Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0301461 Rosa chinensis HOM05D006275 ORTHO05D007839 4.6e-76 287.7 137 100.0
FAN15G2697 Fragaria x ananassa HOM05D006275 ORTHO05D007839 1.4e-69 266.2 135 92.6
FAN27G1059 Fragaria x ananassa HOM05D006275 ORTHO05D007839 5.4e-69 264.2 135 91.9
FvH4_2g39490 Fragaria vesca HOM05D006275 ORTHO05D007839 1.1e-66 256.5 140 88.6
Prupe.1G376100 Prunus persica HOM05D006275 ORTHO05D007839 1.3e-62 243.0 139 84.9
MD15G1023800 Malus domestica HOM05D006275 ORTHO05D007839 3.9e-59 231.5 140 79.3
MD08G1027600 Malus domestica HOM05D006275 ORTHO05D007839 2.0e-55 219.2 140 77.9
CANSAT56G0974 Cannabis sativa HOM05D006275 ORTHO05D007839 8.4e-54 213.8 135 76.3
Potri.002G033300 Populus trichocarpa HOM05D006275 ORTHO05D007839 4.2e-53 211.5 138 73.9
Gorai.009G200300 Gossypium raimondii HOM05D006275 ORTHO05D007839 7.1e-53 210.7 138 76.1
Gohir.D05G195400 Gossypium hirsutum HOM05D006275 ORTHO05D007839 9.3e-53 210.3 138 76.1
FAN20G1429 Fragaria x ananassa HOM05D006275 ORTHO05D007839 1.2e-52 209.9 111 85.6
CiPaw.07G158800 Carya illinoinensis HOM05D006275 ORTHO05D007839 1.6e-52 209.5 139 74.8
GSVIVG01009748001 Vitis vinifera HOM05D006275 ORTHO05D007839 5.1e-51 204.5 139 74.1
Gohir.A05G192200 Gossypium hirsutum HOM05D006275 ORTHO05D007839 6.7e-51 204.1 138 74.6
CsaV3_3G045380 Cucumis sativus L. HOM05D006275 ORTHO05D007839 2.5e-50 202.2 137 71.5
Thecc.08G031000 Theobroma cacao HOM05D006275 ORTHO05D007839 2.5e-50 202.2 138 73.9
Duzib093G0437 Durio zibethinus HOM05D006275 ORTHO05D007839 3.3e-50 201.8 140 72.1
MELO3C003811.2 Cucumis melo HOM05D006275 ORTHO05D007839 1.6e-49 199.5 137 71.5
Phvul.001G012400 Phaseolus vulgaris HOM05D006275 ORTHO05D007839 1.6e-49 199.5 138 71.0
VMungo0647G0412 Vigna mungo HOM05D006275 ORTHO05D007839 1.6e-49 199.5 138 71.0
Cpa.g.c33902 Carica papaya HOM05D006275 ORTHO05D007839 2.2e-49 199.1 135 69.6
Nn1g04018 Nelumbo nucifera HOM05D006275 ORTHO05D007839 2.8e-49 198.7 136 72.1
ClCG05G018790 Citrullus lanatus HOM05D006275 ORTHO05D007839 6.3e-49 197.6 137 70.8
Sed0006872 Sechium edule HOM05D006275 ORTHO05D007839 6.3e-49 197.6 135 69.6
Ciclev10002669m.g Citrus clementina HOM05D006275 ORTHO05D007839 1.4e-48 196.4 140 70.0
Manes.05G156800 Manihot esculenta HOM05D006275 ORTHO05D007839 1.4e-48 196.4 138 71.7
PGR031G1371 Punica granatum HOM05D006275 ORTHO05D007839 1.4e-48 196.4 139 69.8
Dinv39443 Davidia involucrata HOM05D006275 ORTHO05D007839 1.8e-48 196.1 138 70.3
CSS0002686 Camellia sinensis var. sinensis HOM05D000817 ORTHO05D000702 4.1e-48 194.9 140 68.6
CSS0030866 Camellia sinensis var. sinensis HOM05D000817 ORTHO05D000702 4.1e-48 194.9 140 68.6
COL.COLO4_26271 Corchorus olitorius HOM05D006275 ORTHO05D007839 1.2e-47 193.4 136 70.6
THA.LOC104811376 Tarenaya hassleriana HOM05D006275 ORTHO05D007839 1.2e-47 193.4 145 66.9
Lalb_Chr22g0354641 Lupinus albus HOM05D006275 ORTHO05D007839 1.5e-47 193.0 137 70.1
TAR628G1199 Trochodendron aralioides HOM05D006275 ORTHO05D007839 1.5e-47 193.0 141 71.6
Cc09_g08950 Coffea canephora HOM05D006275 ORTHO05D007839 2.0e-47 192.6 135 71.1
A05p02860 Brassica napus HOM05D006275 ORTHO05D007839 3.4e-47 191.8 142 66.2
C04p03490 Brassica napus HOM05D006275 ORTHO05D007839 3.4e-47 191.8 142 66.2
BraA05t19277Z Brassica rapa HOM05D006275 ORTHO05D007839 3.4e-47 191.8 142 66.2
arahy.Tifrunner.gnm1.ann1.RSD13X Arachis hypogaea HOM05D006275 ORTHO05D007839 4.5e-47 191.4 137 68.6
arahy.Tifrunner.gnm1.ann1.T5GRUU Arachis hypogaea HOM05D006275 ORTHO05D007839 4.5e-47 191.4 137 68.6
BcaC08g47361 Brassica carinata HOM05D006275 ORTHO05D007839 5.9e-47 191.0 143 67.8
C06p49340 Brassica napus HOM05D006275 ORTHO05D007839 5.9e-47 191.0 143 67.8
BolC6t39969H Brassica oleracea HOM05D006275 ORTHO05D007839 5.9e-47 191.0 143 67.8
Sc02g0005820 Simmondsia chinensis HOM05D006275 ORTHO05D007839 5.9e-47 191.0 138 69.6
A07p40910 Brassica napus HOM05D006275 ORTHO05D007839 7.7e-47 190.7 143 67.1
BraA07t31631Z Brassica rapa HOM05D006275 ORTHO05D007839 7.7e-47 190.7 143 67.1
PSO764G0160 Papaver somniferum HOM05D006275 ORTHO05D007839 1.7e-46 189.5 141 66.0
BcaC02g12477 Brassica carinata HOM05D006275 ORTHO05D007839 2.2e-46 189.1 142 65.5
BolC4t21983H Brassica oleracea HOM05D006275 ORTHO05D007839 2.2e-46 189.1 142 65.5
Glyma.14G072400 Glycine max HOM05D006275 ORTHO05D007839 2.2e-46 189.1 139 67.6
PSO731G0021 Papaver somniferum HOM05D006275 ORTHO05D007839 2.2e-46 189.1 141 66.7
Sabra02G0026900 Salix brachista HOM05D006275 ORTHO05D007839 2.2e-46 189.1 112 78.6
Ca_18049_v3 Cicer arietinum L. HOM05D006275 ORTHO05D007839 3.8e-46 188.3 138 68.8
Medtr1g022450 Medicago truncatula HOM05D006275 ORTHO05D007839 8.5e-46 187.2 136 66.9
arahy.Tifrunner.gnm1.ann1.W9L06J Arachis hypogaea HOM05D006275 ORTHO05D007839 1.1e-45 186.8 135 68.1
arahy.Tifrunner.gnm1.ann1.WR55YC Arachis hypogaea HOM05D006275 ORTHO05D007839 1.1e-45 186.8 135 68.1
BcaC08g47007 Brassica carinata HOM05D006275 ORTHO05D007839 1.9e-45 186.0 147 62.6
Thhalv10019294m.g Eutrema salsugineum HOM05D006275 ORTHO05D007839 2.5e-45 185.7 148 62.2
Ah.05g177020 Amaranthus hybridus HOM05D006275 ORTHO05D007839 3.2e-45 185.3 131 65.6
AL2G35280 Arabidopsis lyrata HOM05D006275 ORTHO05D007839 5.5e-45 184.5 145 65.5
Carub.0002s2219 Capsella rubella HOM05D006275 ORTHO05D007839 5.5e-45 184.5 148 62.8
Haze_22533 Corylus avellana HOM05D006275 ORTHO05D007839 5.5e-45 184.5 107 78.5
Sp5g30490 Schrenkiella parvula HOM05D006275 ORTHO05D007839 7.2e-45 184.1 146 63.0
Atru.chr13.432 Acer truncatum HOM05D006275 ORTHO05D007839 9.4e-45 183.7 103 83.5
MSTRG.1264 Avicennia marina HOM05D006275 ORTHO05D007839 1.2e-44 183.3 135 68.1
Cfa013858 Carpinus fangiana HOM05D006275 ORTHO05D007839 1.6e-44 183.0 107 77.6
AT1G75350 Arabidopsis thaliana HOM05D006275 ORTHO05D007839 2.1e-44 182.6 144 61.1
Lj5g0023115 Lotus japonicus HOM05D006275 ORTHO05D007839 2.7e-44 182.2 137 65.0
EL10Ac1g00643 Beta vulgaris HOM05D006275 ORTHO05D007839 3.6e-44 181.8 132 66.7
AUR62038041 Chenopodium quinoa HOM05D006275 ORTHO05D007839 6.1e-44 181.0 132 67.4
Migut.N00484 Erythranthe guttata HOM05D006275 ORTHO05D007839 6.1e-44 181.0 140 66.4
Oeu047769.1 Olea europaea HOM05D006275 ORTHO05D007839 1.0e-43 180.3 136 65.4
Psat6g009240 Pisum sativum HOM05D006275 ORTHO05D007839 1.0e-43 180.3 137 67.2
Eucgr.F01878 Eucalyptus grandis HOM05D006275 ORTHO05D007839 1.4e-43 179.9 131 67.9
Oeu002824.1 Olea europaea HOM05D006275 ORTHO05D007839 1.4e-43 179.9 136 66.9
AUR62014497 Chenopodium quinoa HOM05D006275 ORTHO05D007839 1.8e-43 179.5 132 65.9
Nitab4.5_0003265g0060 Nicotiana tabacum HOM05D006275 ORTHO05D007839 1.8e-43 179.5 131 66.4
Aa31LG4G5560 Aethionema arabicum HOM05D006275 ORTHO05D007839 2.3e-43 179.1 143 64.3
CARHR068700 Cardamine hirsuta HOM05D006275 ORTHO05D007839 2.3e-43 179.1 144 62.5
Glyma.17G252600 Glycine max HOM05D006275 ORTHO05D007839 2.3e-43 179.1 101 80.2
TPR.G20152 Trifolium pratense HOM05D006275 ORTHO05D007839 2.3e-43 179.1 129 68.2
TWI36G0893 Tripterygium wilfordii HOM05D006275 ORTHO05D007839 3.0e-43 178.7 141 65.2
Migut.J00614 Erythranthe guttata HOM05D006275 ORTHO05D007839 3.9e-43 178.3 136 66.9
Peaxi162Scf00140g10025 Petunia axillaris HOM05D006275 ORTHO05D007839 3.9e-43 178.3 127 67.7
Nitab4.5_0009228g0020 Nicotiana tabacum HOM05D006275 ORTHO05D007839 5.1e-43 177.9 131 65.6
Aqoxy5G01584 Aquilegia oxysepala HOM05D006275 ORTHO05D007839 8.8e-43 177.2 138 65.2
HanXRQChr09g0268981 Helianthus annuus HOM05D006275 ORTHO05D007839 1.5e-42 176.4 138 63.0
SGA_v2.0_scaffold201G41391 Striga asiatica HOM05D006275 ORTHO05D007839 2.0e-42 176.0 136 64.7
CSS0039262 Camellia sinensis var. sinensis HOM05D006275 ORTHO05D007839 4.3e-42 174.9 138 66.7
Solyc04g080630.4 Solanum lycopersicum HOM05D006275 ORTHO05D007839 4.3e-42 174.9 137 65.0
DCAR_022467 Daucus carota HOM05D006275 ORTHO05D007839 7.4e-42 174.1 131 62.6
Lsat_1_v5_gn_4_117720 Lactuca sativa HOM05D006275 ORTHO05D007839 7.4e-42 174.1 139 62.6
ECA232G2653 Erigeron canadensis HOM05D006275 ORTHO05D007839 9.7e-42 173.7 137 62.0
SalBow7G2217 Salvia bowleyana HOM05D006275 ORTHO05D007839 3.7e-41 171.8 132 64.4
unitig_46.g17937 Utricularia gibba HOM05D006275 ORTHO05D007839 3.7e-41 171.8 135 62.2
PGSC0003DMG400003696 Solanum tuberosum HOM05D006275 ORTHO05D007839 4.8e-41 171.4 137 64.2
HanXRQChr16g0501501 Helianthus annuus HOM05D006275 ORTHO05D007839 1.8e-40 169.5 140 61.4
HPP92_009679 Vanilla planifolia HOM05D006275 ORTHO05D007839 2.6e-39 165.6 100 73.0
ATR0568G031 Amborella trichopoda HOM05D006275 ORTHO05D007839 5.0e-38 161.4 99 72.7
CDE02G2235 Ceratophyllum demersum HOM05D006275 ORTHO05D007839 3.2e-37 158.7 133 60.2
Sopen04g034220 Solanum pennellii HOM05D006275 ORTHO05D007839 4.2e-37 158.3 110 69.1
Actinidia37997 Actinidia chinensis HOM05D006275 ORTHO05D007839 5.5e-37 157.9 91 73.6
Pp3c4_22510 Physcomitrium patens HOM05D006275 ORTHO05D007839 5.5e-37 157.9 134 59.0
CDE06G0798 Ceratophyllum demersum HOM05D006275 ORTHO05D007839 1.2e-36 156.8 133 59.4
vmacro04538 Vaccinium macrocarpon HOM05D006275 ORTHO05D007839 1.6e-36 156.4 112 65.2
Pp3c3_430 Physcomitrium patens HOM05D006275 ORTHO05D007839 2.3e-35 152.5 134 56.7
Pp3c13_7030 Physcomitrium patens HOM05D006275 ORTHO05D007839 3.3e-34 148.7 103 63.1
Rhsim07G0241500 Rhododendron simsii HOM05D006275 ORTHO05D007839 3.7e-33 145.2 103 66.0
RhsimUnG0236400 Rhododendron simsii HOM05D006275 ORTHO05D007839 3.7e-33 145.2 103 66.0
Mapoly0051s0056 Marchantia polymorpha HOM05D006275 ORTHO05D007839 4.8e-33 144.8 100 64.0
AagrBONN_evm.TU.Sc2ySwM_368.2624 Anthoceros agrestis HOM05D006275 ORTHO05D007839 7.7e-31 137.5 103 61.2
Duzib041G0262 Durio zibethinus HOM05D006275 ORTHO05D007839 1.9e-29 132.9 76 80.3
CBR_g52135 Chara braunii HOM05D006275 ORTHO05D007839 3.6e-28 128.6 103 59.2
QL02p009087 Quercus lobata HOM05D006275 ORTHO05D007839 8.0e-28 127.5 76 77.6
SMO117G0016 Selaginella moellendorffii HOM05D006275 ORTHO05D007839 8.0e-28 127.5 100 58.0
SEGI_04934 Sequoiadendron giganteum HOM05D006275 ORTHO05D007839 6.7e-27 124.4 100 59.0
Zm00001eb159080 Zea mays HOM05D006275 ORTHO05D007839 1.7e-25 119.8 109 52.3
Os01g0633000 Oryza sativa ssp. japonica HOM05D006275 ORTHO05D007839 1.8e-24 116.3 109 51.4
Gohir.D12G058400 Gossypium hirsutum HOM05D006275 ORTHO05D007839 7.2e-21 104.4 75 68.0
Cre08.g365400 Chlamydomonas reinhardtii HOM05D006275 ORTHO05D007839 9.4e-21 104.0 122 45.9
BcaC09g48250 Brassica carinata HOM05D006275 ORTHO05D007839 6.1e-20 101.3 57 77.2
Gorai.010G176600 Gossypium raimondii HOM05D006275 ORTHO05D007839 2.3e-19 99.4 76 68.4
MCO12G376 Micromonas commoda HOM05D006275 ORTHO05D007839 2.2e-17 92.8 97 46.4
TWI56G0783 Tripterygium wilfordii HOM05D006275 ORTHO05D007839 6.3e-17 91.3 58 72.4
BcaC05g28396 Brassica carinata HOM05D006275 ORTHO05D003437 2.0e-10 69.7 54 64.8
Sabra05G0177600 Salix brachista HOM05D006275 ORTHO05D007839 4.1e-08 62.0 55 50.9


User provided reference genes

Program Settings