Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0302841 Rosa chinensis HOM05D006775 ORTHO05D008344 2.3e-168 595.5 301 100.0
FAN20G0357 Fragaria x ananassa HOM05D006775 ORTHO05D008344 7.2e-106 387.9 351 59.8
FvH4_2g38460 Fragaria vesca HOM05D006775 ORTHO05D008344 4.2e-98 362.1 330 58.8
MD00G1092600 Malus domestica HOM05D006775 ORTHO05D008344 2.2e-83 313.2 237 64.6
Cfa015346 Carpinus fangiana HOM05D006775 ORTHO05D008344 3.6e-65 252.7 250 54.0
QL06p007489 Quercus lobata HOM05D006775 ORTHO05D008344 6.1e-65 251.9 249 53.0
DCAR_002444 Daucus carota HOM05D006775 ORTHO05D008344 1.1e-61 241.1 240 48.8
CiPaw.02G086400 Carya illinoinensis HOM05D006775 ORTHO05D008344 1.9e-61 240.4 238 52.9
Hma1.2p1_0823F.1_g224630 Hydrangea macrophylla HOM05D006775 ORTHO05D008344 1.9e-61 240.4 241 49.8
Actinidia40225 Actinidia chinensis HOM05D006775 ORTHO05D008344 6.0e-60 235.3 240 47.9
Atru.chr4.2756 Acer truncatum HOM05D006775 ORTHO05D008344 7.8e-60 235.0 235 48.5
Eucgr.H03770 Eucalyptus grandis HOM05D006775 ORTHO05D008344 5.0e-59 232.3 240 50.8
Thecc.04G277900 Theobroma cacao HOM05D006775 ORTHO05D008344 8.6e-59 231.5 245 48.6
Cpa.g.sc1008.3 Carica papaya HOM05D006775 ORTHO05D008344 1.5e-58 230.7 235 51.1
vmacro08201 Vaccinium macrocarpon HOM05D006775 ORTHO05D008344 1.9e-58 230.3 229 48.5
COL.COLO4_13925 Corchorus olitorius HOM05D006775 ORTHO05D008344 5.6e-58 228.8 241 50.2
TWI09G0159 Tripterygium wilfordii HOM05D006775 ORTHO05D008344 5.6e-58 228.8 239 50.2
SGA_v2.0_scaffold57G20240 Striga asiatica HOM05D006775 ORTHO05D008344 7.3e-58 228.4 235 48.5
Cc03_g02340 Coffea canephora HOM05D006775 ORTHO05D008344 1.2e-57 227.6 241 45.2
Lj3A812T71 Lonicera japonica HOM05D006775 ORTHO05D008344 8.0e-57 224.9 243 46.5
Duzib151G0911 Durio zibethinus HOM05D006775 ORTHO05D008344 1.1e-56 224.6 230 50.9
Ciclev10006777m.g Citrus clementina HOM05D000611 ORTHO05D000809 5.2e-56 222.2 241 47.7
Prupe.1G365500 Prunus persica HOM05D006775 ORTHO05D008344 5.2e-56 222.2 265 46.8
TWI09G0706 Tripterygium wilfordii HOM05D006775 ORTHO05D008344 5.2e-56 222.2 239 50.6
MSTRG.10056 Avicennia marina HOM05D006775 ORTHO05D008344 8.9e-56 221.5 237 48.1
Manes.15G016600 Manihot esculenta HOM05D006775 ORTHO05D008344 8.9e-56 221.5 240 49.2
SalBow2G3406 Salvia bowleyana HOM05D006775 ORTHO05D008344 1.2e-55 221.1 237 47.3
Migut.G00207 Erythranthe guttata HOM05D006775 ORTHO05D008344 3.4e-55 219.5 237 46.0
Nitab4.5_0005595g0020 Nicotiana tabacum HOM05D006775 ORTHO05D008344 9.8e-55 218.0 237 46.4
PGR004G1240 Punica granatum HOM05D006775 ORTHO05D008344 1.7e-54 217.2 251 46.2
Aqoxy5G01958 Aquilegia oxysepala HOM05D006775 ORTHO05D008344 2.2e-54 216.9 251 45.4
Sc25g0004760 Simmondsia chinensis HOM05D006775 ORTHO05D008344 4.9e-54 215.7 241 46.9
PGSC0003DMG400022660 Solanum tuberosum HOM05D006775 ORTHO05D008344 1.1e-53 214.5 237 46.8
Sabra08G0157200 Salix brachista HOM05D006775 ORTHO05D008344 4.1e-53 212.6 237 47.3
Glyma.07G251400 Glycine max HOM05D006775 ORTHO05D008344 7.0e-53 211.8 240 46.7
Gohir.D10G166800 Gossypium hirsutum HOM05D006775 ORTHO05D008344 7.0e-53 211.8 237 47.3
Phvul.003G101000 Phaseolus vulgaris HOM05D006775 ORTHO05D008344 7.0e-53 211.8 237 47.7
HanXRQChr03g0079491 Helianthus annuus HOM05D006775 ORTHO05D008344 9.2e-53 211.5 245 46.1
Lsat_1_v5_gn_5_50761 Lactuca sativa HOM05D006775 ORTHO05D008344 1.6e-52 210.7 250 44.8
Nn3g21322 Nelumbo nucifera HOM05D006775 ORTHO05D008344 1.6e-52 210.7 277 42.2
Potri.008G204800 Populus trichocarpa HOM05D006775 ORTHO05D008344 2.1e-52 210.3 237 46.8
Solyc01g067280.3 Solanum lycopersicum HOM05D006775 ORTHO05D008344 2.1e-52 210.3 237 45.6
VMungo1215G1959 Vigna mungo HOM05D006775 ORTHO05D008344 4.6e-52 209.1 231 48.1
Sopen01g029070 Solanum pennellii HOM05D006775 ORTHO05D008344 7.8e-52 208.4 237 45.6
Nitab4.5_0003256g0010 Nicotiana tabacum HOM05D006775 ORTHO05D008344 2.3e-51 206.8 239 45.6
Gorai.011G186100 Gossypium raimondii HOM05D006775 ORTHO05D008344 8.6e-51 204.9 237 46.8
GSVIVG01017799001 Vitis vinifera HOM05D000611 ORTHO05D000809 3.3e-50 203.0 237 46.8
Gohir.A09G233400 Gossypium hirsutum HOM05D006775 ORTHO05D008344 5.6e-50 202.2 240 46.7
ECA240G4404 Erigeron canadensis HOM05D006775 ORTHO05D008344 9.5e-50 201.4 246 43.9
Glyma.17G022900 Glycine max HOM05D006775 ORTHO05D008344 9.5e-50 201.4 245 44.5
MBI18_g12413_MAGBIO Magnolia biondii HOM05D006775 ORTHO05D008344 2.8e-49 199.9 252 43.7
PSO832G0266 Papaver somniferum HOM05D006775 ORTHO05D008344 1.1e-48 198.0 247 43.7
Lj4g0016853 Lotus japonicus HOM05D006775 ORTHO05D008344 2.3e-48 196.8 252 42.1
TAR633G2345 Trochodendron aralioides HOM05D001386 ORTHO05D003791 2.3e-48 196.8 230 47.4
Peaxi162Scf00386g00010 Petunia axillaris HOM05D006775 ORTHO05D008344 3.1e-48 196.4 246 41.5
Gohir.D09G234500 Gossypium hirsutum HOM05D006775 ORTHO05D008344 4.0e-48 196.1 232 47.4
arahy.Tifrunner.gnm1.ann1.HV9WHL Arachis hypogaea HOM05D006775 ORTHO05D008344 8.9e-48 194.9 277 40.8
ClCG05G005800 Citrullus lanatus HOM05D006775 ORTHO05D008344 1.5e-47 194.1 239 41.4
MELO3C006607.2 Cucumis melo HOM05D006775 ORTHO05D008344 2.6e-47 193.4 236 42.4
Sed0012602 Sechium edule HOM05D006775 ORTHO05D008344 5.8e-47 192.2 242 41.7
arahy.Tifrunner.gnm1.ann1.UNR197 Arachis hypogaea HOM05D006775 ORTHO05D008344 2.2e-46 190.3 279 40.9
AUR62042989 Chenopodium quinoa HOM05D006775 ORTHO05D008344 8.3e-46 188.3 238 42.9
CsaV3_3G014150 Cucumis sativus L. HOM05D006775 ORTHO05D008344 8.3e-46 188.3 236 41.5
Gorai.006G257400 Gossypium raimondii HOM05D006775 ORTHO05D008344 8.3e-46 188.3 232 46.6
EL10Ac3g06567 Beta vulgaris HOM05D006775 ORTHO05D008344 1.1e-45 188.0 241 44.0
Carub.0007s2625 Capsella rubella HOM05D006775 ORTHO05D008344 4.1e-45 186.0 252 44.0
CARHR289990 Cardamine hirsuta HOM05D006775 ORTHO05D008344 1.2e-44 184.5 244 43.9
Nn4g25991 Nelumbo nucifera HOM05D006775 ORTHO05D008344 2.1e-44 183.7 230 41.7
Ah.13g074540 Amaranthus hybridus HOM05D006196 ORTHO05D007758 2.7e-44 183.3 231 42.9
Medtr4g118790 Medicago truncatula HOM05D006775 ORTHO05D008344 2.7e-44 183.3 240 42.9
Lalb_Chr13g0303871 Lupinus albus HOM05D006775 ORTHO05D008344 6.0e-44 182.2 238 42.0
Sp7g13860 Schrenkiella parvula HOM05D006775 ORTHO05D008344 1.1e-42 177.9 246 43.5
BcaC09g50254 Brassica carinata HOM05D001154 ORTHO05D001175 1.5e-42 177.6 244 43.9
C01p27330 Brassica napus HOM05D006775 ORTHO05D008344 1.5e-42 177.6 244 43.9
BolC1t02676H Brassica oleracea HOM05D006775 ORTHO05D008344 1.5e-42 177.6 244 43.9
HPP92_025211 Vanilla planifolia HOM05D006775 ORTHO05D008344 1.9e-42 177.2 241 38.6
A01p21970 Brassica napus HOM05D006775 ORTHO05D008344 3.3e-42 176.4 244 43.9
BraA01t02103Z Brassica rapa HOM05D006775 ORTHO05D008344 3.3e-42 176.4 244 43.9
HPP92_025229 Vanilla planifolia HOM05D006775 ORTHO05D008344 4.3e-42 176.0 241 38.6
ATR0706G197 Amborella trichopoda HOM05D006775 ORTHO05D008344 7.3e-42 175.3 230 40.0
TWI09G0165 Tripterygium wilfordii HOM05D006775 ORTHO05D008344 7.3e-42 175.3 181 50.3
Aa31LG9G1860 Aethionema arabicum HOM05D006775 ORTHO05D008344 9.5e-42 174.9 245 40.4
unitig_32.g10786 Utricularia gibba HOM05D006775 ORTHO05D008344 1.2e-41 174.5 231 41.1
Psat4g030480 Pisum sativum HOM05D006775 ORTHO05D008344 4.7e-41 172.6 240 41.2
CANSAT78G0382 Cannabis sativa HOM05D006775 ORTHO05D008344 6.2e-41 172.2 238 42.4
BcaNung00261 Brassica carinata HOM05D006775 ORTHO05D008344 1.8e-40 170.6 244 42.6
TPR.G14956 Trifolium pratense HOM05D006775 ORTHO05D008344 1.2e-39 167.9 240 41.2
THA.LOC104820238 Tarenaya hassleriana HOM05D006775 ORTHO05D008344 1.5e-39 167.5 241 39.4
Psat4g030400 Pisum sativum HOM05D006775 ORTHO05D008344 2.0e-39 167.2 240 40.0
Duzib052G0853 Durio zibethinus HOM05D006775 ORTHO05D008344 2.9e-38 163.3 240 42.1
Oeu062887.1 Olea europaea HOM05D006775 ORTHO05D008344 4.9e-38 162.5 153 52.9
Gohir.D10G153500 Gossypium hirsutum HOM05D006775 ORTHO05D008344 4.2e-37 159.5 231 41.6
Dinv38323 Davidia involucrata HOM05D006775 ORTHO05D008344 1.6e-36 157.5 158 48.1
Ca_21549_v3 Cicer arietinum L. HOM05D006775 ORTHO05D008344 2.7e-36 156.8 231 39.8
Rhsim04G0216500 Rhododendron simsii HOM05D006775 ORTHO05D008344 6.0e-36 155.6 233 37.8
Os05g0372800 Oryza sativa ssp. japonica HOM05D006775 ORTHO05D008344 1.0e-35 154.8 235 37.0
Gohir.A10G101330 Gossypium hirsutum HOM05D006775 ORTHO05D008344 1.5e-34 151.0 189 43.4
Zm00001eb285420 Zea mays HOM05D006775 ORTHO05D008344 1.1e-32 144.8 230 37.8
Haze_01265 Corylus avellana HOM05D006775 ORTHO05D008344 4.0e-32 142.9 170 46.5
AT4G15563 Arabidopsis thaliana HOM05D006775 ORTHO05D008344 1.7e-27 127.5 164 45.7
AagrBONN_evm.TU.Sc2ySwM_362.2565 Anthoceros agrestis HOM05D006775 ORTHO05D008344 1.5e-26 124.4 234 30.3
AL7G39920 Arabidopsis lyrata HOM05D006775 ORTHO05D008344 4.3e-26 122.9 164 43.9
Pp3c2_550 Physcomitrium patens HOM05D006775 ORTHO05D008344 4.3e-26 122.9 259 30.1
CDE08G1672 Ceratophyllum demersum HOM05D006775 ORTHO05D008344 9.6e-26 121.7 238 32.4
Thhalv10026419m.g Eutrema salsugineum HOM05D006775 ORTHO05D008344 3.6e-25 119.8 164 43.3
HPP92_025275 Vanilla planifolia HOM05D006775 ORTHO05D008344 4.0e-24 116.3 154 37.0
SMO340G0127 Selaginella moellendorffii HOM05D006775 ORTHO05D008344 5.3e-24 115.9 152 40.8
MD09G1114900 Malus domestica HOM05D006775 ORTHO05D008344 1.5e-18 97.8 79 54.4
Duzib212G0132 Durio zibethinus HOM05D006775 ORTHO05D008344 8.1e-17 92.0 98 46.9
CSS0032456 Camellia sinensis var. sinensis HOM05D006775 ORTHO05D008344 1.1e-16 91.7 80 56.2
Eucgr.A01819 Eucalyptus grandis HOM05D006775 ORTHO05D008344 3.1e-16 90.1 90 46.7
CBR_g21749 Chara braunii HOM05D006775 ORTHO05D008344 3.4e-15 86.7 164 36.0
Haze_01266 Corylus avellana HOM05D006775 ORTHO05D008344 2.2e-14 84.0 75 57.3
Gorai.011G171400 Gossypium raimondii HOM05D006775 ORTHO05D008344 5.5e-13 79.3 113 41.6
Oeu052260.1 Olea europaea HOM05D006775 ORTHO05D008344 7.1e-13 79.0 156 37.2
CSS0028683 Camellia sinensis var. sinensis HOM05D006775 ORTHO05D008344 1.6e-12 77.8 83 42.2
Rhsim12G0090200 Rhododendron simsii HOM05D006775 ORTHO05D008344 4.6e-12 76.3 77 49.4
Zm00001eb351020 Zea mays HOM05D006775 ORTHO05D008344 6.0e-12 75.9 148 35.1
PSO210G2970 Papaver somniferum HOM05D006775 ORTHO05D008344 1.0e-11 75.1 104 40.4
Aqoxy5G00644 Aquilegia oxysepala HOM05D006775 ORTHO05D008344 1.3e-11 74.7 87 41.4
Actinidia23427 Actinidia chinensis HOM05D006775 ORTHO05D008344 1.8e-08 64.3 62 43.5


User provided reference genes

Program Settings