Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0302511 Rosa chinensis HOM05D004818 ORTHO05D005444 1.4e-20 102.1 54 100.0
Sed0012644 Sechium edule HOM05D004818 ORTHO05D005444 7.2e-17 89.7 54 87.0
CiPaw.09G132900 Carya illinoinensis HOM05D004818 ORTHO05D005444 1.2e-16 89.0 54 87.0
Sed0015314 Sechium edule HOM05D004818 ORTHO05D005444 1.6e-16 88.6 54 85.2
ClCG05G018500 Citrullus lanatus HOM05D004818 ORTHO05D005444 6.1e-16 86.7 54 83.3
COL.COLO4_10615 Corchorus olitorius HOM05D004818 ORTHO05D005444 1.4e-15 85.5 54 81.5
Lalb_Chr03g0025281 Lupinus albus HOM05D004818 ORTHO05D005444 1.4e-15 85.5 54 81.5
Eucgr.G01742 Eucalyptus grandis HOM05D004818 ORTHO05D005444 1.8e-15 85.1 54 83.3
FAN15G1739 Fragaria x ananassa HOM05D004818 ORTHO05D005444 2.3e-15 84.7 54 83.3
Ciclev10003088m.g Citrus clementina HOM05D004818 ORTHO05D005444 3.0e-15 84.3 54 79.6
TAR625G1092 Trochodendron aralioides HOM05D004818 ORTHO05D005444 3.0e-15 84.3 54 83.3
CiPaw.05G074500 Carya illinoinensis HOM05D004818 ORTHO05D005444 4.0e-15 84.0 54 81.5
Thecc.02G073200 Theobroma cacao HOM05D004818 ORTHO05D005444 4.0e-15 84.0 54 81.5
TAR381G0131 Trochodendron aralioides HOM05D004818 ORTHO05D005444 4.0e-15 84.0 54 83.3
Glyma.12G036000 Glycine max HOM05D004818 ORTHO05D005444 5.2e-15 83.6 54 81.5
Gohir.A13G086700 Gossypium hirsutum HOM05D004818 ORTHO05D005444 5.2e-15 83.6 54 81.5
Potri.004G164066 Populus trichocarpa HOM05D004818 ORTHO05D005444 5.2e-15 83.6 54 81.5
RcHm_v2.0_Chr6g0268521 Rosa chinensis HOM05D004818 ORTHO05D005444 5.2e-15 83.6 54 81.5
Duzib052G0912 Durio zibethinus HOM05D004818 ORTHO05D005444 6.8e-15 83.2 54 79.6
CANSAT11G1677 Cannabis sativa HOM05D004818 ORTHO05D005444 8.9e-15 82.8 54 79.6
Gohir.A12G040700 Gossypium hirsutum HOM05D004818 ORTHO05D005444 8.9e-15 82.8 54 81.5
Gohir.D13G090600 Gossypium hirsutum HOM05D004818 ORTHO05D005444 8.9e-15 82.8 54 81.5
Gorai.001G244100 Gossypium raimondii HOM05D004818 ORTHO05D005444 8.9e-15 82.8 54 81.5
VMungo1127G0843 Vigna mungo HOM05D004818 ORTHO05D005444 8.9e-15 82.8 54 81.5
Eucgr.I01336 Eucalyptus grandis HOM05D004818 ORTHO05D005444 1.2e-14 82.4 54 79.6
Cfa005123 Carpinus fangiana HOM05D004818 ORTHO05D005444 1.5e-14 82.0 54 79.6
HanXRQChr17g0551041 Helianthus annuus HOM05D004818 ORTHO05D005444 1.5e-14 82.0 54 79.6
MD00G1066700 Malus domestica HOM05D004818 ORTHO05D005444 1.5e-14 82.0 54 81.5
Ca_09579_v3 Cicer arietinum L. HOM05D004818 ORTHO05D005444 2.0e-14 81.6 54 75.9
Ciclev10029771m.g Citrus clementina HOM05D004818 ORTHO05D005444 2.0e-14 81.6 54 75.9
Duzib248G1544 Durio zibethinus HOM05D004818 ORTHO05D005444 2.0e-14 81.6 54 79.6
Lj3g0020574 Lotus japonicus HOM05D004818 ORTHO05D005444 2.0e-14 81.6 54 77.8
MD10G1061700 Malus domestica HOM05D004818 ORTHO05D005444 2.0e-14 81.6 54 79.6
Prupe.1G368600 Prunus persica HOM05D004818 ORTHO05D005444 2.0e-14 81.6 54 81.5
TWI31G1300 Tripterygium wilfordii HOM05D004818 ORTHO05D005444 2.0e-14 81.6 54 79.6
TWI79G1427 Tripterygium wilfordii HOM05D004818 ORTHO05D005444 2.0e-14 81.6 54 79.6
TAR628G1422 Trochodendron aralioides HOM05D004818 ORTHO05D005444 2.0e-14 81.6 54 79.6
Gohir.D04G165300 Gossypium hirsutum HOM05D004818 ORTHO05D005444 2.6e-14 81.3 54 79.6
PGR142G0584 Punica granatum HOM05D004818 ORTHO05D005444 2.6e-14 81.3 54 77.8
Phvul.011G038100 Phaseolus vulgaris HOM05D004818 ORTHO05D005444 3.4e-14 80.9 54 79.6
Atru.chr5.3177 Acer truncatum HOM05D004818 ORTHO05D005444 4.4e-14 80.5 54 77.8
Lalb_Chr19g0139031 Lupinus albus HOM05D004818 ORTHO05D005444 4.4e-14 80.5 54 79.6
Medtr4g072130 Medicago truncatula HOM05D004818 ORTHO05D005444 4.4e-14 80.5 52 78.8
Gohir.A04G123300 Gossypium hirsutum HOM05D004818 ORTHO05D005444 5.7e-14 80.1 54 77.8
Manes.18G015600 Manihot esculenta HOM05D004818 ORTHO05D005444 5.7e-14 80.1 54 75.9
Sabra02G0020200 Salix brachista HOM05D004047 ORTHO05D004772 5.7e-14 80.1 54 77.8
Lalb_Chr01g0002101 Lupinus albus HOM05D004818 ORTHO05D005444 7.5e-14 79.7 54 75.9
Solyc01g110540.3 Solanum lycopersicum HOM05D004818 ORTHO05D005444 7.5e-14 79.7 54 79.6
PGSC0003DMG400001656 Solanum tuberosum HOM05D004818 ORTHO05D005444 7.5e-14 79.7 54 79.6
Lsat_1_v5_gn_4_67521 Lactuca sativa HOM05D004818 ORTHO05D005444 9.8e-14 79.3 54 77.8
Cpa.g.sc150.3 Carica papaya HOM05D004818 ORTHO05D005444 1.7e-13 78.6 54 77.8
MELO3C013404.2 Cucumis melo HOM05D004818 ORTHO05D005444 1.7e-13 78.6 54 77.8
CsaV3_7G000550 Cucumis sativus L. HOM05D004818 ORTHO05D005444 1.7e-13 78.6 54 77.8
Potri.002G024900 Populus trichocarpa HOM05D004818 ORTHO05D005444 1.7e-13 78.6 54 75.9
Potri.009G125832 Populus trichocarpa HOM05D004818 ORTHO05D005444 1.7e-13 78.6 56 78.6
Sed0018748 Sechium edule HOM05D004818 ORTHO05D005444 1.7e-13 78.6 54 77.8
FAN20G1549 Fragaria x ananassa HOM05D004818 ORTHO05D005444 2.2e-13 78.2 77 62.3
Lsat_1_v5_gn_8_127140 Lactuca sativa HOM05D004818 ORTHO05D005444 2.2e-13 78.2 54 75.9
Manes.04G082300 Manihot esculenta HOM05D004818 ORTHO05D005444 2.2e-13 78.2 54 74.1
CiPaw.06G127200 Carya illinoinensis HOM05D004818 ORTHO05D005444 2.8e-13 77.8 54 77.8
PGSC0003DMG400004424 Solanum tuberosum HOM05D004818 ORTHO05D005444 2.8e-13 77.8 54 77.8
TWI75G0908 Tripterygium wilfordii HOM05D004818 ORTHO05D005444 2.8e-13 77.8 52 78.8
Aa31LG5G12500 Aethionema arabicum HOM05D004818 ORTHO05D005444 4.9e-13 77.0 54 77.8
GSVIVG01009863001 Vitis vinifera HOM05D004818 ORTHO05D005444 4.9e-13 77.0 67 68.7
Sed0003347 Sechium edule HOM05D004818 ORTHO05D005444 6.3e-13 76.6 54 75.9
CAN.G104.4 Capsicum annuum HOM05D004818 ORTHO05D005444 8.3e-13 76.3 54 75.9
Carub.0003s0104 Capsella rubella HOM05D004818 ORTHO05D005444 1.1e-12 75.9 54 75.9
Sabra09G0096800 Salix brachista HOM05D004818 ORTHO05D005444 1.1e-12 75.9 56 75.0
AL3G11130 Arabidopsis lyrata HOM05D004818 ORTHO05D005444 1.4e-12 75.5 54 74.1
Prupe.8G082400 Prunus persica HOM05D004818 ORTHO05D005444 1.4e-12 75.5 54 77.8
Migut.N01294 Erythranthe guttata HOM05D004818 ORTHO05D005444 2.4e-12 74.7 54 74.1
BcaC05g30384 Brassica carinata HOM05D004818 ORTHO05D005444 3.2e-12 74.3 54 74.1
A03p32690 Brassica napus HOM05D004818 ORTHO05D005444 3.2e-12 74.3 54 74.1
A05p44830 Brassica napus HOM05D004818 ORTHO05D005444 3.2e-12 74.3 54 74.1
C03p39790 Brassica napus HOM05D004818 ORTHO05D005444 3.2e-12 74.3 54 74.1
BolC3t16243H Brassica oleracea HOM05D004818 ORTHO05D005444 3.2e-12 74.3 54 74.1
CAN.G1329.6 Capsicum annuum HOM05D004818 ORTHO05D005444 3.2e-12 74.3 54 75.9
Migut.B00126 Erythranthe guttata HOM05D004818 ORTHO05D005444 3.2e-12 74.3 54 70.4
Potri.005G236500 Populus trichocarpa HOM05D004818 ORTHO05D005444 3.2e-12 74.3 54 74.1
Sp3g00990 Schrenkiella parvula HOM05D004818 ORTHO05D005444 3.2e-12 74.3 54 74.1
FAN15G2220 Fragaria x ananassa HOM05D012912 ORTHO05D005444 5.4e-12 73.6 42 88.1
THA.LOC104821019 Tarenaya hassleriana HOM05D004818 ORTHO05D005444 7.0e-12 73.2 54 74.1
BcaC05g30492 Brassica carinata HOM05D004818 ORTHO05D005444 9.2e-12 72.8 54 72.2
BolC5t35118H Brassica oleracea HOM05D004818 ORTHO05D005444 9.2e-12 72.8 54 72.2
MELO3C003769.2 Cucumis melo HOM05D004818 ORTHO05D005444 9.2e-12 72.8 54 72.2
Duzib132G0136 Durio zibethinus HOM05D004818 ORTHO05D005444 1.2e-11 72.4 58 72.4
FvH4_2g40200 Fragaria vesca HOM05D004818 ORTHO05D005444 1.2e-11 72.4 42 85.7
Nn5g29275 Nelumbo nucifera HOM05D004818 ORTHO05D005444 1.6e-11 72.0 54 72.2
BraA03t12437Z Brassica rapa HOM05D004818 ORTHO05D005444 2.7e-11 71.2 54 72.2
Thhalv10021899m.g Eutrema salsugineum HOM05D004818 ORTHO05D005444 2.7e-11 71.2 54 72.2
Atru.chr10.813 Acer truncatum HOM05D004818 ORTHO05D005444 5.9e-11 70.1 53 66.0
FvH4_2g40204 Fragaria vesca HOM05D004818 ORTHO05D005444 1.0e-10 69.3 42 83.3
Glyma.09G222500 Glycine max HOM05D004818 ORTHO05D005444 1.3e-10 68.9 78 55.1
C09p75420 Brassica napus HOM05D004818 ORTHO05D005444 2.3e-10 68.2 58 69.0
Nn6g32305 Nelumbo nucifera HOM05D004818 ORTHO05D005444 2.3e-10 68.2 39 89.7
SalBow3G2817 Salvia bowleyana HOM05D004818 ORTHO05D005444 2.9e-10 67.8 48 72.9
Sp6g28750 Schrenkiella parvula HOM05D004818 ORTHO05D005444 2.9e-10 67.8 54 68.5
Hund06293 Selenicereus undatus HOM05D004818 ORTHO05D005444 3.9e-10 67.4 50 74.0
CARHR075920 Cardamine hirsuta HOM05D004818 ORTHO05D005444 5.0e-10 67.0 51 72.5
THA.LOC104805479 Tarenaya hassleriana HOM05D004818 ORTHO05D005444 5.0e-10 67.0 54 68.5
CsaV3_3G045680 Cucumis sativus L. HOM05D004818 ORTHO05D005444 6.6e-10 66.6 38 86.8
Thhalv10015231m.g Eutrema salsugineum HOM05D004818 ORTHO05D005444 6.6e-10 66.6 54 66.7
PSO541G2816 Papaver somniferum HOM05D004818 ORTHO05D005444 6.6e-10 66.6 54 74.1
AT5G15320 Arabidopsis thaliana HOM05D004818 ORTHO05D005444 8.6e-10 66.2 54 68.5
Carub.0006s1351 Capsella rubella HOM05D004818 ORTHO05D005444 8.6e-10 66.2 54 68.5
Gohir.D12G031701 Gossypium hirsutum HOM05D004818 ORTHO05D005444 1.5e-09 65.5 50 68.0
THA.LOC109116196 Tarenaya hassleriana HOM05D004818 ORTHO05D005444 1.5e-09 65.5 54 66.7
arahy.Tifrunner.gnm1.ann1.LS9ND1 Arachis hypogaea HOM05D004818 ORTHO05D005444 2.5e-09 64.7 49 71.4
Rhsim05G0067400 Rhododendron simsii HOM05D004818 ORTHO05D005444 2.5e-09 64.7 39 82.1
CDE02G1235 Ceratophyllum demersum HOM05D004818 ORTHO05D005444 3.3e-09 64.3 50 68.0
PGR042G0239 Punica granatum HOM05D004818 ORTHO05D005444 3.3e-09 64.3 40 80.0
Aqoxy5G01447 Aquilegia oxysepala HOM05D004818 ORTHO05D005444 4.3e-09 63.9 51 68.6
CSS0030409 Camellia sinensis var. sinensis HOM05D004818 ORTHO05D005444 7.3e-09 63.2 38 81.6
Oeu020676.1 Olea europaea HOM05D004818 ORTHO05D005444 9.5e-09 62.8 38 78.9
AL6G26200 Arabidopsis lyrata HOM05D004818 ORTHO05D005444 1.2e-08 62.4 54 64.8
Atru.chr13.327 Acer truncatum HOM05D004818 ORTHO05D005444 1.6e-08 62.0 44 68.2
Hma1.2p1_0066F.1_g035670 Hydrangea macrophylla HOM05D004818 ORTHO05D005444 1.6e-08 62.0 49 65.3
BcaC01g04504 Brassica carinata HOM05D004818 ORTHO05D005444 2.1e-08 61.6 45 71.1
SMO358G0321 Selaginella moellendorffii HOM05D004818 ORTHO05D005444 2.1e-08 61.6 52 65.4
Rhsim11G0184800 Rhododendron simsii HOM05D004818 ORTHO05D005444 2.8e-08 61.2 43 74.4
Sc18g0005450 Simmondsia chinensis HOM05D004818 ORTHO05D005444 2.8e-08 61.2 41 78.0
Cc09_g06640 Coffea canephora HOM05D000190 ORTHO05D005444 3.6e-08 60.8 39 79.5
vmacro17409 Vaccinium macrocarpon HOM05D004818 ORTHO05D005444 3.6e-08 60.8 38 81.6
AT3G01130 Arabidopsis thaliana HOM05D004818 ORTHO05D005444 6.1e-08 60.1 38 78.9
A03p07110 Brassica napus HOM05D004818 ORTHO05D005444 6.1e-08 60.1 54 64.8
C03p08100 Brassica napus HOM05D004818 ORTHO05D005444 6.1e-08 60.1 54 64.8
BolC3t13307H Brassica oleracea HOM05D004818 ORTHO05D005444 6.1e-08 60.1 54 64.8
BraA03t10033Z Brassica rapa HOM05D004818 ORTHO05D005444 6.1e-08 60.1 54 64.8
CSS0029185 Camellia sinensis var. sinensis HOM05D004818 ORTHO05D005444 8.0e-08 59.7 38 76.3
Cc11_g00440 Coffea canephora HOM05D004860 ORTHO05D005444 1.0e-07 59.3 38 78.9
CARHR197990 Cardamine hirsuta HOM05D004818 ORTHO05D005444 1.8e-07 58.5 54 63.0
Nitab4.5_0002096g0010 Nicotiana tabacum HOM05D004818 ORTHO05D005444 1.8e-07 58.5 44 70.5
ClCG02G004430 Citrullus lanatus HOM05D004818 ORTHO05D005444 3.1e-07 57.8 44 70.5
Ah.01g018640 Amaranthus hybridus HOM05D004284 ORTHO05D006610 4.0e-07 57.4 51 68.6
BraA05t23174Z Brassica rapa HOM05D004818 ORTHO05D005444 4.0e-07 57.4 38 76.3
Peaxi162Scf00362g01160 Petunia axillaris HOM05D004818 ORTHO05D005444 5.2e-07 57.0 38 76.3
Os04g0117100 Oryza sativa ssp. japonica HOM05D004818 ORTHO05D005444 6.8e-07 56.6 50 66.0
Hund00181 Selenicereus undatus HOM05D004818 ORTHO05D005444 6.8e-07 56.6 49 63.3
Aa31LG11G14220 Aethionema arabicum HOM05D004818 ORTHO05D005444 8.9e-07 56.2 43 72.1
Zm00001eb425810 Zea mays HOM05D004818 ORTHO05D005444 1.2e-06 55.8 50 64.0
BcaB08g36904 Brassica carinata HOM05D004818 ORTHO05D005444 1.5e-06 55.5 54 63.0
Manes.11G092164 Manihot esculenta HOM05D004818 ORTHO05D005444 2.0e-06 55.1 43 65.1
A10p23550 Brassica napus HOM05D004818 ORTHO05D005444 3.4e-06 54.3 54 61.1
BraA10t44421Z Brassica rapa HOM05D004818 ORTHO05D005444 3.4e-06 54.3 54 61.1
Mapoly0066s0039 Marchantia polymorpha HOM05D004818 ORTHO05D005444 4.4e-06 53.9 45 64.4
Zm00001eb078460 Zea mays HOM05D004818 ORTHO05D005444 4.4e-06 53.9 50 62.0
BcaB08g36903 Brassica carinata HOM05D004818 ORTHO05D005444 5.8e-06 53.5 38 73.7
BcaC04g18956 Brassica carinata HOM05D004818 ORTHO05D005444 5.8e-06 53.5 38 73.7
C09p61780 Brassica napus HOM05D004818 ORTHO05D005444 5.8e-06 53.5 38 73.7
BolC9t59016H Brassica oleracea HOM05D004818 ORTHO05D005444 5.8e-06 53.5 38 73.7


User provided reference genes

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