Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0302381 Rosa chinensis HOM05D007073 ORTHO05D008855 2.2e-55 218.8 116 100.0
RcHm_v2.0_Chr6g0272121 Rosa chinensis HOM05D007073 ORTHO05D008855 4.6e-53 211.1 116 96.6
FvH4_5g30190 Fragaria vesca HOM05D007073 ORTHO05D008855 6.1e-53 210.7 116 95.7
HanXRQChr02g0044001 Helianthus annuus HOM05D007073 ORTHO05D008855 1.5e-43 179.5 113 80.5
CSS0049768 Camellia sinensis var. sinensis HOM05D007073 ORTHO05D008855 2.5e-43 178.7 116 78.4
CANSAT25G0010 Cannabis sativa HOM05D007073 ORTHO05D008855 3.3e-43 178.3 109 83.5
Haze_22602 Corylus avellana HOM05D000624 ORTHO05D000495 2.8e-42 175.3 109 82.6
RhsimUnG0148500 Rhododendron simsii HOM05D007073 ORTHO05D008855 6.3e-42 174.1 116 75.9
Dinv31819 Davidia involucrata HOM05D007073 ORTHO05D008855 8.2e-42 173.7 117 76.9
GSVIVG01009840001 Vitis vinifera HOM05D007073 ORTHO05D008855 8.2e-42 173.7 117 74.4
Atru.chr13.338 Acer truncatum HOM05D007073 ORTHO05D008855 1.1e-41 173.3 117 76.1
ECA247G1834 Erigeron canadensis HOM05D007073 ORTHO05D008855 2.4e-41 172.2 115 77.4
MD08G1016500 Malus domestica HOM05D007073 ORTHO05D008855 3.1e-41 171.8 116 80.2
Hma1.2p1_0773F.1_g216240 Hydrangea macrophylla HOM05D007073 ORTHO05D008855 6.9e-41 170.6 113 77.0
Lsat_1_v5_gn_1_16141 Lactuca sativa HOM05D007073 ORTHO05D008855 6.9e-41 170.6 113 77.9
TAR628G0116 Trochodendron aralioides HOM05D007073 ORTHO05D008855 1.2e-40 169.9 117 75.2
FAN13G2867 Fragaria x ananassa HOM05D007073 ORTHO05D008855 4.5e-40 167.9 92 94.6
FAN18G2174 Fragaria x ananassa HOM05D007403 ORTHO05D009306 7.7e-40 167.2 88 97.7
PGR031G0624 Punica granatum HOM05D007073 ORTHO05D008855 7.7e-40 167.2 112 75.9
Sabra05G0182000 Salix brachista HOM05D007073 ORTHO05D008855 7.7e-40 167.2 116 72.4
COL.COLO4_26179 Corchorus olitorius HOM05D007073 ORTHO05D008855 1.7e-39 166.0 117 72.6
MD15G1015600 Malus domestica HOM05D007073 ORTHO05D008855 1.7e-39 166.0 114 76.3
QL02p010904 Quercus lobata HOM05D007073 ORTHO05D008855 2.2e-39 165.6 116 73.3
PGSC0003DMG400003718 Solanum tuberosum HOM05D007073 ORTHO05D008855 2.2e-39 165.6 111 74.8
vmacro21707 Vaccinium macrocarpon HOM05D007073 ORTHO05D008855 2.2e-39 165.6 116 72.4
Potri.005G235800 Populus trichocarpa HOM05D007073 ORTHO05D008855 2.9e-39 165.2 116 71.6
Glyma.08G113800 Glycine max HOM05D007073 ORTHO05D008855 6.5e-39 164.1 114 72.8
Lj4g0003370 Lotus japonicus HOM05D007073 ORTHO05D008855 6.5e-39 164.1 111 73.9
Solyc04g081160.3 Solanum lycopersicum HOM05D007073 ORTHO05D008855 6.5e-39 164.1 111 73.9
Sopen04g034780 Solanum pennellii HOM05D007073 ORTHO05D008855 6.5e-39 164.1 111 73.9
AUR62019145 Chenopodium quinoa HOM05D007073 ORTHO05D008855 1.1e-38 163.3 115 72.2
Peaxi162Scf00287g01620 Petunia axillaris HOM05D007073 ORTHO05D008855 1.4e-38 162.9 111 73.0
Migut.C00802 Erythranthe guttata HOM05D007073 ORTHO05D008855 4.2e-38 161.4 113 75.2
PSO675G5408 Papaver somniferum HOM05D007073 ORTHO05D008855 4.2e-38 161.4 116 73.3
TWI56G0686 Tripterygium wilfordii HOM05D007073 ORTHO05D008855 4.2e-38 161.4 112 73.2
Zm00001eb001980 Zea mays HOM05D007073 ORTHO05D008855 4.2e-38 161.4 110 75.5
Duzib093G1738 Durio zibethinus HOM05D007073 ORTHO05D008855 7.2e-38 160.6 117 69.2
PSO541G6379 Papaver somniferum HOM05D007073 ORTHO05D008855 7.2e-38 160.6 116 73.3
Oeu054729.1 Olea europaea HOM05D007073 ORTHO05D008855 9.4e-38 160.2 109 74.3
ClCG08G014440 Citrullus lanatus HOM05D007073 ORTHO05D008855 1.2e-37 159.8 118 69.5
CANSAT11G0546 Cannabis sativa HOM05D007073 ORTHO05D008855 1.6e-37 159.5 108 75.0
Eucgr.H01040 Eucalyptus grandis HOM05D007073 ORTHO05D008855 2.1e-37 159.1 111 70.3
Sed0011824 Sechium edule HOM05D007073 ORTHO05D008855 2.1e-37 159.1 116 70.7
Eucgr.L01253 Eucalyptus grandis HOM05D007073 ORTHO05D008855 2.7e-37 158.7 111 70.3
Nn5g29254 Nelumbo nucifera HOM05D007073 ORTHO05D008855 2.7e-37 158.7 117 70.9
CARHR030330 Cardamine hirsuta HOM05D007073 ORTHO05D008855 3.6e-37 158.3 113 69.9
VMungo0251G2135 Vigna mungo HOM05D007073 ORTHO05D008855 3.6e-37 158.3 111 73.0
EL10Ac1g00450 Beta vulgaris HOM05D007073 ORTHO05D008855 6.1e-37 157.5 115 69.6
Prupe.1G369500 Prunus persica HOM05D007073 ORTHO05D008855 7.9e-37 157.1 98 86.7
SGA_v2.0_scaffold92G28274 Striga asiatica HOM05D007073 ORTHO05D008855 7.9e-37 157.1 113 70.8
Zm00001eb403590 Zea mays HOM05D007073 ORTHO05D008855 7.9e-37 157.1 110 72.7
CDE08G0828 Ceratophyllum demersum HOM05D007073 ORTHO05D008855 1.0e-36 156.8 116 66.4
CAN.G1271.5 Capsicum annuum HOM05D007073 ORTHO05D008855 1.4e-36 156.4 111 71.2
SalBow7G2056 Salvia bowleyana HOM05D007073 ORTHO05D008855 1.4e-36 156.4 113 71.7
Aa31LG6G9870 Aethionema arabicum HOM05D007073 ORTHO05D008855 1.8e-36 156.0 113 70.8
BcaC05g27117 Brassica carinata HOM05D007073 ORTHO05D008855 1.8e-36 156.0 113 69.0
BcaC05g27119 Brassica carinata HOM05D007073 ORTHO05D008855 1.8e-36 156.0 113 69.0
C05p29970 Brassica napus HOM05D007073 ORTHO05D008855 1.8e-36 156.0 113 69.0
BolC5t31732H Brassica oleracea HOM05D007073 ORTHO05D008855 1.8e-36 156.0 113 69.0
BolC5t31736H Brassica oleracea HOM05D007073 ORTHO05D008855 1.8e-36 156.0 113 69.0
Thhalv10009135m.g Eutrema salsugineum HOM05D007073 ORTHO05D008855 1.8e-36 156.0 113 68.1
Rhsim06G0025500 Rhododendron simsii HOM05D000624 ORTHO05D000495 1.8e-36 156.0 103 75.7
A09p35370 Brassica napus HOM05D007073 ORTHO05D008855 3.0e-36 155.2 113 68.1
CANSAT11G2499 Cannabis sativa HOM05D007073 ORTHO05D008855 3.0e-36 155.2 111 73.0
Carub.0001s2918 Capsella rubella HOM05D007073 ORTHO05D008855 3.0e-36 155.2 113 69.0
CsaV3_2G029360 Cucumis sativus L. HOM05D007073 ORTHO05D008855 3.9e-36 154.8 116 69.0
Phvul.002G236200 Phaseolus vulgaris HOM05D007073 ORTHO05D008855 6.7e-36 154.1 111 72.1
Psat7g072280 Pisum sativum HOM05D007073 ORTHO05D008855 6.7e-36 154.1 110 70.0
Sp1g26740 Schrenkiella parvula HOM05D007073 ORTHO05D008855 6.7e-36 154.1 113 68.1
THA.LOC104810648 Tarenaya hassleriana HOM05D007073 ORTHO05D008855 8.8e-36 153.7 113 70.8
Ca_17949_v3 Cicer arietinum L. HOM05D007073 ORTHO05D008855 1.1e-35 153.3 116 66.4
Lalb_Chr12g0205331 Lupinus albus HOM05D007073 ORTHO05D008855 1.1e-35 153.3 111 72.1
unitig_32.g11146 Utricularia gibba HOM05D007073 ORTHO05D008855 1.1e-35 153.3 110 73.6
arahy.Tifrunner.gnm1.ann1.0LW32C Arachis hypogaea HOM05D007073 ORTHO05D008855 2.0e-35 152.5 111 71.2
Cc04_g14740 Coffea canephora HOM05D007073 ORTHO05D008855 2.0e-35 152.5 111 71.2
TPR.G24371 Trifolium pratense HOM05D007073 ORTHO05D008855 2.0e-35 152.5 111 71.2
SGA_v2.0_scaffold92G28275 Striga asiatica HOM05D007073 ORTHO05D008855 2.6e-35 152.1 111 70.3
BcaB07g32745 Brassica carinata HOM05D007073 ORTHO05D008855 3.3e-35 151.8 111 68.5
Medtr8g085700 Medicago truncatula HOM05D007073 ORTHO05D008855 3.3e-35 151.8 112 70.5
Manes.18G016450 Manihot esculenta HOM05D007073 ORTHO05D008855 4.4e-35 151.4 116 66.4
Glyma.05G155900 Glycine max HOM05D007073 ORTHO05D008855 9.7e-35 150.2 109 69.7
Sc26g0003150 Simmondsia chinensis HOM05D007073 ORTHO05D008855 9.7e-35 150.2 115 67.0
Cc02_g29940 Coffea canephora HOM05D007073 ORTHO05D008855 1.3e-34 149.8 111 69.4
AT1G30845 Arabidopsis thaliana HOM05D007073 ORTHO05D008855 1.7e-34 149.4 113 68.1
HPP92_025607 Vanilla planifolia HOM05D007073 ORTHO05D008855 1.1e-33 146.7 111 66.7
Cfa013916 Carpinus fangiana HOM05D007073 ORTHO05D008855 2.4e-33 145.6 86 84.9
MSTRG.1215 Avicennia marina HOM05D007073 ORTHO05D008855 5.3e-33 144.4 112 65.2
arahy.Tifrunner.gnm1.ann1.F1G2D9 Arachis hypogaea HOM05D007073 ORTHO05D008855 9.1e-33 143.7 134 59.0
C05p29960 Brassica napus HOM05D007073 ORTHO05D008855 1.1e-30 136.7 96 70.8
CiPaw.07G153100 Carya illinoinensis HOM05D007073 ORTHO05D008855 1.9e-30 136.0 89 76.4
Gohir.A01G112900 Gossypium hirsutum HOM05D007073 ORTHO05D008855 1.9e-30 136.0 89 77.5
Os03g0127000 Oryza sativa ssp. japonica HOM05D007073 ORTHO05D008855 1.9e-30 136.0 82 80.5
Ciclev10002853m.g Citrus clementina HOM05D007073 ORTHO05D008855 3.2e-30 135.2 102 68.6
Thecc.08G038900 Theobroma cacao HOM05D007073 ORTHO05D008855 6.1e-29 131.0 89 71.9
AUR62014408 Chenopodium quinoa HOM05D007073 ORTHO05D008855 1.0e-28 130.2 87 73.6
Gohir.D01G101000 Gossypium hirsutum HOM05D007073 ORTHO05D008855 1.4e-28 129.8 89 74.2
Peaxi162Scf01591g00005 Petunia axillaris HOM05D007073 ORTHO05D008855 1.4e-28 129.8 83 73.5
ATR0945G003 Amborella trichopoda HOM05D007073 ORTHO05D008855 3.0e-28 128.6 105 62.9
Nitab4.5_0005185g0010 Nicotiana tabacum HOM05D007073 ORTHO05D008855 5.2e-28 127.9 88 72.7
Aqoxy6G02335_Aqoxy6G02336 Aquilegia oxysepala HOM05D000558 ORTHO05D001857 8.8e-28 127.1 93 68.8
AL1G45120 Arabidopsis lyrata HOM05D007073 ORTHO05D008855 8.8e-28 127.1 100 64.0
MELO3C010995.2 Cucumis melo HOM05D007073 ORTHO05D008855 9.7e-27 123.6 88 70.5
Actinidia26593 Actinidia chinensis HOM05D007073 ORTHO05D008855 1.3e-26 123.2 96 67.7
Actinidia37317 Actinidia chinensis HOM05D007073 ORTHO05D008855 2.6e-24 115.5 86 67.4
SEGI_10735 Sequoiadendron giganteum HOM05D007073 ORTHO05D008855 3.5e-24 115.2 115 57.4
Eucgr.H01037 Eucalyptus grandis HOM05D007073 ORTHO05D008855 3.8e-23 111.7 84 70.2
MD13G1087600 Malus domestica HOM05D007073 ORTHO05D008855 3.2e-22 108.6 79 74.7
C05p30020 Brassica napus HOM05D007073 ORTHO05D008855 4.0e-20 101.7 80 61.2
FAN04G0335 Fragaria x ananassa HOM05D007403 ORTHO05D009306 9.7e-19 97.1 52 92.3
Mapoly0121s0038 Marchantia polymorpha HOM05D007073 ORTHO05D008855 8.3e-18 94.0 112 47.3
DCAR_017499 Daucus carota HOM05D007073 ORTHO05D008855 2.4e-17 92.4 64 78.1
BolC5t31739H Brassica oleracea HOM05D007073 ORTHO05D008855 5.9e-16 87.8 67 62.7
Eucgr.L01259 Eucalyptus grandis HOM05D007073 ORTHO05D008855 1.3e-15 86.7 54 74.1
Pp3c8_14860 Physcomitrium patens HOM05D007073 ORTHO05D008855 2.2e-15 85.9 108 51.9
arahy.Tifrunner.gnm1.ann1.JR36LC Arachis hypogaea HOM05D007073 ORTHO05D008855 6.5e-15 84.3 49 81.6
AagrBONN_evm.TU.Sc2ySwM_344.4448 Anthoceros agrestis HOM05D007073 ORTHO05D008855 8.0e-13 77.4 116 41.4
Actinidia04603 Actinidia chinensis HOM05D007073 ORTHO05D008855 1.0e-12 77.0 65 60.0
BcaC05g27114 Brassica carinata HOM05D007073 ORTHO05D008855 2.3e-07 59.3 108 36.1


User provided reference genes

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