Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0303091 Rosa chinensis HOM05D006069 ORTHO05D008101 1.7e-55 219.2 114 100.0
FvH4_2g38290 Fragaria vesca HOM05D006069 ORTHO05D008101 3.2e-46 188.3 115 89.6
FAN15G3329 Fragaria x ananassa HOM05D006069 ORTHO05D008101 2.7e-45 185.3 115 87.8
FAN27G3260 Fragaria x ananassa HOM05D006069 ORTHO05D008101 4.6e-45 184.5 115 87.8
COL.COLO4_26120 Corchorus olitorius HOM05D006069 ORTHO05D008101 4.1e-38 161.4 112 75.9
Prupe.1G363800 Prunus persica HOM05D006069 ORTHO05D008101 2.7e-37 158.7 113 74.3
Thecc.08G047500 Theobroma cacao HOM05D006069 ORTHO05D008101 3.5e-37 158.3 112 75.9
MD08G1011100 Malus domestica HOM05D006069 ORTHO05D008101 1.7e-36 156.0 114 75.4
TWI56G0900 Tripterygium wilfordii HOM05D006069 ORTHO05D008101 6.6e-36 154.1 111 72.1
TWI12G0868 Tripterygium wilfordii HOM05D006069 ORTHO05D008101 8.6e-36 153.7 111 72.1
Duzib041G0459 Durio zibethinus HOM05D006069 ORTHO05D008101 1.1e-35 153.3 112 72.3
Cfa013967 Carpinus fangiana HOM05D006069 ORTHO05D008101 1.5e-35 152.9 106 76.4
Duzib093G2212 Durio zibethinus HOM05D006069 ORTHO05D008101 2.5e-35 152.1 112 71.4
Haze_22649 Corylus avellana HOM05D006069 ORTHO05D008101 3.3e-35 151.8 106 75.5
Haze_22650 Corylus avellana HOM05D003905 ORTHO05D005329 4.3e-35 151.4 106 75.5
Potri.005G241200 Populus trichocarpa HOM05D006069 ORTHO05D008101 5.6e-35 151.0 105 74.3
Sabra02G0016400 Salix brachista HOM05D006069 ORTHO05D008101 5.6e-35 151.0 105 75.2
Atru.chr13.270 Acer truncatum HOM05D006069 ORTHO05D008101 7.3e-35 150.6 112 67.0
Potri.002G020200 Populus trichocarpa HOM05D006069 ORTHO05D008101 7.3e-35 150.6 106 73.6
Gohir.A06G002300 Gossypium hirsutum HOM05D006069 ORTHO05D008101 1.6e-34 149.4 113 71.7
Gohir.D06G005300 Gossypium hirsutum HOM05D006069 ORTHO05D008101 2.8e-34 148.7 113 71.7
Gorai.010G002500 Gossypium raimondii HOM05D006069 ORTHO05D008101 2.8e-34 148.7 113 71.7
QL02p011928 Quercus lobata HOM05D006069 ORTHO05D008101 3.6e-34 148.3 112 71.4
QL11p034297 Quercus lobata HOM05D006069 ORTHO05D008101 3.6e-34 148.3 112 71.4
Gohir.D05G258200 Gossypium hirsutum HOM05D006069 ORTHO05D008101 4.7e-34 147.9 107 72.9
Gorai.009G269500 Gossypium raimondii HOM05D006069 ORTHO05D008101 4.7e-34 147.9 107 72.9
Eucgr.H00971 Eucalyptus grandis HOM05D006069 ORTHO05D008101 6.2e-34 147.5 107 74.8
PGR031G1000 Punica granatum HOM05D006069 ORTHO05D008101 6.2e-34 147.5 106 74.5
Cfa013969 Carpinus fangiana HOM05D006069 ORTHO05D008101 1.1e-33 146.7 106 73.6
CiPaw.07G148400 Carya illinoinensis HOM05D006069 ORTHO05D008101 1.1e-33 146.7 106 72.6
Sabra05G0186700 Salix brachista HOM05D006069 ORTHO05D008101 1.1e-33 146.7 105 73.3
Gohir.A05G256400 Gossypium hirsutum HOM05D006069 ORTHO05D008101 1.4e-33 146.4 107 72.0
Ciclev10002907m.g Citrus clementina HOM05D006069 ORTHO05D008101 5.2e-33 144.4 112 68.8
MD15G1011100 Malus domestica HOM05D006069 ORTHO05D008101 1.2e-32 143.3 114 71.1
Cpa.g.c46170 Carica papaya HOM05D006069 ORTHO05D008101 1.5e-32 142.9 107 70.1
Cpa.g.sc64.165 Carica papaya HOM05D006069 ORTHO05D008101 1.5e-32 142.9 107 70.1
VMungo0647G0980 Vigna mungo HOM05D006069 ORTHO05D008101 2.0e-32 142.5 110 70.0
Phvul.001G005300 Phaseolus vulgaris HOM05D006069 ORTHO05D008101 2.2e-31 139.0 110 68.2
Oeu061972.1 Olea europaea HOM05D006069 ORTHO05D008101 4.9e-31 137.9 106 65.1
Glyma.14G219800 Glycine max HOM05D006069 ORTHO05D008101 6.4e-31 137.5 108 67.6
Sc02g0008640 Simmondsia chinensis HOM05D006069 ORTHO05D008101 8.4e-31 137.1 106 68.9
TAR625G1525 Trochodendron aralioides HOM05D006069 ORTHO05D008101 4.1e-30 134.8 106 66.0
Oeu014170.1 Olea europaea HOM05D006069 ORTHO05D008101 5.4e-30 134.4 106 64.2
Nn6g32021 Nelumbo nucifera HOM05D006069 ORTHO05D008101 7.1e-30 134.0 106 67.0
Manes.18G012400 Manihot esculenta HOM05D006069 ORTHO05D008101 1.2e-29 133.3 105 67.6
Lalb_Chr01g0008621 Lupinus albus HOM05D006069 ORTHO05D008101 2.1e-29 132.5 111 65.8
Lalb_Chr19g0131451 Lupinus albus HOM05D006069 ORTHO05D008101 2.1e-29 132.5 107 69.2
Aa31LG4G6010 Aethionema arabicum HOM05D006069 ORTHO05D008101 6.0e-29 131.0 119 62.2
arahy.Tifrunner.gnm1.ann1.LEZM1J Arachis hypogaea HOM05D006069 ORTHO05D008101 6.0e-29 131.0 110 65.5
CANSAT25G1864 Cannabis sativa HOM05D006069 ORTHO05D008101 6.0e-29 131.0 110 64.5
Duzib116G0547 Durio zibethinus HOM05D006069 ORTHO05D008101 7.8e-29 130.6 98 71.4
Nitab4.5_0000934g0080 Nicotiana tabacum HOM05D006069 ORTHO05D008101 7.8e-29 130.6 117 59.0
Manes.05G145900 Manihot esculenta HOM05D006069 ORTHO05D008101 1.3e-28 129.8 98 69.4
EL10Ac1g02174 Beta vulgaris HOM05D006069 ORTHO05D008101 3.0e-28 128.6 105 62.9
SalBow8G0098 Salvia bowleyana HOM05D006069 ORTHO05D008101 3.0e-28 128.6 107 64.5
Sp5g30930 Schrenkiella parvula HOM05D006069 ORTHO05D008101 5.1e-28 127.9 120 59.2
Actinidia15431 Actinidia chinensis HOM05D006069 ORTHO05D008101 6.6e-28 127.5 108 59.3
Actinidia16995 Actinidia chinensis HOM05D006069 ORTHO05D006669 8.6e-28 127.1 106 58.5
Lalb_Chr03g0033431 Lupinus albus HOM05D006069 ORTHO05D008101 8.6e-28 127.1 107 62.6
DCAR_013877 Daucus carota HOM05D006069 ORTHO05D000038 1.1e-27 126.7 103 63.1
Oeu054481.1 Olea europaea HOM05D006069 ORTHO05D008101 1.5e-27 126.3 106 63.2
AT1G75810 Arabidopsis thaliana HOM05D006069 ORTHO05D008101 1.9e-27 125.9 122 57.4
THA.LOC104811416 Tarenaya hassleriana HOM05D006069 ORTHO05D008101 1.9e-27 125.9 111 60.4
AL2G35800 Arabidopsis lyrata HOM05D006069 ORTHO05D008101 2.5e-27 125.6 122 57.4
Carub.0002s2266 Capsella rubella HOM05D006069 ORTHO05D008101 3.3e-27 125.2 123 55.3
Ca_00837_v3 Cicer arietinum L. HOM05D006069 ORTHO05D008101 3.3e-27 125.2 106 62.3
Medtr3g113620 Medicago truncatula HOM05D006069 ORTHO05D008101 3.3e-27 125.2 107 65.4
Dinv31861 Davidia involucrata HOM05D006069 ORTHO05D000038 7.3e-27 124.0 103 64.1
BcaC03g15627 Brassica carinata HOM05D006069 ORTHO05D008101 9.6e-27 123.6 122 57.4
SGA_v2.0_scaffold11G05937 Striga asiatica HOM05D006069 ORTHO05D008101 9.6e-27 123.6 105 61.0
CARHR069230 Cardamine hirsuta HOM05D006069 ORTHO05D008101 1.2e-26 123.2 120 55.8
Hma1.2p1_0733F.1_g210300 Hydrangea macrophylla HOM05D006069 ORTHO05D008101 1.2e-26 123.2 105 61.9
BraA02t07058Z Brassica rapa HOM05D006069 ORTHO05D008101 1.6e-26 122.9 125 56.0
BcaB05g24944 Brassica carinata HOM05D006069 ORTHO05D008101 2.1e-26 122.5 125 56.8
A02p20240 Brassica napus HOM05D006069 ORTHO05D008101 2.1e-26 122.5 125 56.0
C02p33660 Brassica napus HOM05D006069 ORTHO05D008101 2.1e-26 122.5 125 55.2
BolC2t09338H Brassica oleracea HOM05D006069 ORTHO05D008101 2.1e-26 122.5 125 55.2
Thhalv10019558m.g Eutrema salsugineum HOM05D006069 ORTHO05D008101 2.1e-26 122.5 120 58.3
SalBow7G4587 Salvia bowleyana HOM05D006069 ORTHO05D008101 2.1e-26 122.5 105 61.0
DCAR_016725 Daucus carota HOM05D006069 ORTHO05D008101 2.8e-26 122.1 106 59.4
Glyma.06G023700 Glycine max HOM05D006069 ORTHO05D008101 2.8e-26 122.1 107 61.7
Nitab4.5_0000569g0030 Nicotiana tabacum HOM05D006069 ORTHO05D008101 3.6e-26 121.7 106 57.5
Peaxi162Scf00081g00135 Petunia axillaris HOM05D002628 ORTHO05D008101 4.7e-26 121.3 105 57.1
Migut.N03168 Erythranthe guttata HOM05D006069 ORTHO05D008101 6.2e-26 120.9 105 58.1
Sc15g0004900 Simmondsia chinensis HOM05D006069 ORTHO05D008101 6.2e-26 120.9 106 61.3
Solyc04g078060.1 Solanum lycopersicum HOM05D006069 ORTHO05D008101 6.2e-26 120.9 112 58.9
VMungo1309G1320 Vigna mungo HOM05D006069 ORTHO05D008101 6.2e-26 120.9 107 59.8
PGSC0003DMG400021511 Solanum tuberosum HOM05D006069 ORTHO05D008101 1.4e-25 119.8 112 58.9
unitig_82.g27107 Utricularia gibba HOM05D006069 ORTHO05D008101 1.4e-25 119.8 105 57.1
Sopen04g031650 Solanum pennellii HOM05D006069 ORTHO05D008101 1.8e-25 119.4 114 57.0
CSS0019530 Camellia sinensis var. sinensis HOM05D006069 ORTHO05D008101 2.4e-25 119.0 106 58.5
Glyma.17G258800 Glycine max HOM05D006069 ORTHO05D008101 2.4e-25 119.0 104 63.5
THA.LOC104805018 Tarenaya hassleriana HOM05D006069 ORTHO05D008101 2.4e-25 119.0 114 60.5
Nitab4.5_0007809g0010 Nicotiana tabacum HOM05D006069 ORTHO05D008101 3.1e-25 118.6 109 55.0
Psat0s2878g0120 Pisum sativum HOM05D006069 ORTHO05D008101 3.1e-25 118.6 107 60.7
Lsat_1_v5_gn_0_33081 Lactuca sativa HOM05D006069 ORTHO05D008101 4.0e-25 118.2 107 60.7
Lsat_1_v5_gn_8_29900 Lactuca sativa HOM05D006069 ORTHO05D008101 4.0e-25 118.2 107 60.7
Ah.00g000260 Amaranthus hybridus HOM05D006069 ORTHO05D008101 6.9e-25 117.5 105 59.0
SGA_v2.0_scaffold47G17498 Striga asiatica HOM05D006069 ORTHO05D008101 6.9e-25 117.5 108 59.3
AUR62041483 Chenopodium quinoa HOM05D006069 ORTHO05D008101 1.2e-24 116.7 107 61.7
BcaC08g47069 Brassica carinata HOM05D006069 ORTHO05D008101 2.6e-24 115.5 120 53.3
unitig_747.g21531 Utricularia gibba HOM05D006069 ORTHO05D008101 3.4e-24 115.2 106 55.7
HanXRQChr13g0387231 Helianthus annuus HOM05D006069 ORTHO05D008101 5.8e-24 114.4 108 61.1
arahy.Tifrunner.gnm1.ann1.Q2AYB8 Arachis hypogaea HOM05D006069 ORTHO05D008101 9.9e-24 113.6 110 55.5
arahy.Tifrunner.gnm1.ann1.KJD857 Arachis hypogaea HOM05D006069 ORTHO05D008101 4.9e-23 111.3 110 56.4
C06p49760 Brassica napus HOM05D006069 ORTHO05D008101 6.4e-23 110.9 120 52.5
PGSC0003DMG400011549 Solanum tuberosum HOM05D006069 ORTHO05D008101 8.4e-23 110.5 118 49.2
Sopen12g030410 Solanum pennellii HOM05D006069 ORTHO05D008101 1.9e-22 109.4 116 49.1
Nitab4.5_0003228g0030 Nicotiana tabacum HOM05D006069 ORTHO05D008101 3.2e-22 108.6 108 55.6
Lalb_Chr23g0266111 Lupinus albus HOM05D006069 ORTHO05D008101 4.2e-22 108.2 107 52.3
Phvul.009G017800 Phaseolus vulgaris HOM05D006069 ORTHO05D008101 5.4e-22 107.8 98 59.2
Migut.C00852 Erythranthe guttata HOM05D006069 ORTHO05D008101 2.7e-21 105.5 98 56.1
Lalb_Chr11g0061821 Lupinus albus HOM05D006069 ORTHO05D008101 4.6e-21 104.8 107 52.3
ECA233G2757 Erigeron canadensis HOM05D006069 ORTHO05D008101 1.3e-20 103.2 94 57.4
Rhsim06G0020100 Rhododendron simsii HOM05D006069 ORTHO05D008101 2.3e-20 102.4 96 57.3
BcaC08g47325 Brassica carinata HOM05D006069 ORTHO05D008101 3.9e-20 101.7 126 50.0
BolC6t40015H Brassica oleracea HOM05D006069 ORTHO05D008101 3.9e-20 101.7 126 50.0
Aqoxy5G01811 Aquilegia oxysepala HOM05D006069 ORTHO05D008101 5.1e-20 101.3 111 51.4
Psat6g002280 Pisum sativum HOM05D006069 ORTHO05D008101 8.7e-20 100.5 107 50.5
Medtr1g025490 Medicago truncatula HOM05D006069 ORTHO05D008101 1.9e-19 99.4 109 53.2
PSO170G3064 Papaver somniferum HOM05D006069 ORTHO05D008101 1.9e-19 99.4 110 50.0
BcaC08g47066 Brassica carinata HOM05D006069 ORTHO05D008101 4.3e-19 98.2 123 48.8
PSO700G0183 Papaver somniferum HOM05D006069 ORTHO05D008101 7.3e-19 97.4 116 48.3
Peaxi162Scf00160g00114 Petunia axillaris HOM05D006069 ORTHO05D008101 1.7e-15 86.3 107 46.7
Dinv26438 Davidia involucrata HOM05D006069 ORTHO05D008101 4.9e-15 84.7 72 59.7
AUR62040543 Chenopodium quinoa HOM05D006069 ORTHO05D009490 1.6e-13 79.7 87 55.2
A07p41340 Brassica napus HOM05D006069 ORTHO05D032697 1.4e-09 66.6 68 52.9
SalBow6G6594 Salvia bowleyana HOM05D006069 ORTHO05D008101 9.9e-08 60.5 56 58.9
SalBow6G5718 Salvia bowleyana HOM05D006069 ORTHO05D008101 2.4e-06 55.8 55 58.2


User provided reference genes

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