Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0303641 Rosa chinensis HOM05D006402 ORTHO05D008099 2.9e-74 282.0 158 100.0
FAN27G3062 Fragaria x ananassa HOM05D006402 ORTHO05D008099 3.6e-64 248.4 156 92.3
FAN20G3208 Fragaria x ananassa HOM05D006402 ORTHO05D008099 2.3e-63 245.7 156 92.9
FvH4_2g37980 Fragaria vesca HOM05D006402 ORTHO05D008099 3.9e-63 245.0 157 91.1
Prupe.1G359800 Prunus persica HOM05D006402 ORTHO05D008099 1.2e-59 233.4 155 81.9
MD08G1008000 Malus domestica HOM05D006402 ORTHO05D008099 1.6e-56 223.0 155 78.7
CiPaw.08G069100 Carya illinoinensis HOM05D006402 ORTHO05D008099 6.7e-55 217.6 157 72.6
TWI14G1330 Tripterygium wilfordii HOM05D006402 ORTHO05D008099 2.7e-51 205.7 158 77.2
Haze_22699 Corylus avellana HOM05D006402 ORTHO05D008099 4.5e-51 204.9 161 69.6
Manes.05G142900 Manihot esculenta HOM05D006402 ORTHO05D008099 1.7e-50 203.0 158 68.4
Cfa014004 Carpinus fangiana HOM05D006402 ORTHO05D008099 5.5e-49 198.0 161 67.1
Atru.chr13.220 Acer truncatum HOM05D006402 ORTHO05D008099 9.4e-49 197.2 153 76.5
Thecc.08G051300 Theobroma cacao HOM05D006402 ORTHO05D008099 6.1e-48 194.5 153 74.5
Sabra02G0013300 Salix brachista HOM05D006402 ORTHO05D008099 8.0e-48 194.1 156 64.7
AL2G36080 Arabidopsis lyrata HOM05D006402 ORTHO05D008099 3.0e-47 192.2 160 68.1
Potri.002G016600 Populus trichocarpa HOM05D006402 ORTHO05D008099 6.8e-47 191.0 158 63.9
arahy.Tifrunner.gnm1.ann1.KWDT0T Arachis hypogaea HOM05D006402 ORTHO05D008099 8.8e-47 190.7 154 64.3
Cpa.g.sc81.101 Carica papaya HOM05D006402 ORTHO05D008099 8.8e-47 190.7 158 68.4
arahy.Tifrunner.gnm1.ann1.R93WT9 Arachis hypogaea HOM05D006402 ORTHO05D008099 1.2e-46 190.3 154 66.9
PGR142G1353 Punica granatum HOM05D006402 ORTHO05D008099 1.5e-46 189.9 161 65.2
Lj4C17T8 Lonicera japonica HOM05D006402 ORTHO05D008099 2.0e-46 189.5 151 62.9
QL02p012927 Quercus lobata HOM05D006402 ORTHO05D008099 2.0e-46 189.5 161 64.6
Aa31LG4G6170 Aethionema arabicum HOM05D006402 ORTHO05D008099 2.6e-46 189.1 155 63.9
BcaC08g47098 Brassica carinata HOM05D006402 ORTHO05D008099 3.4e-46 188.7 153 66.0
Duzib093G1673 Durio zibethinus HOM05D006402 ORTHO05D008099 3.4e-46 188.7 132 74.2
THA.LOC104811442 Tarenaya hassleriana HOM05D006402 ORTHO05D008099 3.4e-46 188.7 159 64.2
COL.COLO4_26087 Corchorus olitorius HOM05D006402 ORTHO05D008099 4.4e-46 188.3 127 77.2
Gohir.A06G001000 Gossypium hirsutum HOM05D006402 ORTHO05D008099 4.4e-46 188.3 134 71.6
Cc10_g01150 Coffea canephora HOM05D006402 ORTHO05D008099 9.8e-46 187.2 150 66.0
Nitab4.5_0003030g0100 Nicotiana tabacum HOM05D006402 ORTHO05D008099 9.8e-46 187.2 151 64.2
A07p41620 Brassica napus HOM05D006402 ORTHO05D008099 2.8e-45 185.7 154 64.9
BraA07t31691Z Brassica rapa HOM05D006402 ORTHO05D008099 2.8e-45 185.7 154 64.9
CANSAT25G3089 Cannabis sativa HOM05D006402 ORTHO05D008099 2.8e-45 185.7 154 64.9
Sp5g31180 Schrenkiella parvula HOM05D006402 ORTHO05D008099 2.8e-45 185.7 159 64.8
Gorai.010G001200 Gossypium raimondii HOM05D006402 ORTHO05D008099 6.3e-45 184.5 134 71.6
MELO3C011341.2 Cucumis melo HOM05D006402 ORTHO05D008099 8.3e-45 184.1 129 73.6
Sopen04g035580 Solanum pennellii HOM05D006402 ORTHO05D008099 8.3e-45 184.1 152 61.8
PGSC0003DMG400009954 Solanum tuberosum HOM05D006402 ORTHO05D008099 8.3e-45 184.1 152 61.8
AT1G76060 Arabidopsis thaliana HOM05D006402 ORTHO05D008099 1.4e-44 183.3 159 64.2
CARHR069600 Cardamine hirsuta HOM05D006402 ORTHO05D008099 1.4e-44 183.3 162 62.3
A02p20400 Brassica napus HOM05D006402 ORTHO05D008099 1.8e-44 183.0 152 65.1
CAN.G311.71 Capsicum annuum HOM05D006402 ORTHO05D008099 1.8e-44 183.0 152 61.2
Rhsim07G0248600 Rhododendron simsii HOM05D006402 ORTHO05D008099 1.8e-44 183.0 125 74.4
Ciclev10002722m.g Citrus clementina HOM05D006402 ORTHO05D008099 2.4e-44 182.6 157 65.6
Thhalv10019271m.g Eutrema salsugineum HOM05D006402 ORTHO05D008099 2.4e-44 182.6 154 64.3
Peaxi162Scf00174g00075 Petunia axillaris HOM05D006402 ORTHO05D008099 3.1e-44 182.2 125 71.2
Solyc04g081940.3 Solanum lycopersicum HOM05D006402 ORTHO05D008099 3.1e-44 182.2 152 61.2
CsaV3_2G024420 Cucumis sativus L. HOM05D006402 ORTHO05D008099 5.4e-44 181.4 129 85.3
C06p50000 Brassica napus HOM05D006402 ORTHO05D008099 7.0e-44 181.0 154 63.6
Carub.0002s2294 Capsella rubella HOM05D006402 ORTHO05D008099 7.0e-44 181.0 160 63.8
Sc02g0008870 Simmondsia chinensis HOM05D006402 ORTHO05D008099 7.0e-44 181.0 134 70.9
Gorai.006G031900 Gossypium raimondii HOM05D006402 ORTHO05D008099 9.1e-44 180.6 127 76.4
BolC6t40039H Brassica oleracea HOM05D006402 ORTHO05D008099 1.2e-43 180.3 154 63.6
SalBow7G2419 Salvia bowleyana HOM05D006402 ORTHO05D008099 1.2e-43 180.3 132 69.7
Sed0012705 Sechium edule HOM05D006402 ORTHO05D008099 1.2e-43 180.3 129 72.1
CSS0047659 Camellia sinensis var. sinensis HOM05D006402 ORTHO05D008099 1.6e-43 179.9 154 63.6
EL10Ac1g02084 Beta vulgaris HOM05D006402 ORTHO05D008099 2.0e-43 179.5 155 60.6
Gohir.A09G028000 Gossypium hirsutum HOM05D006402 ORTHO05D008099 2.0e-43 179.5 127 74.0
SalBow6G2408 Salvia bowleyana HOM05D006402 ORTHO05D008099 2.0e-43 179.5 129 71.3
TAR628G1405 Trochodendron aralioides HOM05D006402 ORTHO05D008099 2.0e-43 179.5 151 61.6
AUR62016156 Chenopodium quinoa HOM05D006402 ORTHO05D008099 3.5e-43 178.7 141 65.2
ClCG08G014030 Citrullus lanatus HOM05D006402 ORTHO05D008099 3.5e-43 178.7 123 72.4
Dinv18455 Davidia involucrata HOM05D006402 ORTHO05D008099 3.5e-43 178.7 130 73.1
Eucgr.F01698 Eucalyptus grandis HOM05D006402 ORTHO05D008099 3.5e-43 178.7 157 70.7
Sopen02g030620 Solanum pennellii HOM05D006402 ORTHO05D008099 4.5e-43 178.3 152 60.5
Aqoxy6G00455 Aquilegia oxysepala HOM05D006402 ORTHO05D008099 1.0e-42 177.2 124 70.2
Hma1.2p1_0023F.1_g015780 Hydrangea macrophylla HOM05D006402 ORTHO05D008099 1.3e-42 176.8 125 72.0
PGSC0003DMG400012651 Solanum tuberosum HOM05D006402 ORTHO05D008099 1.3e-42 176.8 124 69.4
Nn6g34597 Nelumbo nucifera HOM05D006402 ORTHO05D008099 2.2e-42 176.0 132 68.9
Sed0017306 Sechium edule HOM05D006402 ORTHO05D008099 2.2e-42 176.0 126 71.4
Solyc02g085937.1 Solanum lycopersicum HOM05D006402 ORTHO05D008099 2.2e-42 176.0 123 69.1
Sc02g0008830 Simmondsia chinensis HOM05D006402 ORTHO05D008099 2.9e-42 175.6 129 74.4
SGA_v2.0_scaffold292G47394 Striga asiatica HOM05D006402 ORTHO05D008099 5.0e-42 174.9 136 65.4
HanXRQChr14g0429471 Helianthus annuus HOM05D006402 ORTHO05D008099 6.5e-42 174.5 126 69.0
AUR62036301 Chenopodium quinoa HOM05D006402 ORTHO05D008099 1.5e-41 173.3 141 63.8
Psat6g001160 Pisum sativum HOM05D006402 ORTHO05D008099 2.5e-41 172.6 129 76.7
Migut.C00897 Erythranthe guttata HOM05D006402 ORTHO05D008099 3.2e-41 172.2 154 61.7
MSTRG.1145 Avicennia marina HOM05D006402 ORTHO05D008099 4.2e-41 171.8 154 61.7
unitig_32.g11245 Utricularia gibba HOM05D006402 ORTHO05D008099 4.2e-41 171.8 127 69.3
VMungo0647G0728 Vigna mungo HOM05D006402 ORTHO05D008099 7.2e-41 171.0 149 61.7
Ca_13483_v3 Cicer arietinum L. HOM05D006402 ORTHO05D008099 2.1e-40 169.5 124 75.8
DCAR_007723 Daucus carota HOM05D006402 ORTHO05D008099 2.1e-40 169.5 129 63.6
Lalb_Chr23g0266011 Lupinus albus HOM05D006402 ORTHO05D008099 2.1e-40 169.5 151 56.3
ECA238G1428 Erigeron canadensis HOM05D006402 ORTHO05D008099 2.7e-40 169.1 124 71.0
Lj5g0026723 Lotus japonicus HOM05D006402 ORTHO05D008099 2.7e-40 169.1 158 62.7
PSO675G2459 Papaver somniferum HOM05D006402 ORTHO05D008099 3.6e-40 168.7 143 59.4
Gohir.D09G027401 Gossypium hirsutum HOM05D006402 ORTHO05D008099 1.4e-39 166.8 127 71.7
BcaC03g15641 Brassica carinata HOM05D006402 ORTHO05D008099 1.8e-39 166.4 156 60.3
TPR.G26406 Trifolium pratense HOM05D006402 ORTHO05D008099 2.3e-39 166.0 125 76.0
CDE05G2406 Ceratophyllum demersum HOM05D000228 ORTHO05D001122 5.2e-39 164.9 147 61.9
Glyma.17G261100 Glycine max HOM05D006402 ORTHO05D008099 7.5e-38 161.0 145 56.6
Medtr1g026078 Medicago truncatula HOM05D006402 ORTHO05D008099 9.8e-38 160.6 125 75.2
Phvul.001G003000 Phaseolus vulgaris HOM05D006402 ORTHO05D008099 9.8e-38 160.6 120 68.3
Lsat_1_v5_gn_2_6761 Lactuca sativa HOM05D006402 ORTHO05D008099 1.3e-37 160.2 125 76.0
SHI08020 Sapria himalayana HOM05D006402 ORTHO05D008099 3.7e-37 158.7 151 56.3
HPP92_013449 Vanilla planifolia HOM05D006402 ORTHO05D008099 3.7e-37 158.7 130 63.1
MBI03_g11314_MAGBIO Magnolia biondii HOM05D006402 ORTHO05D008099 6.3e-37 157.9 148 56.8
PSO541G5119 Papaver somniferum HOM05D006402 ORTHO05D008099 6.3e-37 157.9 121 65.3
Glyma.09G042800 Glycine max HOM05D006402 ORTHO05D008099 8.3e-37 157.5 145 55.9
Actinidia29765 Actinidia chinensis HOM05D006402 ORTHO05D008099 2.4e-36 156.0 155 60.6
ATR0580G246 Amborella trichopoda HOM05D006402 ORTHO05D008099 4.1e-36 155.2 133 66.9
ATR0680G026 Amborella trichopoda HOM05D006402 ORTHO05D008099 1.1e-33 147.1 133 60.9
BolC2t09355H Brassica oleracea HOM05D006402 ORTHO05D008099 3.3e-33 145.6 156 54.5
C02p33500 Brassica napus HOM05D006402 ORTHO05D008099 4.3e-33 145.2 156 54.5
Zm00001eb002920 Zea mays HOM05D006402 ORTHO05D008099 4.3e-33 145.2 144 56.2
Os03g0136600 Oryza sativa ssp. japonica HOM05D006402 ORTHO05D008099 1.6e-32 143.3 153 53.6
SEGI_22650 Sequoiadendron giganteum HOM05D006402 ORTHO05D008099 3.0e-31 139.0 124 54.8
BraA02t07072Z Brassica rapa HOM05D006402 ORTHO05D008099 5.7e-30 134.8 85 81.2
Pp3c14_25160 Physcomitrium patens HOM05D006402 ORTHO05D008099 8.3e-29 131.0 122 53.3
BcaC08g47099 Brassica carinata HOM05D006402 ORTHO05D008099 6.2e-24 114.8 103 59.2
AagrBONN_evm.TU.Sc2ySwM_228.4698 Anthoceros agrestis HOM05D006402 ORTHO05D008099 5.2e-23 111.7 120 50.0
SMO358G0213 Selaginella moellendorffii HOM05D006402 ORTHO05D008099 2.6e-22 109.4 121 43.8
Mapoly0186s0006 Marchantia polymorpha HOM05D006402 ORTHO05D008099 6.4e-21 104.8 124 45.2
BcaC08g47297 Brassica carinata HOM05D006402 ORTHO05D008099 1.1e-20 104.0 152 43.4
QL08p014343 Quercus lobata HOM05D006402 ORTHO05D008099 1.1e-20 104.0 130 50.0
MD15G1006900 Malus domestica HOM05D006402 ORTHO05D008099 3.5e-19 99.0 90 64.4
CBR_g51533 Chara braunii HOM05D006402 ORTHO05D008099 6.0e-19 98.2 117 46.2
PRCOL_00001167 Prasinoderma coloniale HOM05D006402 ORTHO05D008099 7.8e-19 97.8 86 58.1
Eucgr.F01697 Eucalyptus grandis HOM05D006402 ORTHO05D008099 1.1e-17 94.0 80 60.0
MCO02G370 Micromonas commoda HOM05D006402 ORTHO05D008099 1.1e-15 87.4 78 51.3
Cre01.g028150 Chlamydomonas reinhardtii HOM05D006402 ORTHO05D008099 6.8e-15 84.7 76 50.0
Sed0026898 Sechium edule HOM05D006402 ORTHO05D008099 1.6e-11 73.6 121 42.1
Glyma.14G222200 Glycine max HOM05D006402 ORTHO05D008099 1.4e-07 60.5 84 46.4
BcaC08g47102 Brassica carinata HOM05D006402 ORTHO05D008099 3.4e-06 55.8 53 56.6


User provided reference genes

Program Settings