Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0302671 Rosa chinensis HOM05D005146 ORTHO05D006752 7.6e-155 550.4 274 100.0
FAN27G1976 Fragaria x ananassa HOM05D005146 ORTHO05D006752 4.6e-152 541.2 274 97.8
FvH4_2g38650 Fragaria vesca HOM05D005146 ORTHO05D006752 6.0e-152 540.8 274 97.8
FAN15G2679 Fragaria x ananassa HOM05D005146 ORTHO05D006752 7.9e-152 540.4 274 97.8
FAN20G2808 Fragaria x ananassa HOM05D005146 ORTHO05D006752 1.9e-150 535.8 274 97.1
MD15G1013600 Malus domestica HOM05D005146 ORTHO05D006752 1.1e-145 520.0 271 93.4
Prupe.1G367100 Prunus persica HOM05D005146 ORTHO05D006752 1.2e-144 516.5 271 92.3
MD08G1014100 Malus domestica HOM05D005146 ORTHO05D006752 3.3e-142 508.4 271 91.1
Cfa006669 Carpinus fangiana HOM05D005146 ORTHO05D006752 2.5e-137 492.3 271 88.9
Haze_04102 Corylus avellana HOM05D005146 ORTHO05D006752 7.2e-137 490.7 271 88.2
CiPaw.07G151400 Carya illinoinensis HOM05D005146 ORTHO05D006752 2.7e-136 488.8 271 86.7
CANSAT11G0704 Cannabis sativa HOM05D005146 ORTHO05D006752 1.0e-135 486.9 271 86.3
GSVIVG01009887001 Vitis vinifera HOM05D005146 ORTHO05D006752 1.3e-135 486.5 271 86.7
QL02p011373 Quercus lobata HOM05D005146 ORTHO05D006752 2.3e-135 485.7 271 86.0
Rhsim06G0022400 Rhododendron simsii HOM05D005146 ORTHO05D006752 1.9e-134 482.6 270 86.3
Atru.chr13.312 Acer truncatum HOM05D005146 ORTHO05D006752 5.7e-134 481.1 271 84.9
Ciclev10002090m.g Citrus clementina HOM05D005146 ORTHO05D006752 1.3e-133 479.9 271 85.6
Cc10_g01800 Coffea canephora HOM05D005146 ORTHO05D006752 2.8e-133 478.8 271 85.6
Manes.11G065850 Manihot esculenta HOM05D005146 ORTHO05D006752 2.8e-133 478.8 271 84.1
DCAR_009928 Daucus carota HOM05D005146 ORTHO05D006752 3.7e-133 478.4 270 85.2
Potri.002G023700 Populus trichocarpa HOM05D005146 ORTHO05D006752 4.8e-133 478.0 271 83.0
Actinidia15413 Actinidia chinensis HOM05D005146 ORTHO05D006752 6.3e-133 477.6 270 85.9
Sp7g29580 Schrenkiella parvula HOM05D005146 ORTHO05D006752 6.3e-133 477.6 272 84.2
BcaNung05185 Brassica carinata HOM05D005146 ORTHO05D006752 8.2e-133 477.2 272 83.8
CARHR239690 Cardamine hirsuta HOM05D005146 ORTHO05D006752 8.2e-133 477.2 272 84.9
Dinv31832 Davidia involucrata HOM05D005146 ORTHO05D006752 8.2e-133 477.2 270 85.9
BcaC09g51970 Brassica carinata HOM05D005146 ORTHO05D006752 1.1e-132 476.9 272 83.8
BolC1t00708H Brassica oleracea HOM05D005146 ORTHO05D006752 1.1e-132 476.9 272 83.8
Carub.0007s0877 Capsella rubella HOM05D005146 ORTHO05D006752 1.1e-132 476.9 272 84.2
Manes.05G148600 Manihot esculenta HOM05D005146 ORTHO05D006752 1.4e-132 476.5 271 84.1
AT4G31790 Arabidopsis thaliana HOM05D005146 ORTHO05D006752 1.8e-132 476.1 272 84.6
Gohir.A08G010500 Gossypium hirsutum HOM05D005146 ORTHO05D006752 2.4e-132 475.7 271 83.0
Medtr3g113750 Medicago truncatula HOM05D005146 ORTHO05D006752 2.4e-132 475.7 271 84.1
Thecc.09G245400 Theobroma cacao HOM05D005146 ORTHO05D006752 2.4e-132 475.7 271 83.4
TWI56G0936 Tripterygium wilfordii HOM05D005146 ORTHO05D006752 2.4e-132 475.7 271 84.5
BraA01t00610Z Brassica rapa HOM05D005146 ORTHO05D006752 3.1e-132 475.3 272 83.5
PGSC0003DMG400003775 Solanum tuberosum HOM05D005146 ORTHO05D006752 3.1e-132 475.3 270 83.7
CAN.G311.14 Capsicum annuum HOM05D005146 ORTHO05D006752 4.1e-132 474.9 270 83.7
A01p06490 Brassica napus HOM05D005146 ORTHO05D006752 6.9e-132 474.2 272 83.5
Solyc04g081310.3 Solanum lycopersicum HOM05D005146 ORTHO05D006752 6.9e-132 474.2 270 83.7
Sopen04g034930 Solanum pennellii HOM05D005146 ORTHO05D006752 6.9e-132 474.2 270 83.7
THA.LOC104825772 Tarenaya hassleriana HOM05D005146 ORTHO05D006752 9.1e-132 473.8 271 82.3
Gohir.D08G020900 Gossypium hirsutum HOM05D005146 ORTHO05D006752 1.2e-131 473.4 271 83.0
Thhalv10025950m.g Eutrema salsugineum HOM05D005146 ORTHO05D006752 1.5e-131 473.0 272 84.6
C01p07160 Brassica napus HOM05D005146 ORTHO05D006752 2.0e-131 472.6 272 83.5
Nitab4.5_0001540g0020 Nicotiana tabacum HOM05D005146 ORTHO05D006752 2.0e-131 472.6 270 83.3
Sabra02G0019300 Salix brachista HOM05D005146 ORTHO05D006752 2.0e-131 472.6 271 82.3
AL7G20220 Arabidopsis lyrata HOM05D005146 ORTHO05D006752 2.6e-131 472.2 272 84.2
CsaV3_2G029420 Cucumis sativus L. HOM05D005146 ORTHO05D006752 3.4e-131 471.9 272 82.4
ECA238G2776 Erigeron canadensis HOM05D005146 ORTHO05D006752 3.4e-131 471.9 271 82.3
TPR.G34539 Trifolium pratense HOM05D005146 ORTHO05D006752 3.4e-131 471.9 271 81.9
PSO700G0287 Papaver somniferum HOM05D005146 ORTHO05D006752 4.5e-131 471.5 270 83.3
Aa31LG2G18510 Aethionema arabicum HOM05D005146 ORTHO05D006752 1.3e-130 469.9 272 82.7
Nn6g32362 Nelumbo nucifera HOM05D005146 ORTHO05D006752 1.3e-130 469.9 270 83.3
Cpa.g.sc1059.3 Carica papaya HOM05D005146 ORTHO05D006752 1.7e-130 469.5 271 82.7
Ca_14210_v3 Cicer arietinum L. HOM05D005146 ORTHO05D006752 1.7e-130 469.5 271 81.9
Lsat_1_v5_gn_2_8601 Lactuca sativa HOM05D005146 ORTHO05D006752 1.7e-130 469.5 271 81.5
PGR083G0855 Punica granatum HOM05D005146 ORTHO05D006752 1.7e-130 469.5 271 83.0
PSO170G4907 Papaver somniferum HOM05D005146 ORTHO05D006752 2.9e-130 468.8 269 83.3
VMungo0251G0853 Vigna mungo HOM05D005146 ORTHO05D006752 2.9e-130 468.8 271 82.3
Lalb_Chr23g0266181 Lupinus albus HOM05D005146 ORTHO05D006752 1.4e-129 466.5 271 81.9
Psat5g013440 Pisum sativum HOM05D005146 ORTHO05D006752 1.4e-129 466.5 271 81.2
Glyma.07G217500 Glycine max HOM05D005146 ORTHO05D006752 2.5e-129 465.7 271 82.3
Eucgr.F01641 Eucalyptus grandis HOM05D005146 ORTHO05D006752 5.5e-129 464.5 271 81.9
Phvul.001G002400 Phaseolus vulgaris HOM05D005146 ORTHO05D006752 5.5e-129 464.5 271 82.7
Glyma.20G014100 Glycine max HOM05D005146 ORTHO05D006752 7.2e-129 464.2 271 82.3
Sed0001191 Sechium edule HOM05D005146 ORTHO05D006752 7.2e-129 464.2 272 79.8
HanXRQChr06g0183611 Helianthus annuus HOM05D005146 ORTHO05D006752 2.1e-128 462.6 272 80.1
CSS0007392 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 4.6e-128 461.5 270 83.0
CSS0032974 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 4.6e-128 461.5 270 83.0
Lj1g0002754 Lotus japonicus HOM05D005146 ORTHO05D006752 4.6e-128 461.5 271 82.3
Migut.N03153 Erythranthe guttata HOM05D005146 ORTHO05D006752 1.4e-127 459.9 271 80.4
EL10Ac6g13895 Beta vulgaris HOM05D005146 ORTHO05D006752 8.8e-127 457.2 304 75.7
Hund05199 Selenicereus undatus HOM05D005146 ORTHO05D006752 9.7e-126 453.8 270 80.4
SGA_v2.0_scaffold12G05971 Striga asiatica HOM05D005146 ORTHO05D006752 8.2e-125 450.7 271 78.2
ATR0797G002 Amborella trichopoda HOM05D005146 ORTHO05D006752 3.1e-124 448.7 270 79.3
Ah.08g209140 Amaranthus hybridus HOM05D005146 ORTHO05D006752 5.3e-124 448.0 302 74.2
Oeu020876.1 Olea europaea HOM05D005146 ORTHO05D006752 5.3e-124 448.0 262 81.7
arahy.Tifrunner.gnm1.ann1.RM6BI2 Arachis hypogaea HOM05D005146 ORTHO05D006752 6.9e-124 447.6 271 78.6
COL.COLO4_37538 Corchorus olitorius HOM05D005146 ORTHO05D006752 6.9e-124 447.6 257 82.9
Aqoxy5G01768 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 1.2e-123 446.8 270 78.9
arahy.Tifrunner.gnm1.ann1.DQ6KFY Arachis hypogaea HOM05D005146 ORTHO05D006752 1.5e-123 446.4 271 78.6
AUR62019460 Chenopodium quinoa HOM05D005146 ORTHO05D006752 2.0e-123 446.0 270 80.0
arahy.Tifrunner.gnm1.ann1.VN499F Arachis hypogaea HOM05D005146 ORTHO05D006752 1.0e-122 443.7 271 78.2
Os03g0355800 Oryza sativa ssp. japonica HOM05D005146 ORTHO05D006752 1.3e-122 443.4 270 77.4
RcHm_v2.0_Chr7g0221331 Rosa chinensis HOM05D005146 ORTHO05D006752 3.8e-122 441.8 274 83.6
Lj5g0000481 Lotus japonicus HOM05D005146 ORTHO05D006752 3.2e-121 438.7 271 77.5
unitig_746.g26814 Utricularia gibba HOM05D005146 ORTHO05D006752 3.2e-121 438.7 270 76.7
HPP92_027733 Vanilla planifolia HOM05D005146 ORTHO05D006752 7.2e-121 437.6 271 75.6
Duzib150G0501 Durio zibethinus HOM05D005146 ORTHO05D006752 2.7e-120 435.6 271 78.6
ClCG08G014400 Citrullus lanatus HOM05D005146 ORTHO05D006752 4.7e-120 434.9 272 76.1
Zm00001eb017150 Zea mays HOM05D005146 ORTHO05D006752 7.9e-120 434.1 270 75.6
arahy.Tifrunner.gnm1.ann1.NX94TN Arachis hypogaea HOM05D005146 ORTHO05D006752 1.5e-118 429.9 301 70.4
Aqoxy6G00492 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 4.4e-118 428.3 261 77.8
MBI09_g15694_MAGBIO Magnolia biondii HOM05D005146 ORTHO05D006752 1.4e-116 423.3 381 59.1
MELO3C011001.2 Cucumis melo HOM05D005146 ORTHO05D006752 1.8e-116 422.9 284 73.2
Gorai.004G015300 Gossypium raimondii HOM05D005146 ORTHO05D006752 1.8e-116 422.9 271 75.6
Mapoly0107s0028 Marchantia polymorpha HOM05D005146 ORTHO05D006752 5.3e-116 421.4 271 72.3
AagrBONN_evm.TU.Sc2ySwM_117.1420 Anthoceros agrestis HOM05D005146 ORTHO05D006752 2.6e-115 419.1 274 70.8
Pp3c25_4490 Physcomitrium patens HOM05D005146 ORTHO05D006752 1.0e-114 417.2 271 72.0
AagrBONN_evm.TU.Sc2ySwM_368.2751 Anthoceros agrestis HOM05D005146 ORTHO05D006752 2.9e-114 415.6 274 70.4
Peaxi162Scf00438g00626 Petunia axillaris HOM05D005146 ORTHO05D006752 1.5e-113 413.3 270 75.6
CDE05G1835 Ceratophyllum demersum HOM05D005146 ORTHO05D006752 2.6e-110 402.5 241 80.1
SalBow3G2629 Salvia bowleyana HOM05D005146 ORTHO05D006752 9.7e-110 400.6 241 77.6
vmacro21720 Vaccinium macrocarpon HOM05D005146 ORTHO05D006752 1.8e-108 396.4 221 86.0
SMO146G0393 Selaginella moellendorffii HOM05D005146 ORTHO05D006752 1.2e-107 393.7 273 67.0
Hma1.2p1_0638F.1_g193760 Hydrangea macrophylla HOM05D005146 ORTHO05D006752 1.7e-106 389.8 220 85.0
HPP92_026026 Vanilla planifolia HOM05D005146 ORTHO05D006752 2.2e-106 389.4 244 74.6
CSS0032399 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 1.2e-99 367.1 251 73.7
CBR_g41468 Chara braunii HOM05D005146 ORTHO05D006752 7.7e-99 364.4 271 63.5
Cre05.g233300 Chlamydomonas reinhardtii HOM05D005146 ORTHO05D006752 8.6e-98 360.9 271 64.9
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 1.9e-97 359.8 222 77.5
TAR628G0140 Trochodendron aralioides HOM05D005146 ORTHO05D006752 8.0e-96 354.4 196 86.2
C09p44220 Brassica napus HOM05D005146 ORTHO05D006752 1.7e-93 346.7 272 65.1
BolC8t49001H Brassica oleracea HOM05D005146 ORTHO05D006752 8.3e-93 344.4 271 66.1
C08p13630 Brassica napus HOM05D005146 ORTHO05D006752 3.1e-92 342.4 271 65.7
MCO08G273 Micromonas commoda HOM05D005146 ORTHO05D006752 2.3e-90 336.3 271 59.4
PRCOL_00004436 Prasinoderma coloniale HOM05D005146 ORTHO05D006752 7.3e-89 331.3 288 58.3
BcaC04g20385 Brassica carinata HOM05D005146 ORTHO05D006752 5.7e-86 321.6 273 61.9
Sc26g0004380 Simmondsia chinensis HOM05D005146 ORTHO05D006752 1.1e-81 307.4 178 79.8
BcaC04g20389 Brassica carinata HOM05D005146 ORTHO05D006752 1.4e-79 300.4 272 58.5
Oeu039057.1 Olea europaea HOM05D005146 ORTHO05D006752 1.1e-76 290.8 240 63.3
Haze_26822 Corylus avellana HOM05D005146 ORTHO05D006752 1.4e-76 290.4 276 51.8
ATR0816G001 Amborella trichopoda HOM05D005146 ORTHO05D006752 6.6e-74 281.6 168 79.8
MSTRG.25237 Avicennia marina HOM05D005146 ORTHO05D006752 1.1e-68 264.2 152 79.6
Lj4A797T61 Lonicera japonica HOM05D005146 ORTHO05D006752 2.7e-67 259.6 152 83.6
Medtr1g107520 Medicago truncatula HOM05D005146 ORTHO05D006752 2.3e-66 256.5 165 77.6
AUR62036170 Chenopodium quinoa HOM05D005146 ORTHO05D006752 2.8e-64 249.6 205 63.9
BolC9t57294H Brassica oleracea HOM05D005146 ORTHO05D006752 2.3e-58 229.9 154 74.0
BcaC04g20387 Brassica carinata HOM05D005146 ORTHO05D006752 2.1e-56 223.4 273 48.7
Duzib170G0783 Durio zibethinus HOM05D005146 ORTHO05D006752 2.1e-51 206.8 271 45.8
CSS0002428 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 6.0e-51 205.3 270 47.8
MELO3C029148.2 Cucumis melo HOM05D005146 ORTHO05D006752 4.5e-46 189.1 180 55.6
BolC8t52160H Brassica oleracea HOM05D005146 ORTHO05D032927 4.5e-38 162.5 265 43.0
Medtr3g114210 Medicago truncatula HOM05D005146 ORTHO05D006752 7.6e-38 161.8 148 63.5
BcaC07g41610 Brassica carinata HOM05D005146 ORTHO05D032927 1.4e-36 157.5 269 41.6
Lj4A797T60 Lonicera japonica HOM05D005146 ORTHO05D006752 7.9e-35 151.8 90 77.8
C08p46100 Brassica napus HOM05D005146 ORTHO05D032927 4.8e-32 142.5 98 74.5
BcaC04g20388 Brassica carinata HOM05D005146 ORTHO05D006752 6.9e-31 138.7 185 45.9
Lsat_1_v5_gn_2_8581 Lactuca sativa HOM05D000202 ORTHO05D000117 3.8e-29 132.9 135 49.6
Lsat_1_v5_gn_2_8661 Lactuca sativa HOM05D000202 ORTHO05D000117 3.2e-28 129.8 135 48.9
Oeu039054.1 Olea europaea HOM05D000784 ORTHO05D000116 1.2e-27 127.9 79 70.9
SEGI_30125 Sequoiadendron giganteum HOM05D005146 ORTHO05D006752 1.6e-27 127.5 92 67.4
MELO3C032066.2 Cucumis melo HOM05D005146 ORTHO05D006752 1.0e-18 98.2 73 65.8
CAN.G1688.3 Capsicum annuum HOM05D005146 ORTHO05D011342 8.8e-18 95.1 56 75.0
BcaNung04119 Brassica carinata HOM05D001941 ORTHO05D002198 1.4e-12 77.8 45 77.8
Actinidia16979 Actinidia chinensis HOM05D005146 ORTHO05D006752 4.7e-11 72.8 78 50.0
MELO3C033356.2 Cucumis melo HOM05D005146 ORTHO05D166957 1.1e-09 68.2 49 65.3
Cfa017682 Carpinus fangiana HOM05D005146 ORTHO05D123472 2.6e-06 57.0 45 68.9


User provided reference genes

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