Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0303181 Rosa chinensis HOM05D007731 ORTHO05D008483 1.1e-125 453.4 235 100.0
FvH4_2g38210 Fragaria vesca HOM05D007731 ORTHO05D008483 1.8e-96 356.3 243 81.9
FAN15G0282 Fragaria x ananassa HOM05D007731 ORTHO05D008483 7.6e-95 350.9 243 80.7
FAN20G0947 Fragaria x ananassa HOM05D007731 ORTHO05D008483 2.2e-94 349.4 244 81.6
FAN27G0472 Fragaria x ananassa HOM05D007731 ORTHO05D008483 4.3e-90 335.1 245 79.6
Prupe.1G363100 Prunus persica HOM05D007731 ORTHO05D008483 4.2e-61 238.8 259 61.4
Potri.002G019700 Populus trichocarpa HOM05D007731 ORTHO05D008483 3.6e-44 182.6 227 53.3
QL02p012129 Quercus lobata HOM05D007731 ORTHO05D008483 2.3e-43 179.9 243 51.4
Thecc.08G047100 Theobroma cacao HOM05D007731 ORTHO05D008483 2.0e-42 176.8 253 50.6
Sabra02G0016000 Salix brachista HOM05D007731 ORTHO05D008483 1.3e-41 174.1 221 52.0
Duzib093G0569 Durio zibethinus HOM05D007731 ORTHO05D008483 6.3e-41 171.8 252 48.4
Manes.05G145300 Manihot esculenta HOM05D007731 ORTHO05D008483 1.8e-40 170.2 225 51.6
Manes.18G011966 Manihot esculenta HOM05D007731 ORTHO05D008483 3.1e-40 169.5 215 54.4
Potri.005G241800 Populus trichocarpa HOM05D007731 ORTHO05D008483 7.0e-40 168.3 231 49.8
Dinv39536 Davidia involucrata HOM05D007731 ORTHO05D008483 4.5e-39 165.6 169 58.0
COL.COLO4_26124 Corchorus olitorius HOM05D007731 ORTHO05D008483 1.4e-35 154.1 205 51.2
CiPaw.07G147300 Carya illinoinensis HOM05D007731 ORTHO05D008483 3.0e-35 152.9 247 45.3
CiPaw.08G067400 Carya illinoinensis HOM05D007731 ORTHO05D008483 5.2e-35 152.1 237 45.1
Cfa013976 Carpinus fangiana HOM05D007731 ORTHO05D008483 6.8e-35 151.8 242 45.5
Hma1.2p1_0733F.1_g210180 Hydrangea macrophylla HOM05D007731 ORTHO05D008483 1.2e-34 151.0 244 46.7
Sabra05G0187200 Salix brachista HOM05D007731 ORTHO05D008483 1.5e-34 150.6 242 45.5
TAR628G0423 Trochodendron aralioides HOM05D007731 ORTHO05D008483 5.7e-34 148.7 249 45.0
Gohir.A05G185300 Gossypium hirsutum HOM05D007731 ORTHO05D008483 2.8e-33 146.4 268 43.7
CANSAT25G3722 Cannabis sativa HOM05D007731 ORTHO05D008483 9.1e-32 141.4 216 48.1
Haze_22661 Corylus avellana HOM05D007731 ORTHO05D008483 1.6e-31 140.6 241 43.2
Gorai.009G193400 Gossypium raimondii HOM05D007731 ORTHO05D008483 1.6e-31 140.6 272 41.9
TAR376G0482 Trochodendron aralioides HOM05D007731 ORTHO05D008483 3.5e-31 139.4 242 44.6
Nn6g32002 Nelumbo nucifera HOM05D007731 ORTHO05D008483 5.9e-31 138.7 194 47.4
Gohir.D05G188100 Gossypium hirsutum HOM05D007731 ORTHO05D008483 3.8e-30 136.0 265 40.8
Ciclev10002425m.g Citrus clementina HOM05D007731 ORTHO05D008483 5.5e-29 132.1 245 43.3
Lj4P799T27 Lonicera japonica HOM05D007731 ORTHO05D008483 5.5e-29 132.1 292 44.2
Actinidia16998 Actinidia chinensis HOM05D007731 ORTHO05D008483 1.6e-28 130.6 241 45.2
CSS0037397 Camellia sinensis var. sinensis HOM05D007731 ORTHO05D008483 1.6e-28 130.6 240 43.8
CSS0046256 Camellia sinensis var. sinensis HOM05D007731 ORTHO05D008483 2.7e-28 129.8 244 46.3
Gohir.A01G110400 Gossypium hirsutum HOM05D007731 ORTHO05D008483 3.6e-28 129.4 258 43.0
Cpa.g.sc26.305 Carica papaya HOM05D007731 ORTHO05D008483 4.7e-28 129.0 240 41.2
CSS0005102 Camellia sinensis var. sinensis HOM05D007731 ORTHO05D008483 6.1e-28 128.6 244 46.7
Cc00_g29330 Coffea canephora HOM05D007731 ORTHO05D008483 1.0e-27 127.9 230 42.6
MSTRG.25262 Avicennia marina HOM05D007731 ORTHO05D008483 6.8e-27 125.2 227 41.9
Nn5g30769 Nelumbo nucifera HOM05D007731 ORTHO05D008483 8.8e-27 124.8 147 46.9
Gohir.D01G097000 Gossypium hirsutum HOM05D007731 ORTHO05D008483 2.6e-26 123.2 258 41.5
Gorai.002G122700 Gossypium raimondii HOM05D007731 ORTHO05D008483 2.6e-26 123.2 258 41.5
TWI56G0526 Tripterygium wilfordii HOM05D007731 ORTHO05D008483 4.4e-26 122.5 221 41.6
TWI12G0892 Tripterygium wilfordii HOM05D007731 ORTHO05D008483 3.7e-25 119.4 219 41.6
Lj1g0026139 Lotus japonicus HOM05D007731 ORTHO05D008483 9.2e-24 114.8 253 41.5
Actinidia15437 Actinidia chinensis HOM05D007731 ORTHO05D008483 1.7e-22 110.5 224 41.5
ClCG08G014190 Citrullus lanatus HOM05D007731 ORTHO05D008483 1.7e-22 110.5 216 41.7
CSS0031900 Camellia sinensis var. sinensis HOM05D007731 ORTHO05D008483 8.6e-22 108.2 241 41.1
PGSC0003DMG400009876 Solanum tuberosum HOM05D007731 ORTHO05D008483 8.6e-22 108.2 268 38.1
Phvul.009G009600 Phaseolus vulgaris HOM05D007731 ORTHO05D008483 5.6e-21 105.5 200 43.0
VMungo1309G0548 Vigna mungo HOM05D007731 ORTHO05D008483 7.3e-21 105.1 222 42.3
Gohir.D02G098500 Gossypium hirsutum HOM05D007731 ORTHO05D008483 9.5e-21 104.8 227 40.5
Dinv31866 Davidia involucrata HOM05D000068 ORTHO05D000084 3.6e-20 102.8 139 51.8
Eucgr.H00961 Eucalyptus grandis HOM05D007731 ORTHO05D008483 6.1e-20 102.1 209 40.2
Sed0013309 Sechium edule HOM05D007731 ORTHO05D008483 6.1e-20 102.1 217 40.6
Gorai.005G112400 Gossypium raimondii HOM05D007731 ORTHO05D008483 8.0e-20 101.7 227 40.1
Aqoxy6G02285 Aquilegia oxysepala HOM05D007731 ORTHO05D008483 1.4e-19 100.9 232 38.4
CsaV3_2G024250 Cucumis sativus L. HOM05D007731 ORTHO05D008483 1.2e-18 97.8 209 42.1
Gohir.A02G083100 Gossypium hirsutum HOM05D007731 ORTHO05D008483 1.2e-18 97.8 208 40.4
Rhsim06G0016400 Rhododendron simsii HOM05D007731 ORTHO05D008483 1.5e-18 97.4 228 36.8
PGR031G1853 Punica granatum HOM05D007731 ORTHO05D008483 4.4e-18 95.9 237 36.7
PSO541G3821 Papaver somniferum HOM05D007731 ORTHO05D008483 7.5e-18 95.1 246 35.0
TPR.G34549 Trifolium pratense HOM05D007731 ORTHO05D008483 7.5e-18 95.1 170 43.5
Rhsim06G0019700 Rhododendron simsii HOM05D007731 ORTHO05D008483 1.3e-17 94.4 236 36.0
Medtr3g113660 Medicago truncatula HOM05D007731 ORTHO05D008483 4.9e-17 92.4 183 42.6
Lsat_1_v5_gn_8_30081 Lactuca sativa HOM05D007731 ORTHO05D008483 1.1e-16 91.3 228 39.5
Psat0s2878g0040 Pisum sativum HOM05D007731 ORTHO05D008483 1.1e-16 91.3 167 40.1
Glyma.04G023500 Glycine max HOM05D007731 ORTHO05D008483 1.4e-16 90.9 243 38.3
ECA233G0921 Erigeron canadensis HOM05D007731 ORTHO05D008483 2.4e-16 90.1 246 35.8
Lalb_Chr23g0266081 Lupinus albus HOM05D007731 ORTHO05D008483 7.0e-16 88.6 219 36.1
Sc15g0004830 Simmondsia chinensis HOM05D007731 ORTHO05D008483 9.2e-16 88.2 185 39.5
arahy.Tifrunner.gnm1.ann1.WY2XWP Arachis hypogaea HOM05D007731 ORTHO05D008483 1.3e-14 84.3 232 37.5
arahy.Tifrunner.gnm1.ann1.3IU0NQ Arachis hypogaea HOM05D007731 ORTHO05D008483 1.9e-13 80.5 242 34.7
Sopen04g035340 Solanum pennellii HOM05D007731 ORTHO05D008483 4.3e-13 79.3 121 47.1
Glyma.06G023400 Glycine max HOM05D007731 ORTHO05D008483 1.0e-11 74.7 237 33.8
Ca_15482_v3 Cicer arietinum L. HOM05D007731 ORTHO05D008483 3.1e-11 73.2 125 43.2
CsaV3_3G045970 Cucumis sativus L. HOM05D007731 ORTHO05D008483 2.6e-10 70.1 211 36.5
AUR62041477 Chenopodium quinoa HOM05D007731 ORTHO05D008483 8.3e-09 65.1 99 42.4
Migut.C00858 Erythranthe guttata HOM05D007731 ORTHO05D008483 1.9e-08 63.9 167 35.9
Carub.0001s1960 Capsella rubella HOM05D009961 ORTHO05D008483 3.2e-08 63.2 48 60.4
MELO3C003742.2 Cucumis melo HOM05D007731 ORTHO05D008483 4.1e-08 62.8 237 32.9
BraA06t24726Z Brassica rapa HOM05D009961 ORTHO05D008483 9.2e-08 61.6 48 60.4
BcaB03g14337 Brassica carinata HOM05D009961 ORTHO05D008483 1.6e-07 60.8 84 44.0
Ah.11g039950 Amaranthus hybridus HOM05D047386 ORTHO05D008483 4.6e-07 59.3 196 33.2
SGA_v2.0_scaffold92G28205 Striga asiatica HOM05D007731 ORTHO05D008483 4.6e-07 59.3 244 34.8
EL10Ac1g02166 Beta vulgaris HOM05D047386 ORTHO05D008483 1.0e-06 58.2 203 35.0
Aa31LG7G4510 Aethionema arabicum HOM05D009961 ORTHO05D008483 1.3e-06 57.8 80 46.2
AL1G32880 Arabidopsis lyrata HOM05D009961 ORTHO05D008483 1.3e-06 57.8 191 33.0
BcaB07g32022 Brassica carinata HOM05D009961 ORTHO05D008483 1.3e-06 57.8 161 33.5
ClCG05G015580 Citrullus lanatus HOM05D007731 ORTHO05D008483 1.3e-06 57.8 209 33.0
VMungo0540G1436 Vigna mungo HOM05D001921 ORTHO05D001784 2.3e-06 57.0 192 30.2
THA.LOC104811421 Tarenaya hassleriana HOM05D009961 ORTHO05D008483 3.0e-06 56.6 168 35.7
AT1G20070 Arabidopsis thaliana HOM05D009961 ORTHO05D008483 3.9e-06 56.2 159 34.0
CARHR020550 Cardamine hirsuta HOM05D009961 ORTHO05D008483 3.9e-06 56.2 245 30.6
TAR362G1200 Trochodendron aralioides HOM05D001921 ORTHO05D001784 3.9e-06 56.2 158 33.5
TAR365G0872 Trochodendron aralioides HOM05D001921 ORTHO05D001784 3.9e-06 56.2 148 35.1
Potri.008G198000 Populus trichocarpa HOM05D001921 ORTHO05D001784 5.0e-06 55.8 127 37.0
Sabra10G0013000 Salix brachista HOM05D001921 ORTHO05D001784 5.0e-06 55.8 94 37.2
ATR0712G013 Amborella trichopoda HOM05D007731 ORTHO05D008483 8.6e-06 55.1 199 29.6
A07p16020 Brassica napus HOM05D009961 ORTHO05D008483 8.6e-06 55.1 245 30.2
BolC7t42871H Brassica oleracea HOM05D009961 ORTHO05D008483 8.6e-06 55.1 255 27.8
Potri.010G027500 Populus trichocarpa HOM05D001921 ORTHO05D001784 8.6e-06 55.1 125 37.6


User provided reference genes

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