Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0301251 Rosa chinensis HOM05D006278 ORTHO05D007526 1.8e-128 462.6 234 100.0
FAN20G2275 Fragaria x ananassa HOM05D006278 ORTHO05D007526 8.4e-94 347.4 236 77.5
FvH4_2g39641 Fragaria vesca HOM05D006278 ORTHO05D007526 2.1e-92 342.8 241 75.9
FAN27G0814 Fragaria x ananassa HOM05D006278 ORTHO05D007526 3.0e-75 285.8 201 77.6
FAN15G2069 Fragaria x ananassa HOM05D006278 ORTHO05D007526 1.3e-67 260.4 239 62.3
MD08G1030100 Malus domestica HOM05D006278 ORTHO05D007526 1.4e-61 240.4 243 56.8
Prupe.1G377800 Prunus persica HOM05D006278 ORTHO05D007526 7.9e-52 208.0 228 54.4
Haze_13828 Corylus avellana HOM05D006278 ORTHO05D007526 2.5e-50 203.0 219 51.6
Cfa008229 Carpinus fangiana HOM05D006278 ORTHO05D007526 9.7e-50 201.1 220 52.7
CANSAT35G1968 Cannabis sativa HOM05D006278 ORTHO05D007526 1.8e-48 196.8 235 51.5
CiPaw.04G062900 Carya illinoinensis HOM05D006278 ORTHO05D007526 3.1e-48 196.1 241 49.0
Thecc.08G029100 Theobroma cacao HOM05D006278 ORTHO05D007526 3.1e-48 196.1 225 51.6
COL.COLO4_26292 Corchorus olitorius HOM05D006278 ORTHO05D007526 9.1e-48 194.5 252 48.0
Eucgr.F01578 Eucalyptus grandis HOM05D006278 ORTHO05D007526 7.7e-47 191.4 220 48.2
QL12p039628 Quercus lobata HOM05D006278 ORTHO05D007526 1.0e-46 191.0 248 48.0
Dinv36098 Davidia involucrata HOM05D006278 ORTHO05D007526 1.7e-46 190.3 240 50.4
Potri.002G034700 Populus trichocarpa HOM05D006278 ORTHO05D007526 1.7e-46 190.3 246 47.6
Manes.05G158000 Manihot esculenta HOM05D006278 ORTHO05D007526 6.5e-46 188.3 247 46.6
CSS0025999 Camellia sinensis var. sinensis HOM05D006278 ORTHO05D007526 7.9e-44 181.4 183 55.2
TWI12G1431 Tripterygium wilfordii HOM05D006278 ORTHO05D007526 1.0e-43 181.0 254 45.3
Ciclev10000483m.g Citrus clementina HOM05D006278 ORTHO05D007526 1.4e-43 180.6 254 47.2
Lj4P787T11 Lonicera japonica HOM05D006278 ORTHO05D007526 2.3e-43 179.9 222 50.9
Duzib041G0028 Durio zibethinus HOM05D006278 ORTHO05D007526 3.9e-43 179.1 251 46.6
Rhsim06G0031900 Rhododendron simsii HOM05D006278 ORTHO05D007526 5.1e-43 178.7 220 48.6
Atru.chr13.448 Acer truncatum HOM05D006278 ORTHO05D007526 1.5e-42 177.2 254 45.7
Gohir.D06G004900 Gossypium hirsutum HOM05D006278 ORTHO05D007526 9.7e-42 174.5 249 46.2
Gorai.010G009500 Gossypium raimondii HOM05D006278 ORTHO05D007526 9.7e-42 174.5 249 46.2
Aqoxy6G01136 Aquilegia oxysepala HOM05D006278 ORTHO05D007526 3.7e-41 172.6 234 45.3
Gohir.A06G009400 Gossypium hirsutum HOM05D006278 ORTHO05D007526 5.3e-40 168.7 249 45.0
Sabra02G0027900 Salix brachista HOM05D006278 ORTHO05D007526 3.4e-39 166.0 237 45.1
Ah.05g169430 Amaranthus hybridus HOM05D006278 ORTHO05D007526 1.0e-38 164.5 233 45.9
DCAR_017552 Daucus carota HOM05D006278 ORTHO05D007526 1.3e-38 164.1 242 44.2
Cpa.g.sc3.303 Carica papaya HOM05D006278 ORTHO05D007526 3.8e-38 162.5 243 44.9
PSO675G3973 Papaver somniferum HOM05D006278 ORTHO05D007526 3.8e-38 162.5 213 46.9
TAR101G0003 Trochodendron aralioides HOM05D006278 ORTHO05D007526 8.5e-38 161.4 222 46.4
Peaxi162Scf00303g00043 Petunia axillaris HOM05D006278 ORTHO05D007526 9.4e-37 157.9 221 44.3
PSO541G0933 Papaver somniferum HOM05D006278 ORTHO05D007526 1.6e-36 157.1 213 46.5
MSTRG.1269 Avicennia marina HOM05D006278 ORTHO05D007526 3.6e-36 156.0 219 43.8
Sc02g0005980 Simmondsia chinensis HOM05D006278 ORTHO05D007526 6.1e-36 155.2 221 43.0
AUR62033855 Chenopodium quinoa HOM05D006278 ORTHO05D007526 7.9e-36 154.8 236 43.2
AUR62041670 Chenopodium quinoa HOM05D006278 ORTHO05D007526 7.9e-36 154.8 236 43.6
Nitab4.5_0002224g0110 Nicotiana tabacum HOM05D006278 ORTHO05D007526 7.9e-36 154.8 238 41.2
MD15G1025500 Malus domestica HOM05D006278 ORTHO05D007526 1.0e-35 154.5 173 55.5
Oeu049934.1 Olea europaea HOM05D006278 ORTHO05D007526 1.0e-35 154.5 237 44.3
Duzib093G1165 Durio zibethinus HOM05D006278 ORTHO05D007526 1.8e-35 153.7 208 47.6
PGR004G0534 Punica granatum HOM05D006278 ORTHO05D007526 8.8e-35 151.4 228 43.4
Sopen04g034110 Solanum pennellii HOM05D006278 ORTHO05D007526 2.6e-34 149.8 241 38.2
Lalb_Chr24g0398921 Lupinus albus HOM05D006278 ORTHO05D007526 9.7e-34 147.9 249 39.8
CAN.G424.60 Capsicum annuum HOM05D006278 ORTHO05D007526 4.8e-33 145.6 217 43.8
Solyc04g080520.1 Solanum lycopersicum HOM05D006278 ORTHO05D007526 8.2e-33 144.8 241 37.8
CAN.G1226.35 Capsicum annuum HOM05D006278 ORTHO05D007526 1.4e-32 144.1 241 39.0
Nitab4.5_0000017g0170 Nicotiana tabacum HOM05D006278 ORTHO05D007526 1.4e-32 144.1 214 45.8
Nn2g14857 Nelumbo nucifera HOM05D006278 ORTHO05D007526 3.1e-32 142.9 205 42.9
SGA_v2.0_scaffold201G41409 Striga asiatica HOM05D006278 ORTHO05D007526 3.1e-32 142.9 224 41.1
Lj5g0016594 Lotus japonicus HOM05D006278 ORTHO05D007526 5.3e-32 142.1 245 40.0
PGSC0003DMG400003686 Solanum tuberosum HOM05D006278 ORTHO05D007526 5.3e-32 142.1 245 36.3
Aa31LG4G5490 Aethionema arabicum HOM05D006278 ORTHO05D007526 2.0e-31 140.2 239 38.9
Thhalv10018443m.g Eutrema salsugineum HOM05D006278 ORTHO05D007526 2.0e-31 140.2 180 41.7
MBI10_g18263_MAGBIO Magnolia biondii HOM05D006278 ORTHO05D007526 7.7e-31 138.3 225 42.7
TAR381G0716 Trochodendron aralioides HOM05D006278 ORTHO05D007526 7.7e-31 138.3 205 45.4
AT1G75260 Arabidopsis thaliana HOM05D006278 ORTHO05D007526 1.3e-30 137.5 238 40.3
Nitab4.5_0004768g0010 Nicotiana tabacum HOM05D006278 ORTHO05D007526 1.3e-30 137.5 210 44.8
BcaNung04385 Brassica carinata HOM05D006278 ORTHO05D007526 2.9e-30 136.3 181 41.4
TAR245G0008 Trochodendron aralioides HOM05D006278 ORTHO05D007526 2.9e-30 136.3 205 44.9
Sp5g30420 Schrenkiella parvula HOM05D006278 ORTHO05D007526 5.0e-30 135.6 190 41.1
CsaV3_2G028850 Cucumis sativus L. HOM05D006278 ORTHO05D007526 8.5e-30 134.8 183 42.1
Migut.O00967 Erythranthe guttata HOM05D006278 ORTHO05D007526 1.5e-29 134.0 180 44.4
Carub.0002s2208 Capsella rubella HOM05D006278 ORTHO05D007526 3.2e-29 132.9 180 43.3
ClCG08G014920 Citrullus lanatus HOM05D006278 ORTHO05D007526 7.2e-29 131.7 181 44.2
AL2G35180 Arabidopsis lyrata HOM05D006278 ORTHO05D007526 9.4e-29 131.3 183 42.1
Glyma.14G073601 Glycine max HOM05D006278 ORTHO05D007526 1.6e-28 130.6 227 41.9
PGSC0003DMG400005375 Solanum tuberosum HOM05D006278 ORTHO05D007526 1.6e-28 130.6 214 42.1
A07p40840 Brassica napus HOM05D006278 ORTHO05D007526 2.1e-28 130.2 182 41.2
CiPaw.03G096900 Carya illinoinensis HOM05D006278 ORTHO05D007526 2.1e-28 130.2 225 40.9
BraA07t31626Z Brassica rapa HOM05D006278 ORTHO05D007526 2.7e-28 129.8 182 41.2
C06p49230 Brassica napus HOM05D006278 ORTHO05D007526 4.7e-28 129.0 179 41.3
BcaC08g47365 Brassica carinata HOM05D006278 ORTHO05D007526 1.0e-27 127.9 172 41.3
BolC6t39956H Brassica oleracea HOM05D006278 ORTHO05D007526 1.0e-27 127.9 172 41.3
ECA247G1288 Erigeron canadensis HOM05D006278 ORTHO05D007526 1.8e-27 127.1 183 41.5
Sed0000803 Sechium edule HOM05D006278 ORTHO05D007526 4.0e-27 125.9 246 39.4
Peaxi162Scf00020g00184 Petunia axillaris HOM05D006278 ORTHO05D007526 4.4e-26 122.5 222 37.4
Glyma.17G251400 Glycine max HOM05D006278 ORTHO05D007526 5.7e-26 122.1 227 38.8
Potri.005G228400 Populus trichocarpa HOM05D006278 ORTHO05D007526 5.7e-26 122.1 196 42.3
THA.LOC104809215 Tarenaya hassleriana HOM05D006278 ORTHO05D007526 2.8e-25 119.8 181 40.9
CARHR068590 Cardamine hirsuta HOM05D006278 ORTHO05D007526 3.7e-25 119.4 184 41.3
Oeu029831.2 Olea europaea HOM05D006278 ORTHO05D007526 8.2e-25 118.2 179 43.0
Actinidia15341 Actinidia chinensis HOM05D006278 ORTHO05D007526 3.1e-24 116.3 190 44.2
VMungo0647G1119 Vigna mungo HOM05D006278 ORTHO05D007526 7.7e-23 111.7 229 35.4
CDE06G2487 Ceratophyllum demersum HOM05D006278 ORTHO05D007526 2.9e-22 109.8 218 38.5
Medtr3g111950 Medicago truncatula HOM05D006278 ORTHO05D007526 3.8e-22 109.4 181 37.0
Glyma.04G031100 Glycine max HOM05D006278 ORTHO05D007526 6.5e-22 108.6 221 34.8
Lj1g0002957 Lotus japonicus HOM05D006278 ORTHO05D007526 1.1e-21 107.8 218 34.9
TPR.G12310 Trifolium pratense HOM05D006278 ORTHO05D007526 1.1e-21 107.8 180 37.8
VMungo1309G1357 Vigna mungo HOM05D006278 ORTHO05D007526 1.9e-21 107.1 176 37.5
Glyma.06G031201 Glycine max HOM05D006278 ORTHO05D007526 3.2e-21 106.3 168 40.5
Phvul.001G013600 Phaseolus vulgaris HOM05D006278 ORTHO05D007526 4.2e-21 105.9 226 36.7
unitig_0.g2047 Utricularia gibba HOM05D006278 ORTHO05D007526 4.2e-21 105.9 186 38.7
Phvul.009G058700 Phaseolus vulgaris HOM05D006278 ORTHO05D007526 7.2e-21 105.1 235 32.3
Dinv39433 Davidia involucrata HOM05D006278 ORTHO05D007526 2.7e-20 103.2 166 44.0
HPP92_004792 Vanilla planifolia HOM05D006278 ORTHO05D007526 3.6e-20 102.8 190 33.7
ATR0568G158 Amborella trichopoda HOM05D006278 ORTHO05D007526 6.1e-20 102.1 182 37.9
arahy.Tifrunner.gnm1.ann1.7TI70S Arachis hypogaea HOM05D006278 ORTHO05D007526 8.0e-20 101.7 222 33.3
TAR376G1184 Trochodendron aralioides HOM05D006278 ORTHO05D007526 4.0e-19 99.4 158 45.6
Psat5g012120 Pisum sativum HOM05D006278 ORTHO05D007526 5.2e-19 99.0 178 34.8
Ca_15506_v3 Cicer arietinum L. HOM05D006278 ORTHO05D007526 6.8e-19 98.6 235 31.9
arahy.Tifrunner.gnm1.ann1.K7D9EI Arachis hypogaea HOM05D006278 ORTHO05D007526 1.2e-18 97.8 222 32.0
Sabra05G0176300 Salix brachista HOM05D006278 ORTHO05D007526 1.7e-17 94.0 183 39.9
TAR376G0700 Trochodendron aralioides HOM05D006278 ORTHO05D007526 2.8e-17 93.2 158 43.7
CANSAT25G3418 Cannabis sativa HOM05D006278 ORTHO05D007526 3.7e-17 92.8 156 41.7
Ca_13364_v3 Cicer arietinum L. HOM05D006278 ORTHO05D007526 6.3e-17 92.0 214 34.6
Nn5g29644 Nelumbo nucifera HOM05D006278 ORTHO05D007526 1.1e-16 91.3 174 39.1
TPR.G20186 Trifolium pratense HOM05D006278 ORTHO05D007526 3.1e-16 89.7 229 33.6
Psat6g008120 Pisum sativum HOM05D006278 ORTHO05D007526 7.0e-16 88.6 226 32.7
Medtr1g022365 Medicago truncatula HOM05D006278 ORTHO05D007526 3.5e-15 86.3 206 35.4
CDE04G1483 Ceratophyllum demersum HOM05D003484 ORTHO05D004152 6.5e-14 82.0 195 35.4
SEGI_39042 Sequoiadendron giganteum HOM05D006278 ORTHO05D007526 1.5e-13 80.9 174 36.8
Lalb_Chr08g0245891 Lupinus albus HOM05D006278 ORTHO05D007526 9.2e-08 61.6 120 34.2
Nitab4.5_0003711g0040 Nicotiana tabacum HOM05D006278 ORTHO05D007526 7.8e-07 58.5 134 35.1
MBI13_g41464_MAGBIO Magnolia biondii HOM05D004242 ORTHO05D004349 3.8e-06 56.2 130 33.1
CiPaw.02G043100 Carya illinoinensis HOM05D004242 ORTHO05D004349 6.6e-06 55.5 108 38.0
Carub.0005s2862 Capsella rubella HOM05D004242 ORTHO05D004349 8.6e-06 55.1 141 29.8


User provided reference genes

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