Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0303321 Rosa chinensis HOM05D004095 ORTHO05D003197 9.8e-147 523.5 270 100.0
FvH4_2g38160 Fragaria vesca HOM05D004095 ORTHO05D003197 3.1e-108 395.6 270 79.3
FAN20G0678 Fragaria x ananassa HOM05D004095 ORTHO05D003197 6.9e-108 394.4 271 78.6
FAN27G1813 Fragaria x ananassa HOM05D004095 ORTHO05D003197 2.9e-106 389.0 271 77.5
FAN15G2156 Fragaria x ananassa HOM05D004095 ORTHO05D003197 8.7e-103 377.5 283 71.0
Prupe.1G362500 Prunus persica HOM05D004095 ORTHO05D003197 7.5e-38 161.8 315 40.3
Prupe.1G362800 Prunus persica HOM05D004095 ORTHO05D003197 4.3e-33 146.0 234 42.3
TWI12G1115 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 3.0e-26 123.2 334 35.0
CiPaw.07G146700 Carya illinoinensis HOM05D004095 ORTHO05D003197 9.5e-25 118.2 322 35.4
CSS0032179 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 4.7e-24 115.9 328 32.9
TWI36G1615 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 2.3e-23 113.6 218 36.7
CSS0006390 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 4.0e-23 112.8 327 31.8
CiPaw.08G067700 Carya illinoinensis HOM05D004095 ORTHO05D003197 4.9e-21 105.9 219 34.7
Hma1.2p1_0023F.1_g015650 Hydrangea macrophylla HOM05D004095 ORTHO05D003197 1.4e-20 104.4 231 33.8
Dinv31870 Davidia involucrata HOM05D004095 ORTHO05D003197 4.1e-20 102.8 338 32.2
Potri.002G019200 Populus trichocarpa HOM05D004095 ORTHO05D003197 4.1e-20 102.8 314 30.3
Ciclev10002009m.g Citrus clementina HOM05D004095 ORTHO05D003197 9.2e-20 101.7 318 31.8
Haze_22667 Corylus avellana HOM05D004095 ORTHO05D003197 1.6e-19 100.9 212 36.8
Duzib093G1456 Durio zibethinus HOM05D004095 ORTHO05D003197 2.1e-19 100.5 312 32.7
Gohir.D01G096700 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.7e-18 97.4 292 33.6
Gohir.A01G110100 Gossypium hirsutum HOM05D004095 ORTHO05D003197 3.9e-18 96.3 288 30.9
Gorai.002G122400 Gossypium raimondii HOM05D004095 ORTHO05D003197 8.6e-18 95.1 204 34.3
CAN.G311.49 Capsicum annuum HOM05D004095 ORTHO05D003197 1.1e-17 94.7 313 35.5
Cc10_g01420 Coffea canephora HOM05D004095 ORTHO05D003197 2.5e-17 93.6 322 32.6
Sabra02G0015500 Salix brachista HOM05D004095 ORTHO05D003197 2.1e-16 90.5 223 33.6
Gorai.009G193100 Gossypium raimondii HOM05D004095 ORTHO05D003197 3.6e-16 89.7 291 31.3
TAR376G0784 Trochodendron aralioides HOM05D004095 ORTHO05D003197 3.6e-16 89.7 339 28.9
arahy.Tifrunner.gnm1.ann1.I59WU7 Arachis hypogaea HOM05D004095 ORTHO05D003197 4.7e-16 89.4 306 32.7
Peaxi162Scf00860g00422 Petunia axillaris HOM05D004095 ORTHO05D003197 4.7e-16 89.4 310 33.9
Duzib041G0318 Durio zibethinus HOM05D004095 ORTHO05D003197 8.1e-16 88.6 298 33.9
Oeu061977.1 Olea europaea HOM05D004095 ORTHO05D003197 8.1e-16 88.6 347 30.5
Gohir.A05G185000 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.1e-15 88.2 299 28.8
Gohir.D05G187800 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.1e-15 88.2 299 29.1
Potri.005G242400 Populus trichocarpa HOM05D004095 ORTHO05D003197 1.1e-15 88.2 316 30.4
Manes.18G010907 Manihot esculenta HOM05D004095 ORTHO05D003197 1.8e-15 87.4 313 30.7
PGSC0003DMG400009946 Solanum tuberosum HOM05D004095 ORTHO05D003197 1.8e-15 87.4 318 34.0
arahy.Tifrunner.gnm1.ann1.VNIF6J Arachis hypogaea HOM05D004095 ORTHO05D003197 2.3e-15 87.0 312 32.7
PGSC0003DMG400029333 Solanum tuberosum HOM05D004095 ORTHO05D003197 4.0e-15 86.3 296 33.4
Thecc.08G047900 Theobroma cacao HOM05D004095 ORTHO05D003197 5.2e-15 85.9 305 33.8
Sabra05G0187500 Salix brachista HOM05D004095 ORTHO05D003197 6.8e-15 85.5 230 30.4
Sc15g0004790 Simmondsia chinensis HOM05D004095 ORTHO05D003197 6.8e-15 85.5 355 33.0
Lalb_Chr08g0246191 Lupinus albus HOM05D004095 ORTHO05D003197 8.9e-15 85.1 315 31.1
Lj4A21T58 Lonicera japonica HOM05D004095 ORTHO05D003197 1.5e-14 84.3 351 29.6
Lj4A799T84 Lonicera japonica HOM05D004095 ORTHO05D003197 1.5e-14 84.3 279 35.5
Solyc04g081730.3 Solanum lycopersicum HOM05D004095 ORTHO05D003197 2.6e-14 83.6 311 33.4
Sopen04g035350 Solanum pennellii HOM05D004095 ORTHO05D003197 2.6e-14 83.6 312 34.3
Cfa007004 Carpinus fangiana HOM05D004095 ORTHO05D003197 3.4e-14 83.2 337 27.3
PGR031G2559 Punica granatum HOM05D004095 ORTHO05D003197 3.4e-14 83.2 320 31.9
Oeu026642.1 Olea europaea HOM05D004095 ORTHO05D003197 5.8e-14 82.4 235 28.5
Duzib187G0006 Durio zibethinus HOM05D004095 ORTHO05D003197 7.6e-14 82.0 333 32.4
Nitab4.5_0006505g0050 Nicotiana tabacum HOM05D004095 ORTHO05D003197 7.6e-14 82.0 219 33.3
TAR381G0731 Trochodendron aralioides HOM05D004095 ORTHO05D003197 7.6e-14 82.0 314 32.2
COL.COLO4_22466 Corchorus olitorius HOM05D004095 ORTHO05D003197 1.7e-13 80.9 323 32.8
Cfa013982 Carpinus fangiana HOM05D004095 ORTHO05D003197 2.9e-13 80.1 302 28.5
MELO3C011353.2 Cucumis melo HOM05D004095 ORTHO05D003197 2.9e-13 80.1 338 32.8
QL02p012206 Quercus lobata HOM05D004095 ORTHO05D003197 2.9e-13 80.1 76 47.4
TAR628G1526 Trochodendron aralioides HOM05D004095 ORTHO05D003197 3.7e-13 79.7 237 32.9
MSTRG.1174 Avicennia marina HOM05D004095 ORTHO05D003197 4.9e-13 79.3 342 29.5
Nn6g31993 Nelumbo nucifera HOM05D004095 ORTHO05D003197 4.9e-13 79.3 330 30.3
Sed0017695 Sechium edule HOM05D004095 ORTHO05D003197 4.9e-13 79.3 226 31.0
Aqoxy6G02168 Aquilegia oxysepala HOM05D004095 ORTHO05D003197 8.4e-13 78.6 289 30.4
Aqoxy5G01820 Aquilegia oxysepala HOM05D004095 ORTHO05D003197 1.1e-12 78.2 216 29.2
Sed0007913 Sechium edule HOM05D004095 ORTHO05D003197 1.1e-12 78.2 313 29.7
PSO675G0587 Papaver somniferum HOM05D004095 ORTHO05D003197 2.4e-12 77.0 316 29.4
MSTRG.22345 Avicennia marina HOM05D004095 ORTHO05D003197 3.2e-12 76.6 315 31.1
ClCG08G014140 Citrullus lanatus HOM05D004095 ORTHO05D003197 3.2e-12 76.6 234 31.2
MSTRG.25264 Avicennia marina HOM05D004095 ORTHO05D003197 4.1e-12 76.3 359 30.6
SalBow7G2790 Salvia bowleyana HOM05D004095 ORTHO05D003197 7.1e-12 75.5 269 27.1
THA.LOC104809551 Tarenaya hassleriana HOM05D008819 ORTHO05D003197 7.1e-12 75.5 235 29.4
Duzib147G0922 Durio zibethinus HOM05D004095 ORTHO05D003197 1.2e-11 74.7 338 28.4
Eucgr.H00956 Eucalyptus grandis HOM05D066110 ORTHO05D003197 1.2e-11 74.7 337 31.5
Potri.005G242300 Populus trichocarpa HOM05D004095 ORTHO05D003197 1.2e-11 74.7 278 29.9
Atru.chr3.863_Atru.chr3.864 Acer truncatum HOM05D004095 ORTHO05D003197 2.1e-11 73.9 379 30.1
Oeu007365.1 Olea europaea HOM05D004095 ORTHO05D003197 2.7e-11 73.6 235 28.9
THA.LOC104813782 Tarenaya hassleriana HOM05D008819 ORTHO05D003197 2.7e-11 73.6 213 28.6
CsaV3_2G024280 Cucumis sativus L. HOM05D004095 ORTHO05D003197 7.8e-11 72.0 336 31.5
Gorai.003G007900 Gossypium raimondii HOM05D004095 ORTHO05D003197 1.3e-10 71.2 338 31.4
TAR625G0988 Trochodendron aralioides HOM05D004095 ORTHO05D003197 1.3e-10 71.2 171 33.3
Aa31LG7G4540 Aethionema arabicum HOM05D008819 ORTHO05D003197 1.7e-10 70.9 302 23.2
Lj5g0025072 Lotus japonicus HOM05D004095 ORTHO05D003197 1.7e-10 70.9 296 33.1
PSO170G2543 Papaver somniferum HOM05D004095 ORTHO05D003197 2.3e-10 70.5 235 27.7
SGA_v2.0_scaffold11G05941 Striga asiatica HOM05D004095 ORTHO05D003197 2.3e-10 70.5 294 30.3
CAN.G1517.6 Capsicum annuum HOM05D004095 ORTHO05D003197 3.0e-10 70.1 320 31.6
CANSAT25G2395 Cannabis sativa HOM05D004095 ORTHO05D003197 3.9e-10 69.7 92 40.2
Thecc.02G059700 Theobroma cacao HOM05D015147 ORTHO05D003197 3.9e-10 69.7 104 36.5
PSO541G2818 Papaver somniferum HOM05D004095 ORTHO05D003197 5.1e-10 69.3 318 28.6
Haze_03728 Corylus avellana HOM05D004095 ORTHO05D003197 1.1e-09 68.2 76 43.4
Gohir.D03G007700 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.1e-09 68.2 334 29.9
COL.COLO4_26117 Corchorus olitorius HOM05D004095 ORTHO05D003197 1.5e-09 67.8 226 28.8
Gohir.A02G172400 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.9e-09 67.4 335 29.9
Nn5g30782 Nelumbo nucifera HOM05D004095 ORTHO05D003197 4.3e-09 66.2 96 37.5
unitig_749.g13901 Utricularia gibba HOM05D004095 ORTHO05D003197 9.6e-09 65.1 306 26.5
Hund01666 Selenicereus undatus HOM05D004095 ORTHO05D003197 1.2e-08 64.7 359 29.0
Gorai.008G208400 Gossypium raimondii HOM05D004095 ORTHO05D003197 2.1e-08 63.9 79 40.5
Cpa.g.sc26.299 Carica papaya HOM05D004095 ORTHO05D003197 2.8e-08 63.5 107 32.7
Duzib264G0091 Durio zibethinus HOM05D004095 ORTHO05D003197 3.6e-08 63.2 336 26.8
Gohir.D12G193466 Gossypium hirsutum HOM05D004095 ORTHO05D003197 3.6e-08 63.2 76 40.8
vmacro07570 Vaccinium macrocarpon HOM05D004095 ORTHO05D003197 3.6e-08 63.2 114 35.1
PSO700G0117 Papaver somniferum HOM05D004095 ORTHO05D003197 4.7e-08 62.8 242 26.9
EL10Ac3g06641 Beta vulgaris HOM05D004095 ORTHO05D003197 6.2e-08 62.4 394 26.4
Gorai.008G131100 Gossypium raimondii HOM05D004095 ORTHO05D003197 8.1e-08 62.0 212 31.6
Eucgr.I02328 Eucalyptus grandis HOM05D004095 ORTHO05D003197 1.4e-07 61.2 322 26.4
AT1G20100 Arabidopsis thaliana HOM05D008819 ORTHO05D003197 1.8e-07 60.8 305 30.8
FvH4_6g14711 Fragaria vesca HOM05D051550 ORTHO05D045480 1.8e-07 60.8 70 47.1
FAN14G4482 Fragaria x ananassa HOM05D051550 ORTHO05D045480 1.8e-07 60.8 70 47.1
Ciclev10025767m.g Citrus clementina HOM05D004095 ORTHO05D003197 2.4e-07 60.5 74 41.9
BcaC06g36322 Brassica carinata HOM05D004095 ORTHO05D003197 3.1e-07 60.1 312 26.3
unitig_0.g2088 Utricularia gibba HOM05D004095 ORTHO05D003197 3.1e-07 60.1 88 36.4
BolC7t42868H Brassica oleracea HOM05D008819 ORTHO05D003197 4.0e-07 59.7 211 26.5
Medtr1g034990 Medicago truncatula HOM05D013708 ORTHO05D003197 4.0e-07 59.7 222 30.6
QL11p050200 Quercus lobata HOM05D004095 ORTHO05D003197 4.0e-07 59.7 331 29.3
AL2G35870 Arabidopsis lyrata HOM05D008819 ORTHO05D003197 5.2e-07 59.3 215 27.9
A07p03170 Brassica napus HOM05D004095 ORTHO05D003197 6.8e-07 58.9 306 25.2
Duzib052G0919 Durio zibethinus HOM05D015147 ORTHO05D003197 6.8e-07 58.9 76 36.8
AUR62041467 Chenopodium quinoa HOM05D004095 ORTHO05D003197 8.9e-07 58.5 263 27.4
BraA07t28113Z Brassica rapa HOM05D004095 ORTHO05D003197 1.2e-06 58.2 307 26.1
CANSAT11G2253 Cannabis sativa HOM05D004095 ORTHO05D003197 1.5e-06 57.8 111 32.4
Thhalv10019693m.g Eutrema salsugineum HOM05D008819 ORTHO05D003197 1.5e-06 57.8 227 25.6
CSS0036757 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 2.0e-06 57.4 85 40.0
CARHR069410 Cardamine hirsuta HOM05D008819 ORTHO05D003197 2.0e-06 57.4 205 28.8
MD02G1126500 Malus domestica HOM05D004095 ORTHO05D003197 2.0e-06 57.4 78 43.6
Carub.0003s3193 Capsella rubella HOM05D004095 ORTHO05D003197 2.6e-06 57.0 76 38.2
CARHR108180 Cardamine hirsuta HOM05D004095 ORTHO05D003197 2.6e-06 57.0 281 27.8
Ca_13423_v3 Cicer arietinum L. HOM05D013708 ORTHO05D003197 2.6e-06 57.0 306 29.1
Ca_13439_v3 Cicer arietinum L. HOM05D013708 ORTHO05D003197 2.6e-06 57.0 306 29.1
Peaxi162Scf00064g00737 Petunia axillaris HOM05D004095 ORTHO05D003197 3.4e-06 56.6 276 32.2
BcaC08g47079 Brassica carinata HOM05D008819 ORTHO05D003197 4.4e-06 56.2 222 26.1
Sp1g17870 Schrenkiella parvula HOM05D008819 ORTHO05D003197 4.4e-06 56.2 197 26.4
Lj1g0024400 Lotus japonicus HOM05D004095 ORTHO05D003197 5.8e-06 55.8 77 33.8
Carub.0001s1963 Capsella rubella HOM05D008819 ORTHO05D003197 7.6e-06 55.5 220 25.0
Migut.C00862 Erythranthe guttata HOM05D004095 ORTHO05D003197 7.6e-06 55.5 86 37.2
Migut.N03174 Erythranthe guttata HOM05D004095 ORTHO05D003197 7.6e-06 55.5 194 27.8
Lsat_1_v5_gn_8_29800 Lactuca sativa HOM05D004095 ORTHO05D003197 9.9e-06 55.1 131 45.0
Prupe.7G171900 Prunus persica HOM05D004095 ORTHO05D003197 9.9e-06 55.1 79 43.0
THA.LOC104804274 Tarenaya hassleriana HOM05D004095 ORTHO05D003197 9.9e-06 55.1 77 36.4


User provided reference genes

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