Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0302911 Rosa chinensis HOM05D006392 ORTHO05D008010 1.2e-219 766.1 375 100.0
FvH4_2g38390 Fragaria vesca HOM05D006392 ORTHO05D008010 3.3e-201 704.9 373 90.9
FAN20G2474 Fragaria x ananassa HOM05D006392 ORTHO05D008010 8.4e-189 663.7 375 86.7
FAN15G0959 Fragaria x ananassa HOM05D006392 ORTHO05D008010 1.9e-188 662.5 375 86.1
FAN27G1073 Fragaria x ananassa HOM05D006392 ORTHO05D008010 2.5e-185 652.1 373 85.5
Prupe.1G364700 Prunus persica HOM05D006392 ORTHO05D008010 1.9e-172 609.4 375 78.9
MD15G1011700 Malus domestica HOM05D006392 ORTHO05D008010 3.6e-163 578.6 375 76.3
MD08G1012700 Malus domestica HOM05D006392 ORTHO05D008010 5.2e-162 574.7 375 75.2
CANSAT25G2040 Cannabis sativa HOM05D006392 ORTHO05D008010 6.3e-152 541.2 375 69.6
QL02p011683 Quercus lobata HOM05D006392 ORTHO05D008010 5.0e-149 531.6 375 68.5
Thecc.08G045200 Theobroma cacao HOM05D006392 ORTHO05D008010 3.2e-148 528.9 376 68.6
CsaV3_3G045910 Cucumis sativus L. HOM05D006392 ORTHO05D008010 4.2e-148 528.5 375 67.5
Haze_22639 Corylus avellana HOM05D006392 ORTHO05D008010 3.6e-147 525.4 412 64.1
Eucgr.F01664 Eucalyptus grandis HOM05D006392 ORTHO05D008010 6.8e-146 521.2 375 66.9
GSVIVG01009916001 Vitis vinifera HOM05D006392 ORTHO05D008010 6.8e-146 521.2 373 67.8
Lj6g0002207 Lotus japonicus HOM05D006392 ORTHO05D008010 8.8e-146 520.8 373 67.8
Gohir.A01G111000 Gossypium hirsutum HOM05D006392 ORTHO05D008010 1.2e-145 520.4 374 67.6
Cpa.g.sc26.51 Carica papaya HOM05D006392 ORTHO05D008010 2.0e-145 519.6 375 67.5
CiPaw.07G149200 Carya illinoinensis HOM05D006392 ORTHO05D008010 2.6e-145 519.2 372 68.5
TWI56G0581 Tripterygium wilfordii HOM05D006392 ORTHO05D008010 3.4e-145 518.8 375 66.7
Lalb_Chr20g0119891 Lupinus albus HOM05D006392 ORTHO05D008010 5.7e-145 518.1 369 67.8
Gorai.002G123300 Gossypium raimondii HOM05D006392 ORTHO05D008010 1.7e-144 516.5 374 67.4
Sed0018359 Sechium edule HOM05D006392 ORTHO05D008010 2.2e-144 516.2 372 67.2
Duzib093G0848 Durio zibethinus HOM05D006392 ORTHO05D008010 3.7e-144 515.4 376 67.0
Gohir.D01G097700 Gossypium hirsutum HOM05D006392 ORTHO05D008010 3.7e-144 515.4 374 67.4
Potri.005G240000 Populus trichocarpa HOM05D006392 ORTHO05D008010 4.5e-142 508.4 376 64.4
Ca_00791_v3 Cicer arietinum L. HOM05D006392 ORTHO05D008010 5.9e-142 508.1 370 67.0
Hma1.2p1_0638F.1_g193900 Hydrangea macrophylla HOM05D006392 ORTHO05D008010 5.9e-142 508.1 373 66.5
Glyma.09G103100 Glycine max HOM05D006392 ORTHO05D008010 1.3e-141 506.9 369 68.0
Phvul.005G022200 Phaseolus vulgaris HOM05D006392 ORTHO05D008010 1.3e-141 506.9 369 68.0
CSS0006206 Camellia sinensis var. sinensis HOM05D006392 ORTHO05D008010 3.8e-141 505.4 373 64.9
CSS0012189 Camellia sinensis var. sinensis HOM05D006392 ORTHO05D008010 3.8e-141 505.4 373 64.9
Medtr2g029040 Medicago truncatula HOM05D006392 ORTHO05D008010 6.6e-141 504.6 377 66.8
Cfa013957 Carpinus fangiana HOM05D006392 ORTHO05D008010 1.9e-140 503.1 366 68.0
Ciclev10001496m.g Citrus clementina HOM05D006392 ORTHO05D008010 5.5e-140 501.5 374 66.0
Sabra05G0185500 Salix brachista HOM05D006392 ORTHO05D008010 7.2e-140 501.1 376 63.8
Potri.002G021700 Populus trichocarpa HOM05D006392 ORTHO05D008010 9.5e-140 500.7 374 63.6
Rhsim06G0021200 Rhododendron simsii HOM05D006392 ORTHO05D008010 3.6e-139 498.8 373 64.6
Ca_07152_v3 Cicer arietinum L. HOM05D006392 ORTHO05D008010 8.0e-139 497.7 373 66.5
MSTRG.1188 Avicennia marina HOM05D006392 ORTHO05D008010 2.0e-137 493.0 372 64.2
AUR62033899 Chenopodium quinoa HOM05D006392 ORTHO05D008010 3.4e-137 492.3 372 63.4
arahy.Tifrunner.gnm1.ann1.8AJY4P Arachis hypogaea HOM05D006392 ORTHO05D008010 1.7e-136 490.0 356 68.3
PGR083G2660 Punica granatum HOM05D006392 ORTHO05D008010 3.7e-136 488.8 375 62.4
CAN.G311.35 Capsicum annuum HOM05D006392 ORTHO05D008010 6.3e-136 488.0 375 63.2
PGSC0003DMG400009939 Solanum tuberosum HOM05D006392 ORTHO05D008010 8.3e-136 487.6 373 64.3
Lj4C23T1 Lonicera japonica HOM05D006392 ORTHO05D008010 1.1e-135 487.3 395 61.5
arahy.Tifrunner.gnm1.ann1.GAE5DS Arachis hypogaea HOM05D006392 ORTHO05D008010 1.8e-135 486.5 356 67.7
Sopen04g035110 Solanum pennellii HOM05D006392 ORTHO05D008010 1.8e-135 486.5 373 63.8
HanXRQChr13g0387101 Helianthus annuus HOM05D006392 ORTHO05D008010 5.4e-135 485.0 374 62.3
Solyc04g081500.3 Solanum lycopersicum HOM05D006392 ORTHO05D008010 1.2e-134 483.8 373 63.5
THA.LOC104809190 Tarenaya hassleriana HOM05D006392 ORTHO05D008010 4.5e-134 481.9 377 64.7
TAR628G0005 Trochodendron aralioides HOM05D006392 ORTHO05D008010 7.8e-134 481.1 375 62.9
Actinidia21265 Actinidia chinensis HOM05D006392 ORTHO05D008010 1.0e-133 480.7 373 62.7
ECA233G3412 Erigeron canadensis HOM05D006392 ORTHO05D008010 2.3e-133 479.6 372 62.1
TWI36G0533 Tripterygium wilfordii HOM05D006392 ORTHO05D008010 2.3e-133 479.6 356 65.4
Migut.C00843 Erythranthe guttata HOM05D006392 ORTHO05D008010 5.0e-133 478.4 372 62.6
Manes.05G146900 Manihot esculenta HOM05D006392 ORTHO05D008010 1.1e-132 477.2 374 62.0
SalBow7G2189 Salvia bowleyana HOM05D006392 ORTHO05D008010 1.9e-132 476.5 382 60.7
Sabra02G0018100 Salix brachista HOM05D006392 ORTHO05D008010 3.3e-132 475.7 406 57.9
AL8G18870 Arabidopsis lyrata HOM05D006392 ORTHO05D008010 4.3e-132 475.3 375 61.3
Oeu014179.1 Olea europaea HOM05D006392 ORTHO05D008010 1.2e-131 473.8 373 63.3
VMungo1080G0965 Vigna mungo HOM05D006392 ORTHO05D008010 1.6e-131 473.4 349 66.2
EL10Ac1g02188 Beta vulgaris HOM05D006392 ORTHO05D008010 1.8e-130 469.9 356 62.1
AT5G42470 Arabidopsis thaliana HOM05D006392 ORTHO05D008010 6.8e-130 468.0 377 61.0
PSO541G2958 Papaver somniferum HOM05D006392 ORTHO05D008010 7.5e-129 464.5 367 60.5
Lsat_1_v5_gn_8_30701 Lactuca sativa HOM05D006392 ORTHO05D008010 9.8e-129 464.2 374 61.0
PSO675G2043 Papaver somniferum HOM05D006392 ORTHO05D008010 1.3e-128 463.8 367 60.5
Carub.0008s0658 Capsella rubella HOM05D006392 ORTHO05D008010 1.7e-128 463.4 378 61.1
A06p48320 Brassica napus HOM05D006392 ORTHO05D008010 8.3e-128 461.1 373 61.4
BraA06t27702Z Brassica rapa HOM05D006392 ORTHO05D008010 1.1e-127 460.7 373 61.4
Sp7g07860 Schrenkiella parvula HOM05D006392 ORTHO05D008010 1.1e-127 460.7 376 60.9
BcaC06g31757 Brassica carinata HOM05D006392 ORTHO05D008010 1.2e-126 457.2 373 60.9
ATR0810G120 Amborella trichopoda HOM05D006392 ORTHO05D008010 3.5e-126 455.7 367 59.1
BcaC02g10765 Brassica carinata HOM05D006392 ORTHO05D008010 1.5e-124 450.3 373 60.3
Aqoxy6G00284_Aqoxy6G00285 Aquilegia oxysepala HOM05D006392 ORTHO05D008010 5.6e-124 448.4 366 58.7
Thhalv10003229m.g Eutrema salsugineum HOM05D006392 ORTHO05D008010 5.6e-124 448.4 376 59.0
Aa31LG9G12590 Aethionema arabicum HOM05D006392 ORTHO05D008010 1.2e-123 447.2 349 62.2
C04p25370 Brassica napus HOM05D006392 ORTHO05D008010 3.6e-123 445.7 374 60.2
BolC4t24044H Brassica oleracea HOM05D006392 ORTHO05D008010 3.6e-123 445.7 374 60.2
DCAR_023015 Daucus carota HOM05D006392 ORTHO05D008010 4.7e-123 445.3 373 57.4
Os06g0715600 Oryza sativa ssp. japonica HOM05D006392 ORTHO05D008010 1.4e-119 433.7 373 56.6
MD11G1014100 Malus domestica HOM05D006392 ORTHO05D008010 2.1e-118 429.9 277 76.5
Psat1g169520 Pisum sativum HOM05D006392 ORTHO05D008010 1.3e-117 427.2 322 65.8
Nitab4.5_0013390g0010 Nicotiana tabacum HOM05D006392 ORTHO05D008010 6.6e-117 424.9 373 57.4
AUR62041903 Chenopodium quinoa HOM05D006392 ORTHO05D008010 9.5e-116 421.0 372 56.2
Duzib116G0836 Durio zibethinus HOM05D006392 ORTHO05D008010 8.1e-115 417.9 377 58.4
Hund05186 Selenicereus undatus HOM05D006392 ORTHO05D008010 1.5e-113 413.7 373 56.3
Eucgr.F02661 Eucalyptus grandis HOM05D006392 ORTHO05D008010 2.2e-112 409.8 304 65.1
SGA_v2.0_scaffold11G05922 Striga asiatica HOM05D006392 ORTHO05D008010 2.2e-112 409.8 372 54.3
Sc02g0008600 Simmondsia chinensis HOM05D006392 ORTHO05D008010 6.4e-112 408.3 327 60.6
Nn1g05904 Nelumbo nucifera HOM05D006392 ORTHO05D008010 7.8e-110 401.4 375 53.6
Zm00001eb228060 Zea mays HOM05D006392 ORTHO05D008010 1.0e-109 401.0 378 53.2
Peaxi162Scf00438g00835 Petunia axillaris HOM05D006392 ORTHO05D008010 3.9e-109 399.1 373 55.5
Dinv31849 Davidia involucrata HOM05D006392 ORTHO05D008010 8.6e-109 397.9 303 63.7
Hma1.2p1_0638F.1_g193910 Hydrangea macrophylla HOM05D006392 ORTHO05D008010 5.6e-108 395.2 396 53.3
SEGI_16132 Sequoiadendron giganteum HOM05D006392 ORTHO05D008010 1.2e-107 394.0 368 52.7
TPR.G17497 Trifolium pratense HOM05D006392 ORTHO05D008010 1.1e-106 391.0 255 74.9
CDE04G0374 Ceratophyllum demersum HOM05D006392 ORTHO05D008010 4.0e-106 389.0 374 52.4
MBI05_g07507_MAGBIO Magnolia biondii HOM05D006392 ORTHO05D008010 1.2e-105 387.5 356 55.6
HPP92_024091 Vanilla planifolia HOM05D006392 ORTHO05D008010 2.6e-105 386.3 370 53.8
COL.COLO4_26140 Corchorus olitorius HOM05D006392 ORTHO05D008010 4.6e-102 375.6 288 64.9
Actinidia35835 Actinidia chinensis HOM05D006392 ORTHO05D008010 2.4e-98 363.2 372 52.4
MELO3C030484.2 Cucumis melo HOM05D006392 ORTHO05D008010 2.7e-94 349.7 397 50.6
vmacro07583 Vaccinium macrocarpon HOM05D006392 ORTHO05D008010 5.6e-92 342.0 276 61.2
Actinidia16990 Actinidia chinensis HOM05D006392 ORTHO05D004187 4.0e-90 335.9 254 63.4
Glyma.15G275100 Glycine max HOM05D006392 ORTHO05D008010 1.2e-89 334.3 221 74.2
unitig_32.g11136 Utricularia gibba HOM05D006392 ORTHO05D008010 1.1e-87 327.8 284 57.0
Atru.chr13.285 Acer truncatum HOM05D006392 ORTHO05D008010 3.9e-85 319.3 340 50.9
Pp3c4_9730 Physcomitrium patens HOM05D006392 ORTHO05D008010 4.9e-80 302.4 378 44.2
CARHR181930 Cardamine hirsuta HOM05D006392 ORTHO05D008010 1.9e-79 300.4 213 67.1
AagrBONN_evm.TU.Sc2ySwM_117.3435 Anthoceros agrestis HOM05D006392 ORTHO05D008010 3.2e-79 299.7 363 43.8
Mapoly0064s0103 Marchantia polymorpha HOM05D006392 ORTHO05D008010 7.1e-79 298.5 374 41.4
SMO196G0156 Selaginella moellendorffii HOM05D006392 ORTHO05D008010 2.0e-73 280.4 369 39.8
Cc10_g01630 Coffea canephora HOM05D006392 ORTHO05D008010 4.1e-66 256.1 179 66.5
CBR_g23034 Chara braunii HOM05D006392 ORTHO05D008010 5.3e-66 255.8 393 37.4
RcHm_v2.0_Chr4g0398171 Rosa chinensis HOM05D006392 ORTHO05D008010 2.0e-57 227.3 113 96.5
Cc10_g01620 Coffea canephora HOM05D006392 ORTHO05D008010 1.6e-54 217.6 193 54.9
Aqoxy4G01015 Aquilegia oxysepala HOM05D006392 ORTHO05D008010 4.7e-46 189.5 164 55.5
Ah.11g039750 Amaranthus hybridus HOM05D006392 ORTHO05D008010 1.3e-40 171.4 148 56.8
RcHm_v2.0_Chr4g0398161 Rosa chinensis HOM05D006392 ORTHO05D008010 8.5e-40 168.7 86 98.8
TPR.G29580 Trifolium pratense HOM05D006392 ORTHO05D008010 2.2e-27 127.5 115 53.0
Actinidia27159 Actinidia chinensis HOM05D006392 ORTHO05D008010 1.1e-26 125.2 200 39.5
Zm00001eb340150 Zea mays HOM05D006392 ORTHO05D008010 3.4e-12 77.0 77 48.1
ClCG05G018230 Citrullus lanatus HOM05D006392 ORTHO05D008010 4.9e-11 73.2 44 72.7
Cre09.g401367 Chlamydomonas reinhardtii HOM05D006392 ORTHO05D008010 2.0e-09 67.8 139 32.4


User provided reference genes

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