Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0303391 Rosa chinensis HOM05D005476 ORTHO05D006886 4.9e-27 123.6 59 100.0
RcHm_v2.0_Chr6g0276161 Rosa chinensis HOM05D005476 ORTHO05D006886 1.4e-26 122.1 58 98.3
RcHm_v2.0_Chr5g0069451 Rosa chinensis HOM05D005476 ORTHO05D006886 1.6e-22 108.6 58 91.4
RcHm_v2.0_Chr7g0201761 Rosa chinensis HOM05D005476 ORTHO05D006886 4.1e-21 104.0 58 84.5
FAN16G3667 Fragaria x ananassa HOM05D005476 ORTHO05D006886 2.2e-19 98.2 59 84.7
FAN25G3001 Fragaria x ananassa HOM05D005476 ORTHO05D006886 2.2e-19 98.2 59 84.7
FAN21G0574 Fragaria x ananassa HOM05D005476 ORTHO05D006886 2.5e-18 94.7 59 83.1
FvH4_3g38550 Fragaria vesca HOM05D005476 ORTHO05D006886 3.2e-18 94.4 59 81.4
FAN11G1091 Fragaria x ananassa HOM05D005476 ORTHO05D006886 3.2e-18 94.4 59 81.4
Prupe.6G057500 Prunus persica HOM05D005476 ORTHO05D006886 8.8e-16 86.3 58 74.1
MD11G1074700 Malus domestica HOM05D005476 ORTHO05D006886 1.7e-14 82.0 58 74.1
MD03G1070700 Malus domestica HOM05D005476 ORTHO05D006886 3.7e-14 80.9 58 74.1
Sopen06g033350 Solanum pennellii HOM05D005476 ORTHO05D006886 4.5e-12 73.9 50 68.0
Haze_24322 Corylus avellana HOM05D005476 ORTHO05D006886 1.0e-11 72.8 62 62.9
Solyc06g076950.3 Solanum lycopersicum HOM05D005476 ORTHO05D006886 1.3e-11 72.4 50 66.0
PGSC0003DMG400030356 Solanum tuberosum HOM05D005476 ORTHO05D006886 1.7e-11 72.0 50 66.0
CAN.G394.127 Capsicum annuum HOM05D005476 ORTHO05D006886 2.2e-11 71.6 49 67.3
Dinv28640 Davidia involucrata HOM05D005476 ORTHO05D006886 2.2e-11 71.6 58 62.1
TWI31G0160 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 2.9e-11 71.2 58 63.8
CiPaw.14G059600 Carya illinoinensis HOM05D005476 ORTHO05D006886 3.8e-11 70.9 53 67.9
Nitab4.5_0001806g0030 Nicotiana tabacum HOM05D005476 ORTHO05D006886 5.0e-11 70.5 50 64.0
Cfa011695 Carpinus fangiana HOM05D005476 ORTHO05D006886 6.5e-11 70.1 62 62.9
BcaC04g19834 Brassica carinata HOM05D005476 ORTHO05D006886 8.5e-11 69.7 52 65.4
C09p50810 Brassica napus HOM05D005476 ORTHO05D006886 8.5e-11 69.7 52 65.4
BolC9t57941H Brassica oleracea HOM05D005476 ORTHO05D006886 8.5e-11 69.7 52 65.4
TWI79G0899 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 8.5e-11 69.7 45 75.6
CiPaw.13G077600 Carya illinoinensis HOM05D005476 ORTHO05D006886 1.1e-10 69.3 53 62.3
Nitab4.5_0000010g0290 Nicotiana tabacum HOM05D005476 ORTHO05D006886 1.4e-10 68.9 50 62.0
BraA10t43679Z Brassica rapa HOM05D005476 ORTHO05D006886 1.9e-10 68.6 53 67.9
CANSAT25G3760 Cannabis sativa HOM05D005476 ORTHO05D006886 2.5e-10 68.2 58 62.1
Dinv14437 Davidia involucrata HOM05D005476 ORTHO05D006886 2.5e-10 68.2 46 71.7
Peaxi162Scf00540g00426 Petunia axillaris HOM05D005476 ORTHO05D006886 3.2e-10 67.8 50 62.0
Duzib170G1024 Durio zibethinus HOM05D005476 ORTHO05D006886 4.2e-10 67.4 55 58.2
Ciclev10028681m.g Citrus clementina HOM05D005476 ORTHO05D006886 9.4e-10 66.2 48 66.7
Migut.N00789 Erythranthe guttata HOM05D005476 ORTHO05D006886 9.4e-10 66.2 58 56.9
ClCG03G000760 Citrullus lanatus HOM05D005476 ORTHO05D006886 1.2e-09 65.9 52 59.6
CsaV3_1G036180 Cucumis sativus L. HOM05D005476 ORTHO05D006886 1.2e-09 65.9 52 59.6
Carub.0008s1935 Capsella rubella HOM05D005476 ORTHO05D006886 1.6e-09 65.5 60 58.3
MELO3C020550.2 Cucumis melo HOM05D005476 ORTHO05D006886 1.6e-09 65.5 48 64.6
Psat2g058600 Pisum sativum HOM05D005476 ORTHO05D006886 1.6e-09 65.5 47 61.7
Aa31LG11G490 Aethionema arabicum HOM05D005476 ORTHO05D006886 2.1e-09 65.1 48 68.8
Sed0016907 Sechium edule HOM05D005476 ORTHO05D006886 2.1e-09 65.1 44 70.5
Potri.009G046200 Populus trichocarpa HOM05D005476 ORTHO05D006886 2.7e-09 64.7 52 61.5
SalBow5G1841 Salvia bowleyana HOM05D005476 ORTHO05D006886 2.7e-09 64.7 47 63.8
TPR.G5779 Trifolium pratense HOM05D005476 ORTHO05D006886 2.7e-09 64.7 47 59.6
Ah.08g221180 Amaranthus hybridus HOM05D005476 ORTHO05D006886 3.6e-09 64.3 41 68.3
AUR62020130 Chenopodium quinoa HOM05D005476 ORTHO05D006886 3.6e-09 64.3 42 66.7
Nn2g13708 Nelumbo nucifera HOM05D005476 ORTHO05D006886 3.6e-09 64.3 52 57.7
SalBow8G4850 Salvia bowleyana HOM05D005476 ORTHO05D006886 3.6e-09 64.3 47 61.7
Thhalv10014005m.g Eutrema salsugineum HOM05D005476 ORTHO05D006886 4.7e-09 63.9 45 71.1
unitig_22.g5210 Utricularia gibba HOM05D005476 ORTHO05D006886 4.7e-09 63.9 50 58.0
GSVIVG01024740001 Vitis vinifera HOM05D005476 ORTHO05D006886 4.7e-09 63.9 45 68.9
Atru.chr3.4220 Acer truncatum HOM05D005476 ORTHO05D006886 6.1e-09 63.5 43 69.8
A10p15540 Brassica napus HOM05D005476 ORTHO05D006886 6.1e-09 63.5 45 68.9
CARHR272640 Cardamine hirsuta HOM05D005476 ORTHO05D006886 6.1e-09 63.5 48 66.7
ECA247G2000 Erigeron canadensis HOM05D005476 ORTHO05D006886 6.1e-09 63.5 58 51.7
QL01p038276 Quercus lobata HOM05D005476 ORTHO05D006886 6.1e-09 63.5 51 60.8
SalBow2G2575 Salvia bowleyana HOM05D005476 ORTHO05D006886 6.1e-09 63.5 47 61.7
AT5G58730 Arabidopsis thaliana HOM05D005476 ORTHO05D006886 7.9e-09 63.2 45 71.1
Ca_05598_v3 Cicer arietinum L. HOM05D005476 ORTHO05D006886 7.9e-09 63.2 46 60.9
DCAR_007375 Daucus carota HOM05D005476 ORTHO05D006886 7.9e-09 63.2 50 62.0
Duzib168G1303 Durio zibethinus HOM05D005476 ORTHO05D006886 7.9e-09 63.2 55 58.2
Potri.001G251500 Populus trichocarpa HOM05D005476 ORTHO05D006886 7.9e-09 63.2 45 71.1
Hund18848 Selenicereus undatus HOM05D005476 ORTHO05D006886 7.9e-09 63.2 45 62.2
AL1010U10010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 1.0e-08 62.8 45 71.1
AL8G35010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 1.0e-08 62.8 45 71.1
Eucgr.B02253 Eucalyptus grandis HOM05D005476 ORTHO05D006886 1.0e-08 62.8 48 58.3
SGA_v2.0_scaffold120G32912 Striga asiatica HOM05D005476 ORTHO05D006886 1.4e-08 62.4 47 59.6
unitig_8.g3687 Utricularia gibba HOM05D005476 ORTHO05D006886 1.4e-08 62.4 47 59.6
Lj1A137G45 Lonicera japonica HOM05D005476 ORTHO05D006886 1.8e-08 62.0 45 66.7
Sp6g20420 Schrenkiella parvula HOM05D005476 ORTHO05D006886 1.8e-08 62.0 45 68.9
VMungo0647G0678 Vigna mungo HOM05D005476 ORTHO05D006886 1.8e-08 62.0 53 56.6
Nn2g11493 Nelumbo nucifera HOM05D005476 ORTHO05D006886 2.3e-08 61.6 52 55.8
Thecc.09G301800 Theobroma cacao HOM05D005476 ORTHO05D006886 2.3e-08 61.6 55 54.5
Sabra09G0033300 Salix brachista HOM05D005476 ORTHO05D006886 3.0e-08 61.2 45 68.9
Aqoxy2G00901 Aquilegia oxysepala HOM05D005476 ORTHO05D006886 3.9e-08 60.8 45 57.8
Cc01_g14180 Coffea canephora HOM05D005476 ORTHO05D006886 3.9e-08 60.8 49 57.1
COL.COLO4_19157 Corchorus olitorius HOM05D005476 ORTHO05D006886 3.9e-08 60.8 58 55.2
Manes.02G119400 Manihot esculenta HOM05D005476 ORTHO05D006886 3.9e-08 60.8 54 53.7
MBI14_g42907_MAGBIO Magnolia biondii HOM05D005476 ORTHO05D006886 5.1e-08 60.5 47 59.6
Oeu013433.3 Olea europaea HOM05D005476 ORTHO05D006886 5.1e-08 60.5 44 63.6
PSO339G1712 Papaver somniferum HOM05D005476 ORTHO05D006886 5.1e-08 60.5 43 58.1
Sed0014418 Sechium edule HOM05D005476 ORTHO05D006886 5.1e-08 60.5 51 56.9
SGA_v2.0_scaffold146G36140 Striga asiatica HOM05D005476 ORTHO05D006886 5.1e-08 60.5 48 58.3
Cpa.g.sc415.4 Carica papaya HOM05D005476 ORTHO05D006886 6.7e-08 60.1 55 54.5
TAR633G0563 Trochodendron aralioides HOM05D005476 ORTHO05D006886 6.7e-08 60.1 45 62.2
Gohir.A09G090300 Gossypium hirsutum HOM05D005476 ORTHO05D006886 8.8e-08 59.7 42 66.7
Gohir.D09G090400 Gossypium hirsutum HOM05D005476 ORTHO05D006886 8.8e-08 59.7 42 66.7
Gorai.006G106700 Gossypium raimondii HOM05D005476 ORTHO05D006886 8.8e-08 59.7 42 66.7
Lsat_1_v5_gn_9_20101 Lactuca sativa HOM05D005476 ORTHO05D006886 8.8e-08 59.7 58 58.6
THA.LOC104810712 Tarenaya hassleriana HOM05D005476 ORTHO05D006886 8.8e-08 59.7 47 63.8
TAR636G1181 Trochodendron aralioides HOM05D005476 ORTHO05D006886 8.8e-08 59.7 45 60.0
LjContig00155g0002690 Lotus japonicus HOM05D005476 ORTHO05D006886 1.1e-07 59.3 49 53.1
PGR102G2402 Punica granatum HOM05D005476 ORTHO05D006886 1.1e-07 59.3 49 57.1
EL10Ac7g16167 Beta vulgaris HOM05D005476 ORTHO05D006886 1.5e-07 58.9 40 65.0
AUR62001646 Chenopodium quinoa HOM05D005476 ORTHO05D006886 1.5e-07 58.9 40 65.0
Medtr5g070350 Medicago truncatula HOM05D005476 ORTHO05D006886 2.0e-07 58.5 53 50.9
CSS0011477 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 2.6e-07 58.2 40 67.5
CSS0028478 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 2.6e-07 58.2 40 67.5
Phvul.008G261400 Phaseolus vulgaris HOM05D005476 ORTHO05D006886 2.6e-07 58.2 53 52.8
Rhsim13G0069500 Rhododendron simsii HOM05D005476 ORTHO05D006886 2.6e-07 58.2 45 60.0
Glyma.14G193500 Glycine max HOM05D005476 ORTHO05D006886 3.3e-07 57.8 47 57.4
Lalb_Chr17g0345081 Lupinus albus HOM05D005476 ORTHO05D006886 3.3e-07 57.8 43 58.1
PSO801G0319 Papaver somniferum HOM05D005476 ORTHO05D006886 4.4e-07 57.4 43 55.8
vmacro02961 Vaccinium macrocarpon HOM05D005476 ORTHO05D006886 4.4e-07 57.4 44 61.4
Glyma.02G226600 Glycine max HOM05D005476 ORTHO05D006886 7.4e-07 56.6 47 55.3
HanXRQChr04g0109161 Helianthus annuus HOM05D005476 ORTHO05D006886 7.4e-07 56.6 49 55.1
CDE02G0680 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 1.3e-06 55.8 38 63.2
SalBow8G2493 Salvia bowleyana HOM05D005476 ORTHO05D006886 1.3e-06 55.8 47 59.6
CDE04G1962 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 1.7e-06 55.5 38 63.2
SHI19142 Sapria himalayana HOM05D005476 ORTHO05D006886 3.7e-06 54.3 43 62.8
ATR0618G050 Amborella trichopoda HOM05D005476 ORTHO05D006886 4.8e-06 53.9 39 61.5
BolC4t22609H Brassica oleracea HOM05D005476 ORTHO05D032808 6.3e-06 53.5 57 52.6
Manes.01G161600 Manihot esculenta HOM05D005476 ORTHO05D006886 6.3e-06 53.5 45 55.6


User provided reference genes

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