Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0302731 Rosa chinensis HOM05D004999 ORTHO05D007513 1.9e-259 898.7 451 100.0
FvH4_2g38570 Fragaria vesca HOM05D004999 ORTHO05D007513 1.4e-243 845.9 452 93.4
FAN27G0904 Fragaria x ananassa HOM05D004999 ORTHO05D007513 9.7e-240 833.2 452 92.0
FAN15G0085 Fragaria x ananassa HOM05D004999 ORTHO05D007513 2.6e-229 798.5 467 87.8
Prupe.1G366700 Prunus persica HOM05D004999 ORTHO05D007513 1.6e-213 746.1 449 83.3
MD08G1013700 Malus domestica HOM05D004999 ORTHO05D007513 3.7e-207 724.9 449 81.5
FAN20G3168 Fragaria x ananassa HOM05D004999 ORTHO05D007513 7.0e-206 720.7 440 85.0
MD15G1013300 Malus domestica HOM05D004999 ORTHO05D007513 1.0e-204 716.8 449 80.2
GSVIVG01009891001 Vitis vinifera HOM05D004999 ORTHO05D007513 1.2e-186 656.8 459 71.9
Thecc.08G043100 Theobroma cacao HOM05D004999 ORTHO05D007513 3.1e-185 652.1 449 71.9
TWI56G0255 Tripterygium wilfordii HOM05D004999 ORTHO05D007513 4.0e-185 651.7 450 72.9
Dinv39509 Davidia involucrata HOM05D004999 ORTHO05D007513 6.8e-185 651.0 456 72.6
QL02p011429 Quercus lobata HOM05D004999 ORTHO05D007513 6.8e-185 651.0 474 70.5
Gorai.009G195100 Gossypium raimondii HOM05D004999 ORTHO05D007513 2.6e-184 649.0 449 71.5
Gohir.D05G189800 Gossypium hirsutum HOM05D004999 ORTHO05D007513 1.7e-183 646.4 449 71.3
Cfa013940 Carpinus fangiana HOM05D004999 ORTHO05D007513 2.9e-183 645.6 442 73.1
Atru.chr13.305 Acer truncatum HOM05D004999 ORTHO05D007513 1.4e-182 643.3 450 70.7
Gohir.A05G186900 Gossypium hirsutum HOM05D004999 ORTHO05D007513 1.0e-180 637.1 449 70.4
Haze_22624 Corylus avellana HOM05D004999 ORTHO05D007513 1.7e-180 636.3 488 67.2
Ciclev10001119m.g Citrus clementina HOM05D004999 ORTHO05D007513 2.3e-180 636.0 449 71.9
CiPaw.08G065700 Carya illinoinensis HOM05D004999 ORTHO05D007513 1.1e-179 633.6 465 70.1
Duzib041G0279 Durio zibethinus HOM05D004999 ORTHO05D007513 5.6e-179 631.3 450 69.3
TWI36G1418 Tripterygium wilfordii HOM05D004999 ORTHO05D007513 2.8e-178 629.0 451 70.7
TAR381G0667 Trochodendron aralioides HOM05D004999 ORTHO05D007513 1.7e-175 619.8 487 65.7
Duzib093G1482 Durio zibethinus HOM05D004999 ORTHO05D007513 2.9e-175 619.0 453 69.1
CSS0048815 Camellia sinensis var. sinensis HOM05D004999 ORTHO05D007513 4.6e-173 611.7 450 67.8
Ca_13413_v3 Cicer arietinum L. HOM05D004999 ORTHO05D007513 2.3e-172 609.4 448 69.0
Rhsim06G0021900 Rhododendron simsii HOM05D004999 ORTHO05D007513 6.6e-172 607.8 449 68.8
Actinidia15416 Actinidia chinensis HOM05D004999 ORTHO05D007513 2.5e-171 605.9 454 67.6
Lalb_Chr24g0398721 Lupinus albus HOM05D004999 ORTHO05D007513 1.6e-170 603.2 450 69.1
ClCG08G014370 Citrullus lanatus HOM05D004999 ORTHO05D007513 3.6e-170 602.1 456 68.6
CsaV3_2G029460 Cucumis sativus L. HOM05D004999 ORTHO05D007513 8.1e-170 600.9 453 69.1
Manes.05G148301 Manihot esculenta HOM05D004999 ORTHO05D007513 1.8e-169 599.7 426 71.8
Lj5g0025890 Lotus japonicus HOM05D004999 ORTHO05D007513 1.2e-168 597.0 449 67.7
Lj4A25T52 Lonicera japonica HOM05D004999 ORTHO05D007513 3.4e-168 595.5 443 68.4
Potri.002G023300 Populus trichocarpa HOM05D004999 ORTHO05D007513 5.8e-168 594.7 452 67.7
Sed0007289 Sechium edule HOM05D004999 ORTHO05D007513 1.3e-167 593.6 447 68.9
MELO3C011005.2 Cucumis melo HOM05D004999 ORTHO05D007513 3.8e-167 592.0 451 68.5
Dinv31836 Davidia involucrata HOM05D004999 ORTHO05D007513 3.8e-167 592.0 457 68.1
VMungo0647G0227 Vigna mungo HOM05D004999 ORTHO05D007513 5.4e-166 588.2 458 67.0
vmacro21722 Vaccinium macrocarpon HOM05D004999 ORTHO05D007513 2.7e-165 585.9 511 60.9
Glyma.17G257600 Glycine max HOM05D004999 ORTHO05D007513 3.5e-165 585.5 459 67.3
Nn1g05879 Nelumbo nucifera HOM05D004999 ORTHO05D007513 1.0e-164 583.9 450 66.9
Aqoxy5G01776 Aquilegia oxysepala HOM05D004999 ORTHO05D007513 1.7e-164 583.2 499 62.3
Medtr1g024920 Medicago truncatula HOM05D004999 ORTHO05D007513 3.9e-164 582.0 451 66.5
Phvul.001G007200 Phaseolus vulgaris HOM05D004999 ORTHO05D007513 1.1e-163 580.5 456 66.4
Lj5g0016888 Lotus japonicus HOM05D004999 ORTHO05D007513 1.5e-163 580.1 433 68.4
arahy.Tifrunner.gnm1.ann1.A5JBZH Arachis hypogaea HOM05D004999 ORTHO05D007513 1.9e-163 579.7 449 65.9
PGR083G2044 Punica granatum HOM05D004999 ORTHO05D007513 2.8e-162 575.9 453 65.3
CAN.G311.21 Capsicum annuum HOM05D004999 ORTHO05D007513 3.6e-162 575.5 438 66.9
arahy.Tifrunner.gnm1.ann1.BI3E2S Arachis hypogaea HOM05D004999 ORTHO05D007513 6.2e-162 574.7 449 65.5
THA.LOC104806888 Tarenaya hassleriana HOM05D004999 ORTHO05D007513 1.1e-161 573.9 448 66.7
Sc02g0008530 Simmondsia chinensis HOM05D004999 ORTHO05D007513 1.2e-160 570.5 438 66.7
PGSC0003DMG400003779 Solanum tuberosum HOM05D004999 ORTHO05D007513 1.2e-160 570.5 439 66.5
TPR.G30999 Trifolium pratense HOM05D004999 ORTHO05D007513 1.2e-160 570.5 460 64.6
Sopen04g034980 Solanum pennellii HOM05D004999 ORTHO05D007513 2.0e-160 569.7 438 66.2
Solyc04g081360.3 Solanum lycopersicum HOM05D004999 ORTHO05D007513 2.6e-160 569.3 438 66.2
Cc10_g01760 Coffea canephora HOM05D004999 ORTHO05D007513 2.1e-157 559.7 452 64.2
CANSAT01G2959 Cannabis sativa HOM05D004999 ORTHO05D007513 2.7e-157 559.3 448 66.3
SalBow7G4700 Salvia bowleyana HOM05D004999 ORTHO05D007513 5.1e-156 555.1 445 62.7
ECA238G1075 Erigeron canadensis HOM05D004999 ORTHO05D007513 1.5e-155 553.5 449 63.9
Migut.C00822 Erythranthe guttata HOM05D004999 ORTHO05D007513 3.6e-154 548.9 446 62.6
SGA_v2.0_scaffold11G05913 Striga asiatica HOM05D004999 ORTHO05D007513 4.8e-154 548.5 435 64.1
Oeu020873.1 Olea europaea HOM05D004999 ORTHO05D007513 4.0e-153 545.4 435 65.1
EL10Ac6g14553 Beta vulgaris HOM05D004999 ORTHO05D007513 7.6e-152 541.2 445 64.5
Nitab4.5_0001540g0030 Nicotiana tabacum HOM05D004999 ORTHO05D007513 1.3e-151 540.4 438 63.9
PSO700G0267 Papaver somniferum HOM05D004999 ORTHO05D007513 3.8e-151 538.9 470 60.2
PSO170G1336 Papaver somniferum HOM05D004999 ORTHO05D007513 5.4e-150 535.0 464 59.7
AT2G45730 Arabidopsis thaliana HOM05D004999 ORTHO05D007513 3.5e-149 532.3 448 61.8
Carub.0004s2839 Capsella rubella HOM05D004999 ORTHO05D007513 4.6e-149 531.9 440 62.5
Eucgr.F01642 Eucalyptus grandis HOM05D004999 ORTHO05D007513 2.3e-148 529.6 419 65.9
unitig_749.g13859 Utricularia gibba HOM05D004999 ORTHO05D007513 3.9e-148 528.9 441 59.6
Thhalv10001448m.g Eutrema salsugineum HOM05D004999 ORTHO05D007513 8.7e-148 527.7 448 62.5
AL4G44920 Arabidopsis lyrata HOM05D004999 ORTHO05D007513 4.3e-147 525.4 449 61.5
Sp4g27780 Schrenkiella parvula HOM05D004999 ORTHO05D007513 7.4e-147 524.6 451 61.6
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 6.2e-146 521.5 421 64.6
ATR0767G249 Amborella trichopoda HOM05D004999 ORTHO05D007513 2.4e-145 519.6 471 59.0
DCAR_017472 Daucus carota HOM05D004999 ORTHO05D007513 6.9e-145 518.1 437 61.1
COL.COLO4_26158 Corchorus olitorius HOM05D004999 ORTHO05D007513 9.0e-145 517.7 392 67.6
Hund05204 Selenicereus undatus HOM05D004999 ORTHO05D007513 2.6e-144 516.2 512 55.1
A04p33990 Brassica napus HOM05D004999 ORTHO05D007513 7.6e-144 514.6 448 59.6
BraA04t18860Z Brassica rapa HOM05D004999 ORTHO05D007513 7.6e-144 514.6 448 59.6
C04p71790 Brassica napus HOM05D004999 ORTHO05D007513 2.9e-143 512.7 449 59.7
Peaxi162Scf00438g00629 Petunia axillaris HOM05D004999 ORTHO05D007513 2.9e-143 512.7 454 59.7
BcaB01g03255 Brassica carinata HOM05D004999 ORTHO05D007513 4.9e-143 511.9 437 60.6
Sabra02G0019000 Salix brachista HOM05D004999 ORTHO05D007513 1.1e-142 510.8 443 62.1
TPR.G34334 Trifolium pratense HOM05D004999 ORTHO05D007513 1.4e-142 510.4 419 63.7
BcaB02g09016 Brassica carinata HOM05D004999 ORTHO05D007513 4.6e-141 505.4 454 60.4
CARHR140980 Cardamine hirsuta HOM05D004999 ORTHO05D007513 4.6e-141 505.4 438 60.5
Ah.04g153930 Amaranthus hybridus HOM05D004999 ORTHO05D007513 1.3e-140 503.8 441 61.5
BcaC02g07075 Brassica carinata HOM05D004999 ORTHO05D007513 1.3e-140 503.8 447 59.5
BolC4t28677H Brassica oleracea HOM05D004999 ORTHO05D007513 1.3e-140 503.8 447 59.5
HanXRQChr14g0430231 Helianthus annuus HOM05D004999 ORTHO05D007513 1.8e-140 503.4 444 60.6
A03p25340 Brassica napus HOM05D004999 ORTHO05D007513 8.7e-140 501.1 446 58.7
BraA03t11740Z Brassica rapa HOM05D004999 ORTHO05D007513 5.6e-139 498.4 451 58.8
BcaC01g05108 Brassica carinata HOM05D004999 ORTHO05D007513 7.4e-139 498.0 447 59.1
Aa31LG9G12650 Aethionema arabicum HOM05D004999 ORTHO05D007513 8.2e-138 494.6 446 59.0
C03p30250 Brassica napus HOM05D004999 ORTHO05D007513 3.4e-136 489.2 446 57.8
Glyma.14G218500 Glycine max HOM05D004999 ORTHO05D007513 2.1e-133 479.9 385 65.7
AUR62002963 Chenopodium quinoa HOM05D004999 ORTHO05D007513 1.0e-132 477.6 444 59.9
CDE09G1336 Ceratophyllum demersum HOM05D004999 ORTHO05D007513 1.9e-131 473.4 476 54.8
AUR62007769 Chenopodium quinoa HOM05D004999 ORTHO05D007513 2.5e-131 473.0 443 59.4
HPP92_027505 Vanilla planifolia HOM05D004999 ORTHO05D007513 1.6e-130 470.3 469 56.1
Os04g0112300 Oryza sativa ssp. japonica HOM05D004999 ORTHO05D007513 5.3e-129 465.3 464 56.9
Zm00001eb142530 Zea mays HOM05D004999 ORTHO05D007513 2.6e-128 463.0 459 55.8
Actinidia16981 Actinidia chinensis HOM05D004999 ORTHO05D007513 1.1e-113 414.5 451 52.1
BolC3t15374H Brassica oleracea HOM05D004999 ORTHO05D007513 1.0e-111 407.9 379 58.0
Pp3c13_19410 Physcomitrium patens HOM05D004999 ORTHO05D007513 2.5e-110 403.3 453 49.2
Potri.005G238200 Populus trichocarpa HOM05D004999 ORTHO05D007513 4.8e-106 389.0 299 69.6
MBI09_g25164_MAGBIO Magnolia biondii HOM05D004999 ORTHO05D007513 1.2e-104 384.4 358 59.5
Psat5g146560 Pisum sativum HOM05D004999 ORTHO05D007513 1.1e-102 377.9 297 66.7
AagrBONN_evm.TU.Sc2ySwM_344.355 Anthoceros agrestis HOM05D004999 ORTHO05D007513 3.7e-98 362.8 485 43.7
Mapoly0050s0121 Marchantia polymorpha HOM05D004999 ORTHO05D007513 9.1e-97 358.2 521 41.1
Cpa.g.sc8.166 Carica papaya HOM05D004999 ORTHO05D007513 2.1e-93 347.1 368 54.1
SMO367G0765 Selaginella moellendorffii HOM05D004999 ORTHO05D007513 1.7e-90 337.4 474 42.6
HPP92_022409 Vanilla planifolia HOM05D004999 ORTHO05D007513 4.1e-89 332.8 276 62.3
CBR_g45432 Chara braunii HOM05D004999 ORTHO05D007513 4.0e-76 289.7 609 33.3
Oeu054699.1 Olea europaea HOM05D004999 ORTHO05D007513 3.9e-71 273.1 522 36.8
MCO06G251 Micromonas commoda HOM05D004999 ORTHO05D007513 4.7e-61 239.6 454 35.5
PRCOL_00001952 Prasinoderma coloniale HOM05D004999 ORTHO05D007513 2.9e-58 230.3 452 32.1
Cre12.g543100 Chlamydomonas reinhardtii HOM05D004999 ORTHO05D007513 1.5e-51 208.0 494 32.4
Thecc.08G043300 Theobroma cacao HOM05D004999 ORTHO05D007513 3.6e-45 186.8 247 47.8
Zm00001eb363800 Zea mays HOM05D004999 ORTHO05D007513 8.1e-45 185.7 161 61.5
Thhalv10014705m.g Eutrema salsugineum HOM05D004999 ORTHO05D007513 1.5e-43 181.4 247 44.5
Psat6g004000 Pisum sativum HOM05D000009 ORTHO05D000008 1.3e-34 151.8 223 42.2
AL825U10010 Arabidopsis lyrata HOM05D004999 ORTHO05D007513 7.6e-27 125.9 118 57.6
BolC9t55805H Brassica oleracea HOM05D004999 ORTHO05D040156 4.2e-25 120.2 191 46.1
C09p29400 Brassica napus HOM05D004999 ORTHO05D040156 9.3e-25 119.0 191 45.5
C08p30330 Brassica napus HOM05D004999 ORTHO05D007513 2.8e-21 107.5 173 43.4
SEGI_23149 Sequoiadendron giganteum HOM05D004999 ORTHO05D007513 2.4e-20 104.4 87 64.4
SEGI_05081 Sequoiadendron giganteum HOM05D004999 ORTHO05D007513 5.8e-19 99.8 73 60.3
SEGI_39734 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 1.3e-18 98.6 233 35.2
MBI18_g38864_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D012920 5.5e-17 93.2 128 44.5
MBI17_g46501_MAGBIO Magnolia biondii HOM05D004999 ORTHO05D012920 4.6e-16 90.1 85 52.9
C02p41440 Brassica napus HOM05D004999 ORTHO05D024529 2.0e-11 74.7 111 43.2
CAN.G566.39 Capsicum annuum HOM05D004999 ORTHO05D007513 4.5e-11 73.6 115 43.5
FAN24G3067 Fragaria x ananassa HOM05D004999 ORTHO05D209228 4.5e-11 73.6 59 69.5
BcaC01g01121 Brassica carinata HOM05D004999 ORTHO05D024221 1.7e-10 71.6 95 45.3
C04p17480 Brassica napus HOM05D004999 ORTHO05D024529 6.5e-10 69.7 113 41.6
A02p34280 Brassica napus HOM05D004999 ORTHO05D021597 4.6e-08 63.5 146 32.2
BolC4t23296H Brassica oleracea HOM05D004999 ORTHO05D024529 4.6e-08 63.5 93 44.1
Migut.C00804 Erythranthe guttata HOM05D004999 ORTHO05D007513 7.9e-08 62.8 38 71.1
BolC4t24340H Brassica oleracea HOM05D004999 ORTHO05D024529 1.8e-07 61.6 93 43.0
BolC3t21145H Brassica oleracea HOM05D004999 ORTHO05D024221 3.9e-07 60.5 79 49.4
SalBow3G3141 Salvia bowleyana HOM05D004999 ORTHO05D360697 8.8e-07 59.3 34 76.5
BolC4t25844H Brassica oleracea HOM05D004999 ORTHO05D021597 2.5e-06 57.8 51 52.9


User provided reference genes

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