Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0302861 Rosa chinensis HOM05D005472 ORTHO05D005897 2.9e-189 665.2 374 100.0
FAN27G2825 Fragaria x ananassa HOM05D005472 ORTHO05D005897 1.2e-155 553.5 374 81.3
FAN20G3206 Fragaria x ananassa HOM05D005472 ORTHO05D005897 1.0e-154 550.4 372 80.9
FAN15G2782 Fragaria x ananassa HOM05D005472 ORTHO05D005897 1.8e-154 549.7 370 81.1
FvH4_2g38440 Fragaria vesca HOM05D005472 ORTHO05D005897 9.1e-151 537.3 375 79.5
Prupe.1G365300 Prunus persica HOM05D005472 ORTHO05D005897 1.9e-92 343.6 367 54.0
Gohir.A05G257000 Gossypium hirsutum HOM05D005472 ORTHO05D005897 2.8e-67 260.0 366 41.0
QL02p011634 Quercus lobata HOM05D005472 ORTHO05D005897 5.3e-66 255.8 365 45.5
Gohir.D05G258500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 1.3e-64 251.1 366 40.4
Gorai.009G270000 Gossypium raimondii HOM05D005472 ORTHO05D005897 2.2e-64 250.4 366 40.4
Thecc.08G044600 Theobroma cacao HOM05D005472 ORTHO05D005897 2.9e-64 250.0 367 41.4
CiPaw.07G149800 Carya illinoinensis HOM05D005472 ORTHO05D005897 6.0e-62 242.3 366 44.0
Haze_22634 Corylus avellana HOM05D005472 ORTHO05D005897 1.3e-61 241.1 370 42.4
MD15G1012000 Malus domestica HOM05D005472 ORTHO05D005897 3.0e-61 240.0 364 44.8
Duzib041G0268 Durio zibethinus HOM05D005472 ORTHO05D005897 8.7e-61 238.4 364 40.1
TAR628G1150 Trochodendron aralioides HOM05D005472 ORTHO05D005897 4.3e-60 236.1 346 43.4
CiPaw.08G066500 Carya illinoinensis HOM05D005472 ORTHO05D005897 7.4e-60 235.3 365 42.7
Gohir.A05G186500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 7.4e-60 235.3 368 38.9
ClCG05G018260 Citrullus lanatus HOM05D005472 ORTHO05D005897 1.3e-59 234.6 369 40.4
Nn1g05892 Nelumbo nucifera HOM05D005472 ORTHO05D005897 5.3e-58 229.2 365 41.1
Gorai.009G194600 Gossypium raimondii HOM05D005472 ORTHO05D005897 1.5e-57 227.6 368 38.3
Glyma.15G134600 Glycine max HOM05D005472 ORTHO05D005897 3.4e-57 226.5 364 43.1
GSVIVG01009906001 Vitis vinifera HOM05D005472 ORTHO05D005897 4.5e-57 226.1 379 40.9
COL.COLO4_26145 Corchorus olitorius HOM05D005472 ORTHO05D005897 5.9e-57 225.7 367 40.9
CANSAT25G0086 Cannabis sativa HOM05D005472 ORTHO05D005897 7.7e-57 225.3 370 41.9
MELO3C003750.2 Cucumis melo HOM05D005472 ORTHO05D005897 3.8e-56 223.0 371 39.9
Atru.chr13.291 Acer truncatum HOM05D005472 ORTHO05D005897 6.5e-56 222.2 393 40.5
Potri.005G239500 Populus trichocarpa HOM05D005472 ORTHO05D005897 7.2e-55 218.8 361 39.6
ClCG08G014280 Citrullus lanatus HOM05D005472 ORTHO05D005897 9.4e-55 218.4 386 39.4
Cfa013951 Carpinus fangiana HOM05D005472 ORTHO05D005897 7.9e-54 215.3 327 42.5
Duzib116G0175 Durio zibethinus HOM05D005472 ORTHO05D005897 3.0e-53 213.4 328 40.9
TWI36G1185 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 6.7e-53 212.2 365 40.8
Sed0019370 Sechium edule HOM05D005472 ORTHO05D005897 8.8e-53 211.8 370 37.3
Lalb_Chr20g0120221 Lupinus albus HOM05D005472 ORTHO05D005897 2.0e-52 210.7 378 37.6
Peaxi162Scf00438g00827 Petunia axillaris HOM05D005472 ORTHO05D005897 3.3e-52 209.9 358 37.4
VMungo0540G2141 Vigna mungo HOM05D005472 ORTHO05D005897 5.7e-52 209.1 356 43.8
Glyma.09G028700 Glycine max HOM05D005472 ORTHO05D005897 9.7e-52 208.4 363 41.0
Sabra05G0185100 Salix brachista HOM05D005472 ORTHO05D005897 1.7e-51 207.6 374 39.8
Cc10_g01680 Coffea canephora HOM05D005472 ORTHO05D005897 4.8e-51 206.1 368 37.5
MELO3C011012.2 Cucumis melo HOM05D005472 ORTHO05D005897 4.8e-51 206.1 367 39.2
CsaV3_3G045880 Cucumis sativus L. HOM05D005472 ORTHO05D005897 2.4e-50 203.8 339 38.3
PGR031G2834 Punica granatum HOM05D005472 ORTHO05D005897 2.4e-50 203.8 372 37.9
CsaV3_2G029530 Cucumis sativus L. HOM05D005472 ORTHO05D005897 4.1e-50 203.0 368 39.1
PSO170G4377 Papaver somniferum HOM05D005472 ORTHO05D005897 2.0e-49 200.7 378 37.0
Phvul.006G124300 Phaseolus vulgaris HOM05D005472 ORTHO05D005897 2.6e-49 200.3 363 41.6
Eucgr.F00587 Eucalyptus grandis HOM05D005472 ORTHO05D005897 5.9e-49 199.1 366 37.2
Gohir.D05G189400 Gossypium hirsutum HOM05D005472 ORTHO05D005897 5.9e-49 199.1 339 37.2
Manes.18G013500 Manihot esculenta HOM05D005472 ORTHO05D005897 1.0e-48 198.4 356 40.7
Potri.002G022200 Populus trichocarpa HOM05D005472 ORTHO05D005897 3.8e-48 196.4 367 38.1
Ca_00891_v3 Cicer arietinum L. HOM05D005472 ORTHO05D005897 2.5e-47 193.7 400 35.8
Sed0011447 Sechium edule HOM05D005472 ORTHO05D005897 3.2e-47 193.4 369 36.9
PSO700G0202 Papaver somniferum HOM05D005472 ORTHO05D005897 4.2e-47 193.0 378 36.8
TWI12G0454 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 1.6e-46 191.0 335 39.7
TAR376G0796 Trochodendron aralioides HOM05D005472 ORTHO05D003948 1.6e-46 191.0 362 37.6
Manes.05G147400 Manihot esculenta HOM05D005472 ORTHO05D005897 2.7e-46 190.3 385 37.4
PGSC0003DMG400009864 Solanum tuberosum HOM05D005472 ORTHO05D005897 3.6e-46 189.9 378 34.4
THA.LOC104809508 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 3.6e-46 189.9 368 35.6
CAN.G311.30 Capsicum annuum HOM05D005472 ORTHO05D005897 7.9e-46 188.7 378 34.4
Sabra02G0018300 Salix brachista HOM05D005472 ORTHO05D005897 3.9e-45 186.4 364 38.2
Dinv31847 Davidia involucrata HOM05D005472 ORTHO05D005897 5.1e-45 186.0 332 41.9
Sopen04g035060 Solanum pennellii HOM05D005472 ORTHO05D005897 6.7e-45 185.7 378 32.8
Lj6g0021117 Lotus japonicus HOM05D005472 ORTHO05D005897 8.8e-45 185.3 363 38.8
Solyc04g081450.3 Solanum lycopersicum HOM05D005472 ORTHO05D005897 1.5e-44 184.5 378 32.8
Nitab4.5_0002561g0030 Nicotiana tabacum HOM05D005472 ORTHO05D005897 3.3e-44 183.3 350 35.4
THA.LOC104811410 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 4.4e-44 183.0 367 33.2
Medtr2g031630 Medicago truncatula HOM05D005472 ORTHO05D005897 4.8e-43 179.5 361 36.8
Sp1g17770 Schrenkiella parvula HOM05D005472 ORTHO05D005897 1.4e-42 177.9 371 35.8
TPR.G15190 Trifolium pratense HOM05D005472 ORTHO05D005897 3.1e-42 176.8 363 38.0
Psat1g164760 Pisum sativum HOM05D005472 ORTHO05D005897 2.9e-40 170.2 377 34.2
Actinidia15422 Actinidia chinensis HOM05D005472 ORTHO05D005897 5.0e-40 169.5 360 35.0
arahy.Tifrunner.gnm1.ann1.MUE9LA Arachis hypogaea HOM05D000672 ORTHO05D000522 5.0e-40 169.5 363 37.7
arahy.Tifrunner.gnm1.ann1.C4XWSY Arachis hypogaea HOM05D000672 ORTHO05D000522 1.9e-39 167.5 376 35.6
Ciclev10001635m.g Citrus clementina HOM05D005472 ORTHO05D005897 3.2e-39 166.8 404 32.9
Carub.0001s1951 Capsella rubella HOM05D005472 ORTHO05D005897 1.2e-38 164.9 370 33.2
AL1G32710 Arabidopsis lyrata HOM05D005472 ORTHO05D005897 2.7e-38 163.7 372 34.1
Thhalv10008122m.g Eutrema salsugineum HOM05D005472 ORTHO05D005897 6.1e-38 162.5 377 32.4
AT1G19980 Arabidopsis thaliana HOM05D005472 ORTHO05D005897 2.3e-37 160.6 366 33.1
CSS0003502 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 2.3e-37 160.6 364 34.9
BraA07t29336Z Brassica rapa HOM05D005472 ORTHO05D005897 6.7e-37 159.1 370 34.1
BolC7t42878H Brassica oleracea HOM05D005472 ORTHO05D005897 8.8e-37 158.7 370 33.2
BcaB03g14419 Brassica carinata HOM05D005472 ORTHO05D005897 2.6e-36 157.1 372 33.9
Cpa.g.sc26.42 Carica papaya HOM05D005472 ORTHO05D005897 3.3e-36 156.8 330 34.5
Aa31LG7G4450 Aethionema arabicum HOM05D005472 ORTHO05D005897 1.3e-35 154.8 370 33.5
EL10Ac1g02216 Beta vulgaris HOM05D005472 ORTHO05D005897 6.3e-35 152.5 398 32.2
CDE05G3315 Ceratophyllum demersum HOM05D005472 ORTHO05D005897 8.2e-35 152.1 361 30.7
CARHR020470 Cardamine hirsuta HOM05D005472 ORTHO05D005897 3.1e-34 150.2 365 34.2
MBI09_g31922_MAGBIO Magnolia biondii HOM05D005472 ORTHO05D005897 3.1e-34 150.2 271 37.6
BcaB03g12884 Brassica carinata HOM05D005472 ORTHO05D005897 7.0e-34 149.1 374 31.8
AUR62033908 Chenopodium quinoa HOM05D005472 ORTHO05D005897 7.0e-34 149.1 322 34.5
MSTRG.1192 Avicennia marina HOM05D005472 ORTHO05D005897 9.1e-34 148.7 382 31.9
Lj4A797T57 Lonicera japonica HOM05D005472 ORTHO05D005897 1.2e-33 148.3 325 35.1
vmacro07586 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 2.0e-33 147.5 361 34.1
BcaB03g14348 Brassica carinata HOM05D005472 ORTHO05D005897 7.7e-33 145.6 373 33.0
Atru.chr2.2949 Acer truncatum HOM05D005472 ORTHO05D005897 3.8e-32 143.3 215 43.3
SalBow7G1801 Salvia bowleyana HOM05D005472 ORTHO05D005897 3.8e-32 143.3 374 32.9
BraA08t34891Z Brassica rapa HOM05D005472 ORTHO05D005897 5.0e-32 142.9 366 32.2
Oeu007327.1 Olea europaea HOM05D005472 ORTHO05D005897 5.0e-32 142.9 379 35.6
Hund05189 Selenicereus undatus HOM05D005472 ORTHO05D005897 6.5e-32 142.5 330 30.3
Oeu054693.1 Olea europaea HOM05D005472 ORTHO05D005897 1.5e-31 141.4 315 33.7
A08p29540 Brassica napus HOM05D005472 ORTHO05D005897 4.2e-31 139.8 370 32.2
BolC8t49626H Brassica oleracea HOM05D005472 ORTHO05D005897 1.6e-30 137.9 371 31.8
SHI08069 Sapria himalayana HOM05D005472 ORTHO05D005897 2.1e-30 137.5 331 32.0
C08p19880 Brassica napus HOM05D005472 ORTHO05D005897 4.7e-30 136.3 376 32.2
C07p23450 Brassica napus HOM05D005472 ORTHO05D005897 6.1e-30 136.0 373 32.7
AUR62041912 Chenopodium quinoa HOM05D005472 ORTHO05D005897 8.0e-30 135.6 322 32.6
DCAR_023016 Daucus carota HOM05D005472 ORTHO05D005897 1.0e-29 135.2 325 34.2
BcaC07g39015 Brassica carinata HOM05D005472 ORTHO05D005897 1.8e-29 134.4 376 32.2
CDE05G0022 Ceratophyllum demersum HOM05D004890 ORTHO05D005869 8.8e-29 132.1 333 30.3
Migut.C00835 Erythranthe guttata HOM05D005472 ORTHO05D005897 8.8e-29 132.1 371 32.6
CSS0003212 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 2.0e-28 131.0 315 32.7
vmacro21726 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 2.6e-28 130.6 361 31.3
MD08G1013200 Malus domestica HOM05D005472 ORTHO05D005897 3.4e-28 130.2 164 53.0
Ah.00g000180 Amaranthus hybridus HOM05D005472 ORTHO05D005897 1.7e-27 127.9 382 28.3
Ah.11g039690 Amaranthus hybridus HOM05D005472 ORTHO05D005897 1.4e-26 124.8 362 27.3
HanXRQChr05g0145181 Helianthus annuus HOM05D005472 ORTHO05D005897 4.5e-25 119.8 304 29.3
A07p16090 Brassica napus HOM05D005472 ORTHO05D005897 1.5e-23 114.8 239 31.8
Lsat_1_v5_gn_9_46920 Lactuca sativa HOM05D005472 ORTHO05D005897 1.0e-21 108.6 364 29.1
HanXRQChr11g0322621 Helianthus annuus HOM05D005472 ORTHO05D005897 1.8e-21 107.8 358 26.5
Sc02g0008580 Simmondsia chinensis HOM05D005472 ORTHO05D005897 5.2e-21 106.3 391 30.2
unitig_0.g2085 Utricularia gibba HOM05D005472 ORTHO05D005897 1.2e-20 105.1 363 30.0
MSTRG.25248 Avicennia marina HOM05D005472 ORTHO05D005897 9.8e-20 102.1 171 37.4
PGR031G2226 Punica granatum HOM05D005472 ORTHO05D005897 1.7e-19 101.3 209 35.4
CAN.G1271.17 Capsicum annuum HOM05D005472 ORTHO05D005897 1.1e-18 98.6 251 31.1
ATR0810G127 Amborella trichopoda HOM05D005472 ORTHO05D005897 2.4e-18 97.4 244 29.9
SGA_v2.0_scaffold11G05917 Striga asiatica HOM05D005472 ORTHO05D005897 1.2e-17 95.1 370 29.7
Rhsim06G0021600 Rhododendron simsii HOM05D005472 ORTHO05D005897 4.5e-17 93.2 379 27.2
Actinidia16989 Actinidia chinensis HOM05D005472 ORTHO05D005897 7.7e-17 92.4 286 30.1
CANSAT78G2470 Cannabis sativa HOM05D005472 ORTHO05D005897 7.7e-17 92.4 116 41.4
Os04g0117200 Oryza sativa ssp. japonica HOM05D005472 ORTHO05D005897 7.7e-17 92.4 324 29.6
TWI56G0716 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 5.0e-16 89.7 163 37.4
HPP92_025683 Vanilla planifolia HOM05D005472 ORTHO05D005897 1.9e-15 87.8 231 29.0
MD00G1092800 Malus domestica HOM05D005472 ORTHO05D005897 7.2e-15 85.9 104 43.3
ECA232G3880 Erigeron canadensis HOM05D005472 ORTHO05D005897 6.1e-14 82.8 246 29.7
Aqoxy5G01787 Aquilegia oxysepala HOM05D000073 ORTHO05D000033 2.6e-12 77.4 201 27.9
Zm00001eb121210 Zea mays HOM05D005472 ORTHO05D005897 2.6e-12 77.4 222 28.4
SEGI_34762 Sequoiadendron giganteum HOM05D005472 ORTHO05D005897 3.5e-09 67.0 273 22.7
SGA_v2.0_scaffold92G28230 Striga asiatica HOM05D005472 ORTHO05D005897 1.3e-08 65.1 368 25.3
MBI09_g43704_MAGBIO Magnolia biondii HOM05D005472 ORTHO05D005897 2.1e-06 57.8 133 39.8


User provided reference genes

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