-24 115.2 81 69.1
BcaB07g30075 Brassica carinata HOM05D007648 ORTHO05D009613 3.3e-24 114.8 81 70.4
Cc10_g01140 Coffea canephora HOM05D007648 ORTHO05D009613 4.3e-24 114.4 80 71.2
COL.COLO4_26084 Corchorus olitorius HOM05D007648 ORTHO05D009613 5.6e-24 114.0 81 72.8
CsaV3_3G046120 Cucumis sativus L. HOM05D007648 ORTHO05D009613 5.6e-24 114.0 81 70.4
CAN.G22.4 Capsicum annuum HOM05D007648 ORTHO05D009613 7.3e-24 113.6 79 69.6
MELO3C003728.2 Cucumis melo HOM05D007648 ORTHO05D009613 7.3e-24 113.6 81 69.1
PGSC0003DMG400023820 Solanum tuberosum HOM05D007648 ORTHO05D009613 7.3e-24 113.6 79 69.6
Thecc.08G051700 Theobroma cacao HOM05D007648 ORTHO05D009613 7.3e-24 113.6 81 72.8
Duzib093G2040 Durio zibethinus HOM05D007648 ORTHO05D009613 1.2e-23 112.8 81 72.8
Eucgr.F03708 Eucalyptus grandis HOM05D007648 ORTHO05D009613 1.6e-23 112.5 81 72.8
Sopen06g017690 Solanum pennellii HOM05D007648 ORTHO05D009613 1.6e-23 112.5 79 68.4
DCAR_021446 Daucus carota HOM05D007648 ORTHO05D009613 2.1e-23 112.1 81 66.7
EL10Ac1g02083 Beta vulgaris HOM05D000399 ORTHO05D000304 6.2e-23 110.5 80 71.2
Rhsim07G0248300 Rhododendron simsii HOM05D007648 ORTHO05D009613 6.2e-23 110.5 81 70.4
Sc02g0008880 Simmondsia chinensis HOM05D007648 ORTHO05D009613 1.4e-22 109.4 81 67.9
vmacro17151 Vaccinium macrocarpon HOM05D007648 ORTHO05D009613 1.4e-22 109.4 81 69.1
Gohir.D01G035600 Gossypium hirsutum HOM05D007648 ORTHO05D009613 1.8e-22 109.0 77 72.7
Gorai.002G043700 Gossypium raimondii HOM05D007648 ORTHO05D009613 2.3e-22 108.6 77 72.7
Sc02g0008840 Simmondsia chinensis HOM05D007648 ORTHO05D009613 2.3e-22 108.6 81 67.9
Aqoxy5G01099 Aquilegia oxysepala HOM05D007648 ORTHO05D009613 3.1e-22 108.2 77 70.1
SalBow7G1731 Salvia bowleyana HOM05D007648 ORTHO05D009613 3.1e-22 108.2 80 67.5
Gohir.A01G044700 Gossypium hirsutum HOM05D007648 ORTHO05D009613 4.0e-22 107.8 77 71.4
Ah.00g000660 Amaranthus hybridus HOM05D007648 ORTHO05D009613 5.2e-22 107.5 80 68.8
Rhsim07G0248100 Rhododendron simsii HOM05D007648 ORTHO05D009613 5.2e-22 107.5 79 69.6
BraA02t08664Z Brassica rapa HOM05D007648 ORTHO05D009613 6.8e-22 107.1 74 70.3
Os02g0667000 Oryza sativa ssp. japonica HOM05D007648 ORTHO05D009613 8.9e-22 106.7 81 67.9
Migut.C00899 Erythranthe guttata HOM05D007648 ORTHO05D009613 1.5e-21 105.9 76 68.4
HPP92_003481 Vanilla planifolia HOM05D007648 ORTHO05D009613 5.8e-21 104.0 81 66.7
CAN.G22.7 Capsicum annuum HOM05D007648 ORTHO05D009613 9.9e-21 103.2 78 65.4
PSO210G3155 Papaver somniferum HOM05D007648 ORTHO05D009613 9.9e-21 103.2 74 70.3
HPP92_026879 Vanilla planifolia HOM05D007648 ORTHO05D009613 6.4e-20 100.5 81 64.2
BolC2t11627H Brassica oleracea HOM05D007648 ORTHO05D009613 1.9e-19 99.0 81 64.2
CDE04G2628 Ceratophyllum demersum HOM05D007648 ORTHO05D009613 7.1e-19 97.1 76 68.4
MBI05_g46751_MAGBIO Magnolia biondii HOM05D007648 ORTHO05D009613 7.8e-18 93.6 73 64.4
Nitab4.5_0004193g0030 Nicotiana tabacum HOM05D000998 ORTHO05D000806 1.0e-17 93.2 66 69.7
Peaxi162Scf00394g00212 Petunia axillaris HOM05D007648 ORTHO05D009613 3.9e-17 91.3 67 67.2
Mapoly0088s0028 Marchantia polymorpha HOM05D007648 ORTHO05D009613 2.5e-16 88.6 80 57.5
C02p55750 Brassica napus HOM05D007648 ORTHO05D009613 1.2e-15 86.3 70 62.9
AUR62036713 Chenopodium quinoa HOM05D000399 ORTHO05D000304 1.6e-15 85.9 134 42.5
Nitab4.5_0000716g0050 Nicotiana tabacum HOM05D000998 ORTHO05D000806 1.6e-15 85.9 61 68.9
A02p36690 Brassica napus HOM05D007648 ORTHO05D009613 2.1e-15 85.5 59 67.8
Pp3c8_20950 Physcomitrium patens HOM05D007648 ORTHO05D009613 3.4e-13 78.2 81 55.6
AagrBONN_evm.TU.Sc2ySwM_344.3278 Anthoceros agrestis HOM05D007648 ORTHO05D009613 4.4e-13 77.8 78 51.3
AUR62013884 Chenopodium quinoa HOM05D007648 ORTHO05D009613 5.4e-11 70.9 44 77.3
unitig_748.g7721 Utricularia gibba HOM05D007648 ORTHO05D009613 1.3e-09 66.2 45 64.4
Os03g0159800 Oryza sativa ssp. japonica HOM05D007648 ORTHO05D009613 1.1e-08 63.2 45 64.4
SalBow1G6040 Salvia bowleyana HOM05D038733 ORTHO05D009613 2.5e-08 62.0 44 63.6
SalBow7G3523 Salvia bowleyana HOM05D038733 ORTHO05D009613 2.5e-08 62.0 44 63.6
MCO07G444 Micromonas commoda HOM05D007648 ORTHO05D009613 3.3e-08 61.6 72 47.2
Actinidia37950 Actinidia chinensis HOM05D007648 ORTHO05D009613 2.8e-07 58.5 38 71.1
BcaC03g17585 Brassica carinata HOM05D007648 ORTHO05D009613 1.1e-06 56.6 80 46.2


User provided reference genes

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