Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0302801 Rosa chinensis HOM05D007378 ORTHO05D007577 0.0e+00 1451.0 757 100.0
FvH4_2g38520 Fragaria vesca HOM05D007378 ORTHO05D007577 1.4e-304 1049.3 762 77.6
FAN15G3724 Fragaria x ananassa HOM05D007378 ORTHO05D007577 2.8e-300 1035.0 793 73.9
FAN27G0575 Fragaria x ananassa HOM05D007378 ORTHO05D007577 1.5e-290 1002.7 761 75.0
FAN20G0665 Fragaria x ananassa HOM05D007378 ORTHO05D007577 6.5e-281 970.7 706 77.3
Prupe.1G365800 Prunus persica HOM05D007378 ORTHO05D007577 3.2e-227 792.3 774 61.1
MD08G1013300 Malus domestica HOM05D007378 ORTHO05D007577 3.8e-204 715.7 775 57.5
MD15G1012700 Malus domestica HOM05D007378 ORTHO05D007577 1.1e-195 687.6 769 56.6
QL02p011519 Quercus lobata HOM05D007378 ORTHO05D007577 1.4e-137 494.6 800 43.5
Cfa013945 Carpinus fangiana HOM05D007378 ORTHO05D007577 2.0e-128 464.2 771 39.9
Haze_22630 Corylus avellana HOM05D007378 ORTHO05D007577 7.5e-128 462.2 780 40.0
Thecc.08G043900 Theobroma cacao HOM05D007378 ORTHO05D007577 6.0e-125 452.6 787 42.7
Duzib093G0923 Durio zibethinus HOM05D007378 ORTHO05D007577 2.3e-121 440.7 782 42.2
COL.COLO4_26152 Corchorus olitorius HOM05D007378 ORTHO05D007577 4.9e-111 406.4 784 40.6
Potri.005G238800 Populus trichocarpa HOM05D007378 ORTHO05D007577 1.1e-110 405.2 792 39.8
Ciclev10000382m.g Citrus clementina HOM05D007378 ORTHO05D007577 7.1e-110 402.5 772 40.9
Dinv31841 Davidia involucrata HOM05D007378 ORTHO05D007577 6.4e-103 379.4 771 39.2
TWI12G0183 Tripterygium wilfordii HOM05D007378 ORTHO05D007577 6.0e-101 372.9 815 37.3
Potri.002G022800 Populus trichocarpa HOM05D007378 ORTHO05D007577 5.1e-100 369.8 801 37.8
CiPaw.07G150400 Carya illinoinensis HOM05D007378 ORTHO05D007577 5.6e-99 366.3 695 39.1
TWI36G1616 Tripterygium wilfordii HOM05D007378 ORTHO05D007577 8.1e-98 362.5 802 36.3
CiPaw.08G066200 Carya illinoinensis HOM05D007378 ORTHO05D007577 4.0e-97 360.1 753 39.4
Duzib116G0067 Durio zibethinus HOM05D007378 ORTHO05D007577 5.3e-97 359.8 717 39.7
Dinv39514 Davidia involucrata HOM05D007378 ORTHO05D007577 1.3e-95 355.1 710 37.9
Manes.05G147800 Manihot esculenta HOM05D007378 ORTHO05D007577 6.2e-90 336.3 704 39.2
Sabra02G0018600 Salix brachista HOM05D007378 ORTHO05D007577 6.9e-89 332.8 774 37.0
Cpa.g.sc26.38 Carica papaya HOM05D007378 ORTHO05D007577 1.2e-88 332.0 761 36.8
Sabra05G0184500 Salix brachista HOM05D007378 ORTHO05D007577 2.5e-86 324.3 817 36.4
TWI56G0017 Tripterygium wilfordii HOM05D007378 ORTHO05D007577 3.2e-86 323.9 725 36.7
Atru.chr13.296 Acer truncatum HOM05D007378 ORTHO05D007577 4.8e-82 310.1 535 42.6
GSVIVG01009901001 Vitis vinifera HOM05D007378 ORTHO05D007577 8.2e-82 309.3 596 39.9
TAR381G0696 Trochodendron aralioides HOM05D007378 ORTHO05D007577 7.6e-80 302.8 700 37.0
CSS0021578 Camellia sinensis var. sinensis HOM05D007378 ORTHO05D007577 1.9e-78 298.1 801 34.1
Manes.18G013740 Manihot esculenta HOM05D007378 ORTHO05D007577 3.2e-78 297.4 760 34.7
CANSAT25G3202 Cannabis sativa HOM05D007378 ORTHO05D007577 1.2e-72 278.9 771 35.5
Hma1.2p1_0023F.1_g015450 Hydrangea macrophylla HOM05D007378 ORTHO05D007577 5.9e-72 276.6 749 35.0
Actinidia15419 Actinidia chinensis HOM05D007378 ORTHO05D007577 1.4e-70 271.9 752 35.0
Eucgr.F00598 Eucalyptus grandis HOM05D007378 ORTHO05D007577 6.1e-69 266.5 756 33.7
Lj1g0027004 Lotus japonicus HOM05D007378 ORTHO05D007577 2.8e-66 257.7 739 32.7
VMungo0647G1459 Vigna mungo HOM05D007378 ORTHO05D007577 1.8e-65 255.0 713 33.1
Glyma.14G219000 Glycine max HOM05D007378 ORTHO05D007577 5.3e-65 253.4 718 33.4
Glyma.17G258000 Glycine max HOM05D007378 ORTHO05D007577 6.5e-63 246.5 721 32.3
Glyma.06G024600 Glycine max HOM05D007378 ORTHO05D007577 1.9e-62 245.0 784 31.0
Lalb_Chr11g0061931 Lupinus albus HOM05D007378 ORTHO05D007577 4.2e-62 243.8 739 32.1
Glyma.04G024500 Glycine max HOM05D007378 ORTHO05D007577 7.2e-62 243.0 756 31.2
VMungo1309G2950 Vigna mungo HOM05D007378 ORTHO05D007577 9.4e-62 242.7 749 31.5
Phvul.001G006800 Phaseolus vulgaris HOM05D007378 ORTHO05D007577 5.1e-60 236.9 726 32.4
Ca_15483_v3 Cicer arietinum L. HOM05D007378 ORTHO05D007577 1.5e-59 235.3 755 32.1
Phvul.009G016700 Phaseolus vulgaris HOM05D007378 ORTHO05D007577 1.7e-58 231.9 735 30.9
Duzib041G0283 Durio zibethinus HOM05D007378 ORTHO05D007577 1.8e-57 228.4 434 40.1
arahy.Tifrunner.gnm1.ann1.WP2VUZ Arachis hypogaea HOM05D007378 ORTHO05D007577 9.1e-57 226.1 747 32.0
arahy.Tifrunner.gnm1.ann1.KUKA7T Arachis hypogaea HOM05D007378 ORTHO05D007577 2.2e-55 221.5 746 31.5
TPR.G34540 Trifolium pratense HOM05D007378 ORTHO05D007577 6.5e-55 219.9 762 29.5
DCAR_013867 Daucus carota HOM05D007378 ORTHO05D007577 2.5e-54 218.0 742 30.5
Actinidia16984 Actinidia chinensis HOM05D007378 ORTHO05D007577 2.0e-51 208.4 679 32.7
Medtr3g113840 Medicago truncatula HOM05D007378 ORTHO05D007577 5.7e-51 206.8 745 31.0
PGR031G0679 Punica granatum HOM05D007378 ORTHO05D007577 5.7e-51 206.8 725 32.4
MBI05_g30742_MAGBIO Magnolia biondii HOM05D007378 ORTHO05D007577 2.0e-48 198.4 770 34.0
vmacro21724 Vaccinium macrocarpon HOM05D007378 ORTHO05D007577 1.0e-47 196.1 608 33.9
Rhsim07G0247100 Rhododendron simsii HOM05D007378 ORTHO05D007577 1.7e-47 195.3 749 30.2
Psat5g013200 Pisum sativum HOM05D007378 ORTHO05D007577 2.9e-47 194.5 746 29.6
Cc10_g01700 Coffea canephora HOM05D007378 ORTHO05D007577 8.5e-47 193.0 712 29.9
Lalb_Chr08g0246161 Lupinus albus HOM05D007378 ORTHO05D007577 1.1e-46 192.6 670 30.7
Hund05208 Selenicereus undatus HOM05D007378 ORTHO05D007577 3.2e-46 191.0 763 30.0
CSS0010969 Camellia sinensis var. sinensis HOM05D007378 ORTHO05D007577 9.4e-46 189.5 454 33.5
Lj5g0002996 Lotus japonicus HOM05D007378 ORTHO05D007577 5.7e-43 180.3 726 29.3
Sc15g0005020 Simmondsia chinensis HOM05D007378 ORTHO05D007577 7.5e-43 179.9 753 31.1
Ca_13427_v3 Cicer arietinum L. HOM05D007378 ORTHO05D007577 3.7e-42 177.6 714 29.8
Nn5g30152 Nelumbo nucifera HOM05D007378 ORTHO05D007577 1.8e-41 175.3 806 29.5
PGSC0003DMG400009935 Solanum tuberosum HOM05D007378 ORTHO05D007577 2.7e-40 171.4 731 29.8
Solyc04g081420.4 Solanum lycopersicum HOM05D007378 ORTHO05D007577 5.9e-40 170.2 727 28.9
Aqoxy5G01785 Aquilegia oxysepala HOM05D007378 ORTHO05D007577 1.3e-39 169.1 766 29.2
TPR.G26373 Trifolium pratense HOM05D007378 ORTHO05D007577 1.7e-39 168.7 718 29.4
Sopen04g035030 Solanum pennellii HOM05D007378 ORTHO05D007577 8.5e-39 166.4 728 29.4
Duzib041G0240 Durio zibethinus HOM05D007378 ORTHO05D007577 5.5e-38 163.7 276 43.1
AUR62033831 Chenopodium quinoa HOM05D007378 ORTHO05D007577 9.4e-38 162.9 711 28.7
Nitab4.5_0002561g0040 Nicotiana tabacum HOM05D007378 ORTHO05D007577 4.7e-37 160.6 726 29.1
AUR62035752 Chenopodium quinoa HOM05D007378 ORTHO05D007577 4.0e-36 157.5 638 28.2
Peaxi162Scf00438g00718 Petunia axillaris HOM05D007378 ORTHO05D007577 5.2e-36 157.1 706 28.0
Medtr1g025180 Medicago truncatula HOM05D007378 ORTHO05D007577 4.4e-35 154.1 712 28.1
CAN.G311.27 Capsicum annuum HOM05D007378 ORTHO05D007577 3.7e-34 151.0 707 28.9
Oeu020868.1 Olea europaea HOM05D007378 ORTHO05D007577 2.0e-32 145.2 645 27.4
MSTRG.25246 Avicennia marina HOM05D007378 ORTHO05D007577 1.3e-31 142.5 704 29.0
CSS0024961 Camellia sinensis var. sinensis HOM05D007378 ORTHO05D007577 3.3e-30 137.9 321 36.8
CSS0029124 Camellia sinensis var. sinensis HOM05D007378 ORTHO05D007577 3.0e-28 131.3 295 38.6
Psat6g003040 Pisum sativum HOM05D007378 ORTHO05D007577 2.0e-27 128.6 630 26.3
vmacro04350 Vaccinium macrocarpon HOM05D007378 ORTHO05D007577 6.3e-26 123.6 252 34.5
Sp5g30850 Schrenkiella parvula HOM05D010473 ORTHO05D007577 2.7e-24 118.2 770 27.1
Thhalv10018322m.g Eutrema salsugineum HOM05D010473 ORTHO05D007577 6.6e-23 113.6 546 28.8
AT1G75730 Arabidopsis thaliana HOM05D010473 ORTHO05D007577 8.6e-23 113.2 741 27.4
THA.LOC104814031 Tarenaya hassleriana HOM05D010473 ORTHO05D007577 1.1e-22 112.8 613 26.8
PSO700G0360 Papaver somniferum HOM05D007378 ORTHO05D007577 1.9e-22 112.1 636 27.5
SalBow7G4715 Salvia bowleyana HOM05D007378 ORTHO05D007577 2.5e-22 111.7 545 28.1
PSO170G0005 Papaver somniferum HOM05D007378 ORTHO05D007577 4.3e-22 110.9 635 27.6
AL2G35720 Arabidopsis lyrata HOM05D010473 ORTHO05D007577 4.0e-20 104.4 698 24.9
Carub.0002s2258 Capsella rubella HOM05D010473 ORTHO05D007577 8.9e-20 103.2 747 24.9
TAR625G0788 Trochodendron aralioides HOM05D000628 ORTHO05D001121 1.5e-19 102.4 201 41.8
Atru.chr13.298 Acer truncatum HOM05D007378 ORTHO05D007577 7.5e-19 100.1 94 57.4
Aa31LG4G5960 Aethionema arabicum HOM05D010473 ORTHO05D007577 5.4e-17 94.0 786 24.9
CARHR069140 Cardamine hirsuta HOM05D010473 ORTHO05D007577 6.0e-16 90.5 625 25.0
C06p49680 Brassica napus HOM05D010473 ORTHO05D007577 1.6e-13 82.4 502 26.3
BcaB05g24937 Brassica carinata HOM05D010473 ORTHO05D007577 1.1e-12 79.7 593 25.5
C02p33740 Brassica napus HOM05D010473 ORTHO05D007577 1.1e-12 79.7 173 42.2
BcaC03g15618 Brassica carinata HOM05D010473 ORTHO05D007577 5.2e-12 77.4 213 37.6
BolC6t40007H Brassica oleracea HOM05D010473 ORTHO05D007577 6.8e-12 77.0 504 26.4
BolC2t09331H Brassica oleracea HOM05D010473 ORTHO05D007577 1.3e-10 72.8 125 47.2
Migut.C00828 Erythranthe guttata HOM05D007378 ORTHO05D007577 1.3e-10 72.8 546 25.3
BraA02t07054Z Brassica rapa HOM05D010473 ORTHO05D007577 2.2e-10 72.0 109 48.6
A02p20200 Brassica napus HOM05D010473 ORTHO05D007577 1.1e-09 69.7 101 50.5
Lj4A25T50 Lonicera japonica HOM05D007378 ORTHO05D007577 1.2e-08 66.2 264 29.5
BcaC08g47058 Brassica carinata HOM05D010473 ORTHO05D007577 1.7e-07 62.4 152 36.8
A07p41260 Brassica napus HOM05D010473 ORTHO05D007577 5.1e-07 60.8 184 34.2
SGA_v2.0_scaffold92G28233 Striga asiatica HOM05D007378 ORTHO05D007577 5.1e-07 60.8 125 39.2


User provided reference genes

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